Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
Ruminant livestock are important sources of human food and global greenhouse gas emissions. Feed degradation and methane formation by ruminants rely on metabolic interactions between rumen microbes and affect ruminant productivity. Rumen and camelid foregut microbial community composition was determ...
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| Published in: | Scientific reports Vol. 5; no. 1; p. 14567 |
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| Main Authors: | , , , , , |
| Format: | Journal Article |
| Language: | English |
| Published: |
London
Nature Publishing Group UK
09-10-2015
Nature Publishing Group |
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| Online Access: | Get full text |
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| Abstract | Ruminant livestock are important sources of human food and global greenhouse gas emissions. Feed degradation and methane formation by ruminants rely on metabolic interactions between rumen microbes and affect ruminant productivity. Rumen and camelid foregut microbial community composition was determined in 742 samples from 32 animal species and 35 countries, to estimate if this was influenced by diet, host species, or geography. Similar bacteria and archaea dominated in nearly all samples, while protozoal communities were more variable. The dominant bacteria are poorly characterised, but the methanogenic archaea are better known and highly conserved across the world. This universality and limited diversity could make it possible to mitigate methane emissions by developing strategies that target the few dominant methanogens. Differences in microbial community compositions were predominantly attributable to diet, with the host being less influential. There were few strong co-occurrence patterns between microbes, suggesting that major metabolic interactions are non-selective rather than specific. |
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| AbstractList | Ruminant livestock are important sources of human food and global greenhouse gas emissions. Feed degradation and methane formation by ruminants rely on metabolic interactions between rumen microbes and affect ruminant productivity. Rumen and camelid foregut microbial community composition was determined in 742 samples from 32 animal species and 35 countries, to estimate if this was influenced by diet, host species, or geography. Similar bacteria and archaea dominated in nearly all samples, while protozoal communities were more variable. The dominant bacteria are poorly characterised, but the methanogenic archaea are better known and highly conserved across the world. This universality and limited diversity could make it possible to mitigate methane emissions by developing strategies that target the few dominant methanogens. Differences in microbial community compositions were predominantly attributable to diet, with the host being less influential. There were few strong co-occurrence patterns between microbes, suggesting that major metabolic interactions are non-selective rather than specific. |
| ArticleNumber | 14567 |
| Author | Young, Wayne Jonker, Arjan Ganesh, Siva Janssen, Peter H. Cox, Faith Henderson, Gemma |
| Author_xml | – sequence: 1 givenname: Gemma surname: Henderson fullname: Henderson, Gemma organization: AgResearch Limited, Grasslands Research Centre – sequence: 2 givenname: Faith surname: Cox fullname: Cox, Faith organization: AgResearch Limited, Grasslands Research Centre – sequence: 3 givenname: Siva surname: Ganesh fullname: Ganesh, Siva organization: AgResearch Limited, Grasslands Research Centre – sequence: 4 givenname: Arjan surname: Jonker fullname: Jonker, Arjan organization: AgResearch Limited, Grasslands Research Centre – sequence: 5 givenname: Wayne surname: Young fullname: Young, Wayne organization: AgResearch Limited, Grasslands Research Centre – sequence: 7 givenname: Peter H. surname: Janssen fullname: Janssen, Peter H. organization: AgResearch Limited, Grasslands Research Centre |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26449758$$D View this record in MEDLINE/PubMed https://res.slu.se/id/publ/73852$$DView record from Swedish Publication Index |
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| Copyright | The Author(s) 2015 Copyright Nature Publishing Group Oct 2015 Copyright © 2015, Macmillan Publishers Limited 2015 Macmillan Publishers Limited Wageningen University & Research |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Present addresses: AgResearch Ltd. Grasslands Research Centre, Tennent Drive, Palmerston North 4442, New Zealand. Present addresses: ¶Instituto de Histología y Embriología de Mendoza, Universidad Nacional de Cuyo, Centro Universitario, Parque General San Martín S/N, 5500 Mendoza, Argentina. Present addresses: ǂInstitute of Animal Nutrition and Nutritional Physiology, Justus Liebig University Giessen, 35392 Giessen, Germany. Present addresses: ¥Research Institute of Organic Agriculture (FiBL), CH-5070 Frick, Switzerland. Present addresses: #CSIRO, Canberra, ACT 2601, Australia. Present addresses: ǁSchool of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, Arizona, USA. Present addresses: CSIRO Plant Industry, Canberra, ACT 2601, Australia. Present addresses: §Institute of Biological, Rural and Environmental Sciences, Aberystwyth University, Gogerddan, SY23 3EE, UK. Present addresses: ΦDepartment of Chemistry and Bioscience, Aalborg University, DK-9220 Aalborg East, Denmark. |
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| Title | Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range |
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