Clinical utility of circulating cell-free DNA in advanced colorectal cancer

• Published in: PloS one Vol. 12; no. 8; p. e0183949
• Main Authors: Pereira, Allan A Lima, Morelli, Maria Pia, Overman, Michael, Kee, Bryan, Fogelman, David, Vilar, Eduardo, Shureiqi, Imad, Raghav, Kanwal, Eng, Cathy, Manuel, Shanequa, Crosby, Shadarra, Wolff, Robert A, Banks, Kimberly, Lanman, Richard, Talasaz, AmirAli, Kopetz, Scott, Morris, Van
• Format: Journal Article
• Language: English
• Published: United States Public Library of Science 29-08-2017; Public Library of Science (PLoS)
• Subjects: Adult; Aged; Biology and Life Sciences; Biomarkers; Biomarkers, Tumor - blood; Biomarkers, Tumor - genetics; Biopsy; Breast cancer; Cancer; Chemical compounds; Clinical trials; Colorectal cancer; Colorectal carcinoma; Colorectal Neoplasms - blood; Colorectal Neoplasms - genetics; Colorectal Neoplasms - pathology; Deoxyribonucleic acid; DNA; DNA - blood; Female; Formaldehyde; Gene sequencing; High-Throughput Nucleotide Sequencing; Humans; Lung cancer; Male; Medical personnel; Medicine and Health Sciences; Metastases; Metastasis; Middle Aged; Mutation; Oncology; Paraffin; Patient Satisfaction; Patients; People and Places; Pharmacology; Physicians; Precision medicine; Quality of care; Quality of Health Care; Research and Analysis Methods; Retrospective Studies; United States > US; Texas; California
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0183949

Circulating cell-free DNA (cfDNA) isolated from the plasma of cancer patients (pts) has been shown to reflect the genomic mutation profile of the tumor. However, physician and patient assessment of clinical utility of these assays in patients with metastatic colorectal cancer (mCRC) has not been previously described.
Patients were prospectively consented to a prospective genomic matching protocol (Assessment of Targeted Therapies Against Colorectal Cancer [ATTACC]), with collection of blood for cfDNA extraction and sequencing of a 54-gene panel in a CLIA-certified lab. Formalin-fixed, paraffin-embedded (FFPE) tissue from prior resections or biopsies underwent 50-gene sequencing. Results from both assays were returned to the treating physicians for patient care and clinical trial selection. Follow-up surveys of treating physicians and chart reviews assessed clinical utility.
128 mCRC pts were enrolled between 6/2014 and 1/2015. Results were returned in median of 13 and 26 days for cfDNA and FFPE sequencing, respectively. With cfDNA sequencing, 78% (100/128) of samples had a detectable somatic genomic alteration. 50% of cfDNA cases had potentially actionable alterations, and 60% of these could be genomically matched to at least one clinical trial in our institution. 50% (15/30) of these pts enrolled onto an identified matched trial. Physicians reported that the cfDNA testing improved the quality of care they could provide in 73% of the cases, and that 89% of pts reported greater satisfaction with the efforts to personalize experimental therapeutic agents.
cfDNA sequencing can provide timely information on potentially actionable mutations and amplifications, thereby facilitating clinical trial enrollment and improving the perceived quality of care.