Increased contribution of parasites in microbial eukaryotic communities of different Aegean Sea coastal systems

• Published in: PeerJ (San Francisco, CA) Vol. 11; p. e16655
• Main Authors: Meziti, Alexandra, Smeti, Evangelia, Daniilides, Daniil, Spatharis, Sofie, Tsirtsis, George, Kormas, Konstantinos A
• Format: Journal Article
• Language: English
• Published: United States PeerJ. Ltd 19-12-2023; PeerJ, Inc; PeerJ Inc
• Subjects: 18S rRNA; Animals; Biodiversity; Coastal ecosystems; Coastal systems; Coasts; Community; Community structure; Environmental conditions; Environmental factors; Eukaryota - genetics; Food chains; Food chains (Ecology); Food webs; Microbiota; Nitrogen; Parasites; Parasites - genetics; Phosphorus; Plankton; Protist communities; Rare species; RNA; RNA, Ribosomal, 18S - genetics; rRNA 18S; Salinity; Seasonal variations; Specialization; Syndiniales; Taxonomy; Aegean Sea; Mediterranean Sea; France; Coastal systems; Parasites; Protist communities; 18S rRNA
• ISSN: 2167-8359; 2167-8359
• DOI: 10.7717/peerj.16655

Protistan communities have a major contribution to biochemical processes and food webs in coastal ecosystems. However, related studies are scarce and usually limited in specific groups and/or sites. The present study examined the spatial structure of the entire protistan community in seven different gulfs and three different depths in a regional Mediterranean Sea, aiming to define taxa that are important for differences detected in the marine microbial network across the different gulfs studied as well as their trophic interactions.
Protistan community structure analysis was based on the diversity of the V2-V3 hypervariable region of the 18S rRNA gene. Operational taxonomic units (OTUs) were identified using a 97% sequence identity threshold and were characterized based on their taxonomy, trophic role, abundance and niche specialization level. The differentially abundant, between gulfs, OTUs were considered for all depths and interactions amongst them were calculated, with statistic and network analysis.
It was shown that Dinophyceae, Bacillariophyta and Syndiniales were the most abundant groups, prevalent in all sites and depths
Gulfs separation was more striking at surface corroborating with changes in environmental factors, while it was less pronounced in higher depths. The study of differentially abundant, between gulfs, OTUs revealed that the strongest biotic interactions in all depths occurred between parasite species (mainly
) and other trophic groups. Most of these species were generalists but not abundant highlighting the importance of rare species in protistan community assemblage.
Overall this study revealed the emergence of parasites as important contributors in protistan network regulation regardless of depth.