Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Culture-independent analyses of microbial communities have progressed dramatically in the last decade, particularly due to advances in methods for biological profiling via shotgun metagenomics. Opportunities for improvement continue to accelerate, with greater access to multi-omics, microbial refere...

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Bibliographic Details
Published in:	eLife Vol. 10
Main Authors:	Beghini, Francesco, McIver, Lauren J, Blanco-Míguez, Aitor, Dubois, Leonard, Asnicar, Francesco, Maharjan, Sagun, Mailyan, Ana, Manghi, Paolo, Scholz, Matthias, Thomas, Andrew Maltez, Valles-Colomer, Mireia, Weingart, George, Zhang, Yancong, Zolfo, Moreno, Huttenhower, Curtis, Franzosa, Eric A, Segata, Nicola
Format:	Journal Article
Language:	English
Published:	England eLife Sciences Publications Ltd 04-05-2021 eLife Sciences Publications, Ltd
Subjects:	Bacteria - classification Bacteria - genetics Bacteria - metabolism Biomarkers computational analysis Computational and Systems Biology Computational Biology - methods Consortia Documentation Evolution Gene expression Genomes Genomics Humans Metagenome Metagenomics Metagenomics - methods microbial genomics Microbiology and Infectious Disease microbiome Microbiomes Microbiota - genetics Microbiota - physiology Phylogenetics Phylogeny Quality control Research Personnel Ruminococcus - classification Ruminococcus - genetics Taxonomy Tools and Resources Workflow computational biology systems biology infectious disease metagenomics microbiology computational analysis human microbiome microbial genomics
Online Access:	Get full text
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