Identification of a Third Human Polyomavirus

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Published in:	Journal of Virology Vol. 81; no. 8; pp. 4130 - 4136
Main Authors:	ALLANDER, Tobias, ANDREASSON, Kalle, GUPTA, Shawon, BJERKNER, Annelie, BOGDANOVIC, Gordana, PERSSON, Mats A. A, DALIANIS, Tina, RAMQVIST, Torbjörn, ANDERSSON, Björn
Format:	Journal Article
Language:	English
Published:	Washington, DC American Society for Microbiology 01-04-2007
Subjects:	Adolescent Adult Aged Aged, 80 and over Base Sequence Biological and medical sciences Blood - virology Body Fluids - virology Child Child, Preschool DNA, Viral - chemistry DNA, Viral - genetics Feces - virology Fundamental and applied biological sciences. Psychology Genetic Diversity and Evolution Humans Infant Infant, Newborn Medicin och hälsovetenskap Microbiology Middle Aged Miscellaneous Molecular Sequence Data Nasopharynx - virology Phylogeny Polymerase Chain Reaction Polyomavirus Polyomavirus - classification Polyomavirus - genetics Polyomavirus - isolation & purification Polyomavirus Infections - epidemiology Polyomavirus Infections - virology Prevalence Respiratory Tract Infections - virology Sequence Homology Tumor Virus Infections - epidemiology Tumor Virus Infections - virology Urine - virology Virology Infection Virus Human Viral disease Polyomavirus Identification Papovaviridae Virology
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Abstract	Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit StumbleUpon Twitter current issue Spotlights in the Current Issue JVI About JVI Subscribers Authors Reviewers Advertisers Inquiries from the Press Permissions & Commercial Reprints ASM Journals Public Access Policy JVI RSS Feeds 1752 N Street N.W. • Washington DC 20036 202.737.3600 • 202.942.9355 fax • journals@asmusa.org Print ISSN: 0022-538X Online ISSN: 1098-5514 Copyright © 2014 by the American Society for Microbiology. For an alternate route to JVI .asm.org, visit: JVI
AbstractList	We have previously reported on a system for large-scale molecular virus screening of clinical samples. As part of an effort to systematically search for unrecognized human pathogens, the technology was applied for virus screening of human respiratory tract samples. This resulted in the identification of a previously unknown polyomavirus provisionally named KI polyomavirus. The virus is phylogenetically related to other primate polyomaviruses in the early region of the genome but has very little homology (<30% amino acid identity) to known polyomaviruses in the late region. The virus was found by PCR in 6 (1%) of 637 nasopharyngeal aspirates and in 1 (0.5%) of 192 fecal samples but was not detected in sets of urine and blood samples. Since polyomaviruses have oncogenic potential and may produce severe disease in immunosuppressed individuals, continued searching for the virus in different medical contexts is important. This finding further illustrates how unbiased screening of respiratory tract samples can be used for the discovery of diverse virus types. ABSTRACT We have previously reported on a system for large-scale molecular virus screening of clinical samples. As part of an effort to systematically search for unrecognized human pathogens, the technology was applied for virus screening of human respiratory tract samples. This resulted in the identification of a previously unknown polyomavirus provisionally named KI polyomavirus. The virus is phylogenetically related to other primate polyomaviruses in the early region of the genome but has very little homology (<30% amino acid identity) to known polyomaviruses in the late region. The virus was found by PCR in 6 (1%) of 637 nasopharyngeal aspirates and in 1 (0.5%) of 192 fecal samples but was not detected in sets of urine and blood samples. Since polyomaviruses have oncogenic potential and may produce severe disease in immunosuppressed individuals, continued searching for the virus in different medical contexts is important. This finding further illustrates how unbiased screening of respiratory tract samples can be used for the discovery of diverse virus types. Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit StumbleUpon Twitter current issue Spotlights in the Current Issue JVI About JVI Subscribers Authors Reviewers Advertisers Inquiries from the Press Permissions & Commercial Reprints ASM Journals Public Access Policy JVI RSS Feeds 1752 N Street N.W. • Washington DC 20036 202.737.3600 • 202.942.9355 fax • journals@asmusa.org Print ISSN: 0022-538X Online ISSN: 1098-5514 Copyright © 2014 by the American Society for Microbiology. For an alternate route to JVI .asm.org, visit: JVI We have previously reported on a system for large-scale molecular virus screening of clinical samples. As part of an effort to systematically search for unrecognized human pathogens, the technology was applied for virus screening of human respiratory tract samples. This resulted in the identification of a previously unknown polyomavirus provisionally named KI polyomavirus. The virus is phylogenetically related to other primate polyomaviruses in the early region of the genome but has very little homology (<30% amino acid identity) to known polyomaviruses in the late region. The virus was found by PCR in 6 (1%) of 637 nasopharyngeal aspirates and in 1 (0.5%) of 192 fecal samples but was not detected in sets of urine and blood samples. Since polyomaviruses have oncogenic potential and may produce severe disease in immunosuppressed individuals, continued searching for the virus in different medical contexts is important. This finding further illustrates how unbiased screening of respiratory tract samples can be used for the discovery of diverse virus types.
Author	Gordana Bogdanovic Kalle Andreasson Shawon Gupta Tina Dalianis Mats A. A. Persson Björn Andersson Torbjörn Ramqvist Tobias Allander Annelie Bjerkner
AuthorAffiliation	Laboratory for Clinical Microbiology, Department of Microbiology, Tumor and Cell Biology, Karolinska University Hospital, Karolinska Institutet, SE-17176 Stockholm, Sweden, 1 Cancer Center Karolinska, Department of Oncology and Pathology, Karolinska University Hospital, Karolinska Institutet, SE-17176 Stockholm, Sweden, 2 Center for Molecular Medicine, Department of Medicine, Karolinska University Hospital, Karolinska Institutet, SE-17176 Stockholm, Sweden, 3 Department of Cell and Molecular Biology, Karolinska Institutet, SE-17177 Stockholm, Sweden 4
AuthorAffiliation_xml	– name: Laboratory for Clinical Microbiology, Department of Microbiology, Tumor and Cell Biology, Karolinska University Hospital, Karolinska Institutet, SE-17176 Stockholm, Sweden, 1 Cancer Center Karolinska, Department of Oncology and Pathology, Karolinska University Hospital, Karolinska Institutet, SE-17176 Stockholm, Sweden, 2 Center for Molecular Medicine, Department of Medicine, Karolinska University Hospital, Karolinska Institutet, SE-17176 Stockholm, Sweden, 3 Department of Cell and Molecular Biology, Karolinska Institutet, SE-17177 Stockholm, Sweden 4
Author_xml	– sequence: 1 givenname: Tobias surname: ALLANDER fullname: ALLANDER, Tobias organization: Laboratory for Clinical Microbiology, Department of Microbiology, Tumor and Cell Biology, Karolinska University Hospital, Karolinska Institutet, 17176 Stockholm, Sweden – sequence: 2 givenname: Kalle surname: ANDREASSON fullname: ANDREASSON, Kalle organization: Cancer Center Karolinska, Department of Oncology and Pathology, Karolinska University Hospital, Karolinska Institutet, 17176 Stockholm, Sweden – sequence: 3 givenname: Shawon surname: GUPTA fullname: GUPTA, Shawon organization: Laboratory for Clinical Microbiology, Department of Microbiology, Tumor and Cell Biology, Karolinska University Hospital, Karolinska Institutet, 17176 Stockholm, Sweden – sequence: 4 givenname: Annelie surname: BJERKNER fullname: BJERKNER, Annelie organization: Laboratory for Clinical Microbiology, Department of Microbiology, Tumor and Cell Biology, Karolinska University Hospital, Karolinska Institutet, 17176 Stockholm, Sweden – sequence: 5 givenname: Gordana surname: BOGDANOVIC fullname: BOGDANOVIC, Gordana organization: Laboratory for Clinical Microbiology, Department of Microbiology, Tumor and Cell Biology, Karolinska University Hospital, Karolinska Institutet, 17176 Stockholm, Sweden – sequence: 6 givenname: Mats A. A surname: PERSSON fullname: PERSSON, Mats A. A organization: Center for Molecular Medicine, Department of Medicine, Karolinska University Hospital, Karolinska Institutet, 17176 Stockholm, Sweden – sequence: 7 givenname: Tina surname: DALIANIS fullname: DALIANIS, Tina organization: Cancer Center Karolinska, Department of Oncology and Pathology, Karolinska University Hospital, Karolinska Institutet, 17176 Stockholm, Sweden – sequence: 8 givenname: Torbjörn surname: RAMQVIST fullname: RAMQVIST, Torbjörn organization: Cancer Center Karolinska, Department of Oncology and Pathology, Karolinska University Hospital, Karolinska Institutet, 17176 Stockholm, Sweden – sequence: 9 givenname: Björn surname: ANDERSSON fullname: ANDERSSON, Björn organization: Department of Cell and Molecular Biology, Karolinska Institutet, 17177 Stockholm, Sweden
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Notes	ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Corresponding author. Mailing address: Department of Clinical Microbiology, L2:02, Karolinska University Hospital, SE-171 76 Stockholm, Sweden. Phone: 46 8 51773580. Fax: 46 8 308099. E-mail: tobias.allander@karolinska.se
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Snippet	Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley... We have previously reported on a system for large-scale molecular virus screening of clinical samples. As part of an effort to systematically search for... ABSTRACT We have previously reported on a system for large-scale molecular virus screening of clinical samples. As part of an effort to systematically search...
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StartPage	4130
SubjectTerms	Adolescent Adult Aged Aged, 80 and over Base Sequence Biological and medical sciences Blood - virology Body Fluids - virology Child Child, Preschool DNA, Viral - chemistry DNA, Viral - genetics Feces - virology Fundamental and applied biological sciences. Psychology Genetic Diversity and Evolution Humans Infant Infant, Newborn Medicin och hälsovetenskap Microbiology Middle Aged Miscellaneous Molecular Sequence Data Nasopharynx - virology Phylogeny Polymerase Chain Reaction Polyomavirus Polyomavirus - classification Polyomavirus - genetics Polyomavirus - isolation & purification Polyomavirus Infections - epidemiology Polyomavirus Infections - virology Prevalence Respiratory Tract Infections - virology Sequence Homology Tumor Virus Infections - epidemiology Tumor Virus Infections - virology Urine - virology Virology
Title	Identification of a Third Human Polyomavirus
URI	http://jvi.asm.org/content/81/8/4130.abstract https://www.ncbi.nlm.nih.gov/pubmed/17287263 https://search.proquest.com/docview/19656616 https://search.proquest.com/docview/70319509 https://pubmed.ncbi.nlm.nih.gov/PMC1866148 http://kipublications.ki.se/Default.aspx?queryparsed=id:12128877
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