Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm

Composite Module Analyst (CMA) is a novel software tool aiming to identify promoter-enhancer models based on the composition of transcription factor (TF) binding sites and their pairs. CMA is closely interconnected with the TRANSFAC® database. In particular, CMA uses the positional weight matrix (PW...

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Bibliographic Details

Published in:	Nucleic acids research Vol. 34; no. suppl-2; pp. W541 - W545
Main Authors:	Waleev, T, Shtokalo, D, Konovalova, T, Voss, N, Cheremushkin, E, Stegmaier, P, Kel-Margoulis, O, Wingender, E, Kel, A
Format:	Journal Article
Language:	English
Published:	England Oxford University Press 01-07-2006 Oxford Publishing Limited (England)
Subjects:	Algorithms Binding Sites Endothelial Cells - metabolism Gene Expression Profiling Humans Internet Promoter Regions, Genetic Sequence Analysis, DNA - methods Software Transcription Factors - metabolism User-Computer Interface
Online Access:	Get full text
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