Clinical, genetic and structural delineation of RPL13-related spondyloepimetaphyseal dysplasia suggest extra-ribosomal functions of eL13

• Published in: Npj genomic medicine Vol. 8; no. 1; p. 39
• Main Authors: Jacob, Prince, Lindelöf, Hillevi, Rustad, Cecilie F., Sutton, Vernon Reid, Moosa, Shahida, Udupa, Prajna, Hammarsjö, Anna, Bhavani, Gandham SriLakshmi, Batkovskyte, Dominyka, Tveten, Kristian, Dalal, Ashwin, Horemuzova, Eva, Nordgren, Ann, Tham, Emma, Shah, Hitesh, Merckoll, Else, Orellana, Laura, Nishimura, Gen, Girisha, Katta M., Grigelioniene, Giedre
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 22-11-2023; Nature Publishing Group; Nature Portfolio
• Subjects: 692/308/2056; 692/4017; 692/420/2489/144; 692/699/2743/1530; Alternative splicing; Bioinformatics; Biomedical and Life Sciences; Biomedicine; Gene Function; Gene Therapy; Hereditary diseases; Human Genetics; Internal Medicine; Medical Genetics; Medicin och hälsovetenskap; Medicinsk genetik; Metaphyseal dysplasia; Mosaicism; mRNA; Phenotypes; Proteins; Spondylometaphyseal dysplasia
• DOI: 10.1038/s41525-023-00380-x
• EISSN: 2056-7944

Spondyloepimetaphyseal dysplasia with severe short stature,
RPL13
-related (SEMD-RPL13), MIM#618728), is a rare autosomal dominant disorder characterized by short stature and skeletal changes such as mild spondylar and epimetaphyseal dysplasia affecting primarily the lower limbs. The genetic cause was first reported in 2019 by Le Caignec et al., and six disease-causing variants in the gene coding for a ribosomal protein,
RPL13
(NM_000977.3) have been identified to date. This study presents clinical and radiographic data from 12 affected individuals aged 2–64 years from seven unrelated families, showing highly variable manifestations. The affected individuals showed a range from mild to severe short stature, retaining the same radiographic pattern of spondylar- and epi-metaphyseal dysplasia, but with varying severity of the hip and knee deformities. Two new missense variants, c.548 G>A, p.(Arg183His) and c.569 G>T, p.(Arg190Leu), and a previously known splice variant c.477+1G>A were identified, confirming mutational clustering in a highly specific RNA binding motif. Structural analysis and interpretation of the variants’ impact on the protein suggests that disruption of extra-ribosomal functions of the protein through binding of mRNA may play a role in the skeletal phenotype of SEMD-RPL13. In addition, we present gonadal and somatic mosaicism for the condition.