A tiling resolution DNA microarray with complete coverage of the human genome
We constructed a tiling resolution array consisting of 32,433 overlapping BAC clones covering the entire human genome. This increases our ability to identify genetic alterations and their boundaries throughout the genome in a single comparative genomic hybridization (CGH) experiment. At this tiling...
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| Published in: | Nature genetics Vol. 36; no. 3; pp. 299 - 303 |
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| Main Authors: | , , , , , , , , , , , , |
| Format: | Journal Article |
| Language: | English |
| Published: |
London
Nature Publishing Group
01-03-2004
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| Subjects: | |
| Online Access: | Get full text |
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| Abstract | We constructed a tiling resolution array consisting of 32,433 overlapping BAC clones covering the entire human genome. This increases our ability to identify genetic alterations and their boundaries throughout the genome in a single comparative genomic hybridization (CGH) experiment. At this tiling resolution, we identified minute DNA alterations not previously reported. These alterations include microamplifications and deletions containing oncogenes, tumor-suppressor genes and new genes that may be associated with multiple tumor types. Our findings show the need to move beyond conventional marker-based genome comparison approaches, that rely on inference of continuity between interval markers. Our submegabase resolution tiling set for array CGH (SMRT array) allows comprehensive assessment of genomic integrity and thereby the identification of new genes associated with disease. |
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| AbstractList | We constructed a tiling resolution array consisting of 32,433 overlapping BAC clones covering the entire human genome. This increases our ability to identify genetic alterations and their boundaries throughout the genome in a single comparative genomic hybridization (CGH) experiment. At this tiling resolution, we identified minute DNA alterations not previously reported. These alterations include microamplifications and deletions containing oncogenes, tumor-suppressor genes and new genes that may be associated with multiple tumor types. Our findings show the need to move beyond conventional marker-based genome comparison approaches, that rely on inference of continuity between interval markers. Our submegabase resolution tiling set for array CGH (SMRT array) allows comprehensive assessment of genomic integrity and thereby the identification of new genes associated with disease. |
| Audience | Academic |
| Author | Ling, Victor Lam, Wan L MacAulay, Calum Ishkanian, Adrian S Coe, Bradley P deLeeuw, Ronald J Marra, Marco A Malloff, Chad A Pinkel, Daniel Watson, Spencer K Chi, Bryan Albertson, Donna G Snijders, Antoine |
| Author_xml | – sequence: 1 givenname: Wan L surname: Lam fullname: Lam, Wan L organization: British Columbia Cancer Research Centre – sequence: 2 givenname: Adrian S surname: Ishkanian fullname: Ishkanian, Adrian S organization: British Columbia Cancer Research Centre – sequence: 3 givenname: Chad A surname: Malloff fullname: Malloff, Chad A organization: British Columbia Cancer Research Centre – sequence: 4 givenname: Spencer K surname: Watson fullname: Watson, Spencer K organization: British Columbia Cancer Research Centre – sequence: 5 givenname: Ronald J surname: deLeeuw fullname: deLeeuw, Ronald J organization: British Columbia Cancer Research Centre – sequence: 6 givenname: Bryan surname: Chi fullname: Chi, Bryan organization: British Columbia Cancer Research Centre – sequence: 7 givenname: Bradley P surname: Coe fullname: Coe, Bradley P organization: British Columbia Cancer Research Centre – sequence: 8 givenname: Antoine surname: Snijders fullname: Snijders, Antoine organization: UCSF Comprehensive Cancer Center – sequence: 9 givenname: Donna G surname: Albertson fullname: Albertson, Donna G organization: UCSF Comprehensive Cancer Center – sequence: 10 givenname: Daniel surname: Pinkel fullname: Pinkel, Daniel organization: UCSF Comprehensive Cancer Center – sequence: 11 givenname: Marco A surname: Marra fullname: Marra, Marco A organization: Genome Sciences Centre, British Columbia Cancer Agency – sequence: 12 givenname: Victor surname: Ling fullname: Ling, Victor organization: British Columbia Cancer Research Centre – sequence: 13 givenname: Calum surname: MacAulay fullname: MacAulay, Calum organization: British Columbia Cancer Research Centre |
| BackLink | http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15675461$$DView record in Pascal Francis https://www.ncbi.nlm.nih.gov/pubmed/14981516$$D View this record in MEDLINE/PubMed |
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| CODEN | NGENEC |
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| SubjectTerms | Biological and medical sciences Boundaries Chromosome mapping Chromosomes, Artificial, Bacterial Deoxyribonucleic acid Diverse techniques DNA DNA microarrays Fundamental and applied biological sciences. Psychology Gene Dosage Genome, Human Genomics Human genome Humans Hybridization Methods Molecular and cellular biology Nucleic Acid Hybridization Oligonucleotide Array Sequence Analysis - methods Physiological aspects Sensitivity and Specificity Tumor Cells, Cultured Tumors |
| Title | A tiling resolution DNA microarray with complete coverage of the human genome |
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