Inferences about population dynamics from count data using multistate models: a comparison to capture–recapture approaches

• Published in: Ecology and evolution Vol. 4; no. 4; pp. 417 - 426
• Main Authors: Zipkin, Elise F., Sillett, T. Scott, Grant, Evan H. Campbell, Chandler, Richard B., Royle, J. Andrew
• Format: Journal Article
• Language: English
• Published: England John Wiley & Sons, Inc 01-02-2014; John Wiley & Sons Ltd
• Subjects: Abundance; Accounting; Age; Black‐throated blue warbler (Setophaga caerulescens); Breeding grounds; Capture-recapture studies; Carrying capacity; Data collection; Demographics; Endangered & extinct species; Estimates; Estimation; Heterogeneity; Immigration; Life history; Local population; N‐mixture model; Original Research; Population density; Population growth; Population statistics; Probabilistic models; Recruitment; Sea level; Setophaga; state‐space model; structured populations; Survival; Viability; Wildlife; United States > US; New Hampshire; USA, New Hampshire, Hubbard Brook Experimental Forest; USA, New Hampshire; state-space model; Black-throated blue warbler (Setophaga caerulescens); N-mixture model; structured populations
• ISSN: 2045-7758; 2045-7758
• DOI: 10.1002/ece3.942

Wildlife populations consist of individuals that contribute disproportionately to growth and viability. Understanding a population's spatial and temporal dynamics requires estimates of abundance and demographic rates that account for this heterogeneity. Estimating these quantities can be difficult, requiring years of intensive data collection. Often, this is accomplished through the capture and recapture of individual animals, which is generally only feasible at a limited number of locations. In contrast, N‐mixture models allow for the estimation of abundance, and spatial variation in abundance, from count data alone. We extend recently developed multistate, open population N‐mixture models, which can additionally estimate demographic rates based on an organism's life history characteristics. In our extension, we develop an approach to account for the case where not all individuals can be assigned to a state during sampling. Using only state‐specific count data, we show how our model can be used to estimate local population abundance, as well as density‐dependent recruitment rates and state‐specific survival. We apply our model to a population of black‐throated blue warblers (Setophaga caerulescens) that have been surveyed for 25 years on their breeding grounds at the Hubbard Brook Experimental Forest in New Hampshire, USA. The intensive data collection efforts allow us to compare our estimates to estimates derived from capture–recapture data. Our model performed well in estimating population abundance and density‐dependent rates of annual recruitment/immigration. Estimates of local carrying capacity and per capita recruitment of yearlings were consistent with those published in other studies. However, our model moderately underestimated annual survival probability of yearling and adult females and severely underestimates survival probabilities for both of these male stages. The most accurate and precise estimates will necessarily require some amount of intensive data collection efforts (such as capture–recapture). Integrated population models that combine data from both intensive and extensive sources are likely to be the most efficient approach for estimating demographic rates at large spatial and temporal scales.
We extend recently developed multistate, open population N‐mixture models, which can additionally estimate demographic rates based on an organism's life history characteristics. In our extension, we develop an approach to account for the case where not all individuals can be assigned to a state during sampling. Using only state‐specific count data, we show how our model can be used to estimate local population abundance, as well as density‐dependent recruitment rates and state‐specific survival.