Structure, kinetic characterization and subcellular localization of the two ribulose 5-phosphate epimerase isoenzymes from Trypanosoma cruzi

• Published in: PloS one Vol. 12; no. 2; p. e0172405
• Main Authors: Gonzalez, Soledad Natalia, Valsecchi, Wanda Mariela, Maugeri, Dante, Delfino, José María, Cazzulo, Juan José
• Format: Journal Article
• Language: English
• Published: United States Public Library of Science 16-02-2017; Public Library of Science (PLoS)
• Subjects: Acids; Amino Acid Sequence; Amino acids; Antibiotics; Biology and Life Sciences; Carbohydrate Epimerases - chemistry; Carbohydrate Epimerases - genetics; Carbohydrate Epimerases - metabolism; Catalysis; Cloning; Cloning, Molecular; Coexistence; Enzymes; Epimastigotes; Epimerase; Genomes; Glycosomes; Isoenzymes; Kinases; Kinetics; Leishmania mexicana; Localization; Metabolism; Models, Molecular; Next-generation sequencing; Overexpression; Oxidative stress; Parasites; Pentose; Pentose phosphate pathway; Phosphates; Physical Sciences; Physiological aspects; Protein Conformation; Proteins; Proteomics; Protozoa; Reaction kinetics; Research and Analysis Methods; Residues; Ribulosephosphates - metabolism; Sequence Homology, Amino Acid; Structural analysis; Structure; Subcellular Fractions; Trypanosoma brucei; Trypanosoma cruzi; Trypanosoma cruzi - enzymology
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0172405

The enzyme of the pentose phosphate pathway (PPP) ribulose-5-phosphate-epimerase (RPE) is encoded by two genes present in the genome of Trypanosoma cruzi CL Brener clone: TcRPE1 and TcRPE2. Despite high sequence similarity at the amino acid residue level, the recombinant isoenzymes show a strikingly different kinetics. Whereas TcRPE2 follows a typical michaelian behavior, TcRPE1 shows a complex kinetic pattern, displaying a biphasic curve, suggesting the coexistence of -at least- two kinetically different molecular forms. Regarding the subcellular localization in epimastigotes, whereas TcRPE1 is a cytosolic enzyme, TcRPE2 is localized in glycosomes. To our knowledge, TcRPE2 is the first PPP isoenzyme that is exclusively localized in glycosomes. Over-expression of TcRPE1, but not of TcRPE2, significantly reduces the parasite doubling time in vitro, as compared with wild type epimastigotes. Both TcRPEs represent single domain proteins exhibiting the classical α/β TIM-barrel fold, as expected for enzymes with this activity. With regard to the architecture of the active site, all the important amino acid residues for catalysis -with the exception of M58- are also present in both TcRPEs models. The superimposition of the binding pocket of both isoenzyme models shows that they adopt essentially identical positions in the active site with a residue specific RMSD < 2Å, with the sole exception of S12, which displays a large deviation (residue specific RMSD: 11.07 Å). Studies on the quaternary arrangement of these isoenzymes reveal that both are present in a mixture of various oligomeric species made up of an even number of molecules, probably pointing to the dimer as their minimal functional unit. This multiplicity of oligomeric species has not been reported for any of the other RPEs studied so far and it might bear implications for the regulation of TcRPEs activity, although further investigation will be necessary to unravel the physiological significance of these structural findings.