Efficient transposon mutagenesis mediated by an IPTG-controlled conditional suicide plasmid

• Published in: BMC microbiology Vol. 18; no. 1; pp. 158 - 11
• Main Authors: Naorem, Santa S, Han, Jin, Zhang, Stephanie Y, Zhang, Junyi, Graham, Lindsey B, Song, Angelou, Smith, Cameron V, Rashid, Fariha, Guo, Huatao
• Format: Journal Article
• Language: English
• Published: England BioMed Central Ltd 24-10-2018; BioMed Central; BMC
• Subjects: Acinetobacter; Acinetobacter - genetics; Bacteria; Cloning; Cloning, Molecular; Conditional suicide plasmid; Conjugation; Control stability; DNA Transposable Elements; E coli; Electroporation; Escherichia coli; Escherichia coli - genetics; Gene expression; Gene Library; Genetic engineering; Genetic Engineering - methods; Genetic Vectors; Genomes; Gram-negative bacteria; Gram-positive bacteria; High temperature; Host range; Insertion; Insertional mutagenesis; IPTG; Isopropyl Thiogalactoside - chemistry; Methodology; Microbiology; Mutagenesis; Mutagenesis, Insertional - methods; Mutants; Phenotypes; Plasmids; Plasmids - genetics; Proteins; Pseudomonas; Pseudomonas aeruginosa; Pseudomonas aeruginosa - genetics; Saturation mutagenesis; Species; Suicide; Suicides & suicide attempts; Target recognition; Temperature; Transposon mutagenesis; Transposons; Conditional suicide plasmid; IPTG; Acinetobacter; Transposon mutagenesis; Pseudomonas; Escherichia coli
• ISSN: 1471-2180; 1471-2180
• DOI: 10.1186/s12866-018-1319-0

Transposon mutagenesis is highly valuable for bacterial genetic and genomic studies. The transposons are usually delivered into host cells through conjugation or electroporation of a suicide plasmid. However, many bacterial species cannot be efficiently conjugated or transformed for transposon saturation mutagenesis. For this reason, temperature-sensitive (ts) plasmids have also been developed for transposon mutagenesis, but prolonged incubation at high temperatures to induce ts plasmid loss can be harmful to the hosts and lead to enrichment of mutants with adaptive genetic changes. In addition, the ts phenotype of a plasmid is often strain- or species-specific, as it may become non-ts or suicidal in different bacterial species.
We have engineered several conditional suicide plasmids that have a broad host range and whose loss is IPTG-controlled. One construct, which has the highest stability in the absence of IPTG induction, was then used as a curable vector to deliver hyperactive miniTn5 transposons for insertional mutagenesis. Our analyses show that these new tools can be used for efficient and regulatable transposon mutagenesis in Escherichia coli, Acinetobacter baylyi and Pseudomonas aeruginosa. In P. aeruginosa PAO1, we have used this method to generate a Tn5 insertion library with an estimated diversity of ~ 10
, which is ~ 2 logs larger than the best transposon insertional library of PAO1 and related Pseudomonas strains previously reported.
We have developed a number of IPTG-controlled conditional suicide plasmids. By exploiting one of them for transposon delivery, a highly efficient and broadly useful mutagenesis system has been developed. As the assay condition is mild, we believe that our methodology will have broad applications in microbiology research.