High-level relatedness among Mycobacterium abscessus subsp. massiliense strains from widely separated outbreaks
Three recently sequenced strains isolated from patients during an outbreak of Mycobacterium abscessus subsp. massiliense infections at a cystic fibrosis center in the United States were compared with 6 strains from an outbreak at a cystic fibrosis center in the United Kingdom and worldwide strains....
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| Published in: | Emerging infectious diseases Vol. 20; no. 3; pp. 364 - 371 |
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| Main Authors: | , , , , , , , , , , , , , , , , , , , , , |
| Format: | Journal Article |
| Language: | English |
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United States
U.S. National Center for Infectious Diseases
01-03-2014
Centers for Disease Control and Prevention |
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| Abstract | Three recently sequenced strains isolated from patients during an outbreak of Mycobacterium abscessus subsp. massiliense infections at a cystic fibrosis center in the United States were compared with 6 strains from an outbreak at a cystic fibrosis center in the United Kingdom and worldwide strains. Strains from the 2 cystic fibrosis outbreaks showed high-level relatedness with each other and major-level relatedness with strains that caused soft tissue infections during an epidemic in Brazil. We identified unique single-nucleotide polymorphisms in cystic fibrosis and soft tissue outbreak strains, separate single-nucleotide polymorphisms only in cystic fibrosis outbreak strains, and unique genomic traits for each subset of isolates. Our findings highlight the necessity of identifying M. abscessus to the subspecies level and screening all cystic fibrosis isolates for relatedness to these outbreak strains. We propose 2 diagnostic strategies that use partial sequencing of rpoB and secA1 genes and a multilocus sequence typing protocol. |
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| AbstractList | Three recently sequenced strains isolated from patients during an outbreak of
Mycobacterium abscessus
subsp.
massiliense
infections at a cystic fibrosis center in the United States were compared with 6 strains from an outbreak at a cystic fibrosis center in the United Kingdom and worldwide strains. Strains from the 2 cystic fibrosis outbreaks showed high-level relatedness with each other and major-level relatedness with strains that caused soft tissue infections during an epidemic in Brazil. We identified unique single-nucleotide polymorphisms in cystic fibrosis and soft tissue outbreak strains, separate single-nucleotide polymorphisms only in cystic fibrosis outbreak strains, and unique genomic traits for each subset of isolates. Our findings highlight the necessity of identifying
M. abscessus
to the subspecies level and screening all cystic fibrosis isolates for relatedness to these outbreak strains. We propose 2 diagnostic strategies that use partial sequencing of
rpoB
and
secA1
genes and a multilocus sequence typing protocol. Three recently sequenced strains isolated from patients during an outbreak of Mycobacterium abscessus subsp. massiliense infections at a cystic fibrosis center in the United States were compared with 6 strains from an outbreak at a cystic fibrosis center in the United Kingdom and worldwide strains. Strains from the 2 cystic fibrosis outbreaks showed high-level relatedness with each other and major-level relatedness with strains that caused soft tissue infections during an epidemic in Brazil. We identified unique single-nucleotide polymorphisms in cystic fibrosis and soft tissue outbreak strains, separate single-nucleotide polymorphisms only in cystic fibrosis outbreak strains, and unique genomic traits for each subset of isolates. Our findings highlight the necessity of identifying M. abscessus to the subspecies level and screening all cystic fibrosis isolates for relatedness to these outbreak strains. We propose 2 diagnostic strategies that use partial sequencing of rpoB and secA1 genes and a multilocus sequence typing protocol. Download MP3 Length: 1:26 Three recently sequenced strains isolated from patients during an outbreak of Mycobacterium abscessus subsp. massiliense infections at a cystic fibrosis center in the United States were compared with 6 strains from an outbreak at a cystic fibrosis center in the United Kingdom and worldwide strains. Strains from the 2 cystic fibrosis outbreaks showed high-level relatedness with each other and major-level relatedness with strains that caused soft tissue infections during an epidemic in Brazil. We identified unique single-nucleotide polymorphisms in cystic fibrosis and soft tissue outbreak strains, separate single-nucleotide polymorphisms only in cystic fibrosis outbreak strains, and unique genomic traits for each subset of isolates. Our findings highlight the necessity of identifying M. abscessus to the subspecies level and screening all cystic fibrosis isolates for relatedness to these outbreak strains. We propose 2 diagnostic strategies that use partial sequencing of rpoB and secA1 genes and a multilocus sequence typing protocol. |
| Audience | Professional Academic |
| Author | Aitken, Moira L De Groote, Mary Ann Davidson, Rebecca M Agrawal, Sonia Brown-Elliott, Barbara A Su, Qi Zelazny, Adrian M Duarte, Rafael S Daugherty, Sean C Holland, Steven M Tettelin, Hervé Strong, Michael de Moura, Vinicius Calado Nogueira Parankush, Sushma Shallom, Shamira Hine, Erin Wallace, Jr, Richard J Hasan, Nabeeh A Fraser, Claire M Sampaio, Elizabeth P Olivier, Kenneth N Jackson, Mary |
| Author_xml | – sequence: 1 givenname: Hervé surname: Tettelin fullname: Tettelin, Hervé – sequence: 2 givenname: Rebecca M surname: Davidson fullname: Davidson, Rebecca M – sequence: 3 givenname: Sonia surname: Agrawal fullname: Agrawal, Sonia – sequence: 4 givenname: Moira L surname: Aitken fullname: Aitken, Moira L – sequence: 5 givenname: Shamira surname: Shallom fullname: Shallom, Shamira – sequence: 6 givenname: Nabeeh A surname: Hasan fullname: Hasan, Nabeeh A – sequence: 7 givenname: Michael surname: Strong fullname: Strong, Michael – sequence: 8 givenname: Vinicius Calado Nogueira surname: de Moura fullname: de Moura, Vinicius Calado Nogueira – sequence: 9 givenname: Mary Ann surname: De Groote fullname: De Groote, Mary Ann – sequence: 10 givenname: Rafael S surname: Duarte fullname: Duarte, Rafael S – sequence: 11 givenname: Erin surname: Hine fullname: Hine, Erin – sequence: 12 givenname: Sushma surname: Parankush fullname: Parankush, Sushma – sequence: 13 givenname: Qi surname: Su fullname: Su, Qi – sequence: 14 givenname: Sean C surname: Daugherty fullname: Daugherty, Sean C – sequence: 15 givenname: Claire M surname: Fraser fullname: Fraser, Claire M – sequence: 16 givenname: Barbara A surname: Brown-Elliott fullname: Brown-Elliott, Barbara A – sequence: 17 givenname: Richard J surname: Wallace, Jr fullname: Wallace, Jr, Richard J – sequence: 18 givenname: Steven M surname: Holland fullname: Holland, Steven M – sequence: 19 givenname: Elizabeth P surname: Sampaio fullname: Sampaio, Elizabeth P – sequence: 20 givenname: Kenneth N surname: Olivier fullname: Olivier, Kenneth N – sequence: 21 givenname: Mary surname: Jackson fullname: Jackson, Mary – sequence: 22 givenname: Adrian M surname: Zelazny fullname: Zelazny, Adrian M |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/24565502$$D View this record in MEDLINE/PubMed |
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| Keywords | relatedness bacteria geographically distant outbreaks United States cystic fibrosis tuberculosis and other mycobacteria United Kingdom outbreaks strains Mycobacterium abscessus subsp. massiliense Mycobacterium abscessus |
| Language | English |
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| SubjectTerms | bacteria Brazil Comparative analysis Cystic fibrosis Cystic Fibrosis - complications Disease Outbreaks Genes Genome, Bacterial Health aspects Humans Infection Multilocus Sequence Typing Mycobacterium - classification Mycobacterium - genetics Mycobacterium - isolation & purification Mycobacterium abscessus Mycobacterium abscessus subsp. massiliense Mycobacterium Infections - complications Mycobacterium Infections - diagnosis Mycobacterium Infections - epidemiology Mycobacterium Infections - microbiology Phylogeny Polymorphism, Single Nucleotide relatedness tuberculosis and other mycobacteria United Kingdom United States |
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| Title | High-level relatedness among Mycobacterium abscessus subsp. massiliense strains from widely separated outbreaks |
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