LAMPS: an analysis pipeline for sequence-specific ligation-mediated amplification reads

Ligation-Mediated Amplification (LMA) is a versatile biochemical tool for amplifying selected DNA sequences. LMA has increased in popularity due to its integration within chromosome conformation capture (5C) and chromatin immunoprecipitation (2C-ChIP) methodologies. The output of either 5C or 2C-ChI...

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Bibliographic Details
Published in:	BMC research notes Vol. 13; no. 1; p. 273
Main Authors:	Cameron, Christopher J F, Wang, Xue Q D, Dostie, Josée, Blanchette, Mathieu
Format:	Journal Article
Language:	English
Published:	England BioMed Central Ltd 03-06-2020 BioMed Central BMC
Subjects:	Analysis Bias Bioinformatics Bioinformatics pipeline Carbon Carbon copy-chromatin immunoprecipitation Chromatin Chromatin Immunoprecipitation Chromosome Conformation Capture Carbon Copy Chromosomes Computational biology Computer applications Conformation Data analysis Deoxyribonucleic acid DNA DNA sequencing Gene amplification Gene Library Gene mapping Genomes High-Throughput Nucleotide Sequencing - methods Humans Immunoprecipitation Integration Methods Multiplex Polymerase Chain Reaction - methods Multiplexed ligation-mediated amplification Nucleic Acid Amplification Techniques - methods Nucleotide sequence Operating systems Polymerase chain reaction Protocol Quality Control Research Note Sequence Analysis, DNA - methods Software Canada Carbon copy-chromatin immunoprecipitation Bioinformatics pipeline Multiplexed ligation-mediated amplification Chromosome Conformation Capture Carbon Copy
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