Studying bacterial transcriptomes using RNA-seq
Genome-wide studies of bacterial gene expression are shifting from microarray technology to second generation sequencing platforms. RNA-seq has a number of advantages over hybridization-based techniques, such as annotation-independent detection of transcription, improved sensitivity and increased dy...
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| Published in: | Current opinion in microbiology Vol. 13; no. 5; pp. 619 - 624 |
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| Main Authors: | , |
| Format: | Journal Article |
| Language: | English |
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Elsevier Ltd
01-10-2010
Elsevier Current Biology |
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| Abstract | Genome-wide studies of bacterial gene expression are shifting from microarray technology to second generation sequencing platforms. RNA-seq has a number of advantages over hybridization-based techniques, such as annotation-independent detection of transcription, improved sensitivity and increased dynamic range. Early studies have uncovered a wealth of novel coding sequences and non-coding RNA, and are revealing a transcriptional landscape that increasingly mirrors that of eukaryotes. Already basic RNA-seq protocols have been improved and adapted to looking at particular aspects of RNA biology, often with an emphasis on non-coding RNAs, and further refinements to current techniques will improve our understanding of gene expression, and genome content, in the future. |
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| AbstractList | Genome-wide studies of bacterial gene expression are shifting from microarray technology to second generation sequencing platforms. RNA-seq has a number of advantages over hybridization-based techniques, such as annotation-independent detection of transcription, improved sensitivity and increased dynamic range. Early studies have uncovered a wealth of novel coding sequences and non-coding RNA, and are revealing a transcriptional landscape that increasingly mirrors that of eukaryotes. Already basic RNA-seq protocols have been improved and adapted to looking at particular aspects of RNA biology, often with an emphasis on non-coding RNAs, and further refinements to current techniques will improve our understanding of gene expression, and genome content, in the future. |
| Author | Thomson, Nicholas R Croucher, Nicholas J |
| AuthorAffiliation | The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, Cambridgeshire, CB10 1SA, UK |
| AuthorAffiliation_xml | – name: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, Cambridgeshire, CB10 1SA, UK |
| Author_xml | – sequence: 1 fullname: Croucher, Nicholas J – sequence: 2 fullname: Thomson, Nicholas R |
| BackLink | http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=23335621$$DView record in Pascal Francis https://www.ncbi.nlm.nih.gov/pubmed/20888288$$D View this record in MEDLINE/PubMed |
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| Keywords | Bacteria Review High throughput sequencing Transcriptome |
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| SubjectTerms | Bacteria Bacteriology Biological and medical sciences DNA microarrays Fundamental and applied biological sciences. Psychology Gene expression Gene Expression Profiling Genes, Bacterial Genomes Landscape Microbiology Miscellaneous non-coding RNA Oligonucleotide Array Sequence Analysis Pathology Reviews RNA, Bacterial - analysis RNA, Bacterial - genetics Sequence Analysis, RNA - methods Transcription |
| Title | Studying bacterial transcriptomes using RNA-seq |
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