Molecular diversity of Alphacoronavirus 1 in dogs and cats in Colombia
Alphacoronavirus 1 (subgenus Tegacovirus, genus Alphacoronavirus, family Coronaviridae), which encompasses transmissible gastroenteritis virus (TGEV), feline coronavirus (FCoV) and canine coronavirus (CCoV), is an important pathogen that can cause severe gastroenteritis and is distributed worldwide....
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| Published in: | Heliyon Vol. 6; no. 7; p. e04381 |
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01-07-2020
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| Abstract | Alphacoronavirus 1 (subgenus Tegacovirus, genus Alphacoronavirus, family Coronaviridae), which encompasses transmissible gastroenteritis virus (TGEV), feline coronavirus (FCoV) and canine coronavirus (CCoV), is an important pathogen that can cause severe gastroenteritis and is distributed worldwide. CCoV has two different genotypes: CCoV type I, which has a high identity with FCoV-I, and CCoV type II, which is divided into two subtypes, CCoV IIa (pantropic) and CCoV IIb, which is related to FCoV-II and has been involved in multiple recombination events. Between 2014 and 2018, 43 fecal samples from puppies and young dogs under 1 year of age with hemorrhagic enteritis and from 5 cats under 2 years of age with ascites or thoracic effusion were collected by a private veterinary practice in Bogotá, Colombia. A screening for Coronavirus via RT-PCR (nsp12) and PCR amplification of Canine protoparvovirus (VP1) revealed 27.1% (13/49) and 72.9% (35/49) positive samples, respectively. Positive samples for coronavirus were tested for M, N, S and the sequences grouped in the FCoV, CCoV-I and CCoV-IIb clusters that were distant from the pantropic type (IIa). The N gene formed two clusters, one exclusively with samples from this study in subtype II and another with strains in subtype I. For gene S (subtype I), the samples clustered with the Brazilian samples, while samples positive for S subtype IIb grouped into a cluster distinct from the other reference sequences. The prevalence of coronaviruses identified in this study is within the range reported by different countries worldwide.
Genetics; Microbiology; Virology; Biocomputational method; Viral disease; Viral genetics; Phylogeny; Epidemiology; Coronavirus; Alphacoronavirus 1; Dogs; Cats; Colombia; Phylogenetic relationship. |
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| AbstractList | Alphacoronavirus 1 (subgenus Tegacovirus, genus Alphacoronavirus, family Coronaviridae), which encompasses transmissible gastroenteritis virus (TGEV), feline coronavirus (FCoV) and canine coronavirus (CCoV), is an important pathogen that can cause severe gastroenteritis and is distributed worldwide. CCoV has two different genotypes: CCoV type I, which has a high identity with FCoV-I, and CCoV type II, which is divided into two subtypes, CCoV IIa (pantropic) and CCoV IIb, which is related to FCoV-II and has been involved in multiple recombination events. Between 2014 and 2018, 43 fecal samples from puppies and young dogs under 1 year of age with hemorrhagic enteritis and from 5 cats under 2 years of age with ascites or thoracic effusion were collected by a private veterinary practice in Bogotá, Colombia. A screening for Coronavirus via RT-PCR (nsp12) and PCR amplification of Canine protoparvovirus (VP1) revealed 27.1% (13/49) and 72.9% (35/49) positive samples, respectively. Positive samples for coronavirus were tested for M, N, S and the sequences grouped in the FCoV, CCoV-I and CCoV-IIb clusters that were distant from the pantropic type (IIa). The N gene formed two clusters, one exclusively with samples from this study in subtype II and another with strains in subtype I. For gene S (subtype I), the samples clustered with the Brazilian samples, while samples positive for S subtype IIb grouped into a cluster distinct from the other reference sequences. The prevalence of coronaviruses identified in this study is within the range reported by different countries worldwide. Alphacoronavirus 1 (subgenus Tegacovirus, genus Alphacoronavirus , family Coronaviridae ), which encompasses transmissible gastroenteritis virus (TGEV), feline coronavirus (FCoV) and canine coronavirus (CCoV), is an important pathogen that can cause severe gastroenteritis and is distributed worldwide. CCoV has two different genotypes: CCoV type I, which has a high identity with FCoV-I, and CCoV type II, which is divided into two subtypes, CCoV IIa (pantropic) and CCoV IIb, which is related to FCoV-II and has been involved in multiple recombination events. Between 2014 and 2018, 43 fecal samples from puppies and young dogs under 1 year of age with hemorrhagic enteritis and from 5 cats under 2 years of age with ascites or thoracic effusion were collected by a private veterinary practice in Bogotá, Colombia. A screening for Coronavirus via RT-PCR (nsp12) and PCR amplification of Canine protoparvovirus (VP1) revealed 27.1% (13/49) and 72.9% (35/49) positive samples, respectively. Positive samples for coronavirus were tested for M, N, S and the sequences grouped in the FCoV, CCoV-I and CCoV-IIb clusters that were distant from the pantropic type (IIa). The N gene formed two clusters, one exclusively with samples from this study in subtype II and another with strains in subtype I. For gene S (subtype I), the samples clustered with the Brazilian samples, while samples positive for S subtype IIb grouped into a cluster distinct from the other reference sequences. The prevalence of coronaviruses identified in this study is within the range reported by different countries worldwide. Genetics; Microbiology; Virology; Biocomputational method; Viral disease; Viral genetics; Phylogeny; Epidemiology; Coronavirus; Alphacoronavirus 1 ; Dogs; Cats; Colombia; Phylogenetic relationship. Alphacoronavirus 1 (subgenus Tegacovirus, genus Alphacoronavirus, family Coronaviridae), which encompasses transmissible gastroenteritis virus (TGEV), feline coronavirus (FCoV) and canine coronavirus (CCoV), is an important pathogen that can cause severe gastroenteritis and is distributed worldwide. CCoV has two different genotypes: CCoV type I, which has a high identity with FCoV-I, and CCoV type II, which is divided into two subtypes, CCoV IIa (pantropic) and CCoV IIb, which is related to FCoV-II and has been involved in multiple recombination events. Between 2014 and 2018, 43 fecal samples from puppies and young dogs under 1 year of age with hemorrhagic enteritis and from 5 cats under 2 years of age with ascites or thoracic effusion were collected by a private veterinary practice in Bogotá, Colombia. A screening for Coronavirus via RT-PCR (nsp12) and PCR amplification of Canine protoparvovirus (VP1) revealed 27.1% (13/49) and 72.9% (35/49) positive samples, respectively. Positive samples for coronavirus were tested for M, N, S and the sequences grouped in the FCoV, CCoV-I and CCoV-IIb clusters that were distant from the pantropic type (IIa). The N gene formed two clusters, one exclusively with samples from this study in subtype II and another with strains in subtype I. For gene S (subtype I), the samples clustered with the Brazilian samples, while samples positive for S subtype IIb grouped into a cluster distinct from the other reference sequences. The prevalence of coronaviruses identified in this study is within the range reported by different countries worldwide. Genetics; Microbiology; Virology; Biocomputational method; Viral disease; Viral genetics; Phylogeny; Epidemiology; Coronavirus; Alphacoronavirus 1; Dogs; Cats; Colombia; Phylogenetic relationship. |
| ArticleNumber | e04381 |
| Author | Reyes Romero, D.P. Velandia Muñoz, A. Taniwaki, S.A. Arango Fajardo, D.F. de Souza Silva, S.O. Brandão, P.E. Santana-Clavijo, N.F. |
| Author_xml | – sequence: 1 givenname: N.F. surname: Santana-Clavijo fullname: Santana-Clavijo, N.F. email: nfsantanac@usp.br organization: Department of Preventive Veterinary Medicine and Animal Health, College of Veterinary Medicine, University of São Paulo, Av Professor Doutor Orlando Marques de Paiva, 87, 05508-270, São Paulo, SP Brazil – sequence: 2 givenname: D.P. surname: Reyes Romero fullname: Reyes Romero, D.P. organization: Vida Animal SV, Bogotá, Colombia – sequence: 3 givenname: D.F. surname: Arango Fajardo fullname: Arango Fajardo, D.F. organization: Clinivet, Veterinary Clinic, Bogotá, Colombia – sequence: 4 givenname: A. surname: Velandia Muñoz fullname: Velandia Muñoz, A. organization: Clinivet, Veterinary Clinic, Bogotá, Colombia – sequence: 5 givenname: S.A. surname: Taniwaki fullname: Taniwaki, S.A. organization: Department of Preventive Veterinary Medicine and Animal Health, College of Veterinary Medicine, University of São Paulo, Av Professor Doutor Orlando Marques de Paiva, 87, 05508-270, São Paulo, SP Brazil – sequence: 6 givenname: S.O. surname: de Souza Silva fullname: de Souza Silva, S.O. organization: Department of Preventive Veterinary Medicine and Animal Health, College of Veterinary Medicine, University of São Paulo, Av Professor Doutor Orlando Marques de Paiva, 87, 05508-270, São Paulo, SP Brazil – sequence: 7 givenname: P.E. surname: Brandão fullname: Brandão, P.E. organization: Department of Preventive Veterinary Medicine and Animal Health, College of Veterinary Medicine, University of São Paulo, Av Professor Doutor Orlando Marques de Paiva, 87, 05508-270, São Paulo, SP Brazil |
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| Cites_doi | 10.1371/journal.pone.0111779 10.1111/j.1748-5827.2011.01178.x 10.1371/journal.pone.0106534 10.1016/S0166-0934(99)00017-8 10.1016/j.vetmic.2013.10.002 10.1016/j.cvsm.2008.02.008 10.3390/v6083363 10.1007/s00705-006-0840-x 10.1016/j.rvsc.2010.05.027 10.3201/eid1601.090726 10.1136/vr.164.7.213 10.1016/j.virusres.2006.10.004 10.1016/j.tvjl.2014.09.006 10.1128/JCM.42.4.1797-1799.2004 10.1016/j.virusres.2015.07.018 10.1016/j.virusres.2006.12.006 10.1093/molbev/msw054 10.1016/S0165-2427(99)00100-2 10.1128/JCM.02466-12 10.1128/JVI.01937-08 10.1016/j.virol.2017.12.027 10.1016/j.virol.2012.04.013 10.1016/j.virusres.2017.08.008 10.1016/j.cvsm.2011.07.005 10.1016/j.meegid.2013.01.014 |
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| Keywords | Colombia Alphacoronavirus 1 Cats Microbiology Viral genetics Phylogeny Epidemiology Virology Phylogenetic relationship Coronavirus Viral disease Dogs Genetics Biocomputational method |
| Language | English |
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| References | Navarro, Nair, Peda, Aung, Ashwinie, Gallagher, Malik, Kobayashi, Ghosh (bib18) 2017; 240 Muhire, Martin, Murrell, Khoosal, Golden (bib17) 2015; 1 Decaro, Cordonnier, Demeter, Egberink, Elia, Grellet, Le Poder, Mari, Martella, Ntafis, Von Reitzenstein, Rottier, Rusvai, Shields, Xylouri, Xu, Buonavoglia (bib6) 2013; 51 Costa, Xavier de Castro, de Oliveira Bottino, de Nasser Cubel Garcia (bib3) 2014; 168 Decaro, Buonavoglia (bib5) 2011; 41 Decaro, Mari, Elia, Lanave, Dowgier, Colaianni, Martella, Buonavoglia (bib9) 2015; 210 Ntafis, Mari, Decaro, Papanastassopoulou, Pardali, Rallis, Kanellos, Buonavoglia, Xylouri (bib19) 2013; 16 Pérez, Calleros, Marandino, Sarute, Iraola, Grecco, Blanc, Vignuzzi, Isakov, Shomron, Carrau, Hernández, Francia, Sosa, Tomás, Panzera (bib20) 2014; 9 Demeter, Gál, Palade, Rusvai (bib11) 2009; 164 Licitra, Duhamel, Whittaker (bib16) 2014; 6 Pratelli, Decaro, Tinelli, Martella, Elia, Tempesta, Cirone, Buonavoglia (bib29) 2004; 42 Erles, Shiu, Brownlie (bib12) 2007; 124 Leutenegger, Mislin, Sigrist, Ehrengruber, Hoftmann-Lehmann, Lutz (bib27) 1999; 71 Soma, Ohinata, Ishii, Takahashi, Taharaguchi, Hara (bib23) 2011; 90 Kumar, Stecher, Tamura (bib15) 2016; 33 Chomczynski (bib2) 1993; 15 Terada, Matsui, Noguchi, Kuwata, Shimoda, Soma, Mochizuki, Maeda (bib24) 2014; 9 Escutenaire, Mohamed, Isaksson, Thorén, Klingeborn, Belák, Berg, Blomberg (bib13) 2007; 152 Erles, Brownlie (bib30) 2008; 38 Pinto, Barros, Budaszewski, Weber, Mata, Antunes, Boabaid, Wouters, Driemeier, Brandão, Canal (bib21) 2014; 202 Alves, Granados, da Budaszewski, Streck, Weber, Cibulski, Pinto, Ikuta, Canal (bib1) 2018; 1 De Barros, Pinto, Oliveira, Silva (bib4) 2018; 5 Zicola, Jolly, Mathijs, Ziant, Decaro, Mari, Thiry (bib26) 2012; 53 Decaro, Martella, Elia, Campolo, Desario, Cirone, Tempesta, Buonavoglia (bib10) 2007; 125 Regan, Millet, Tse, Chillag, Rinaldi, Licitra, Dubovi, Town, Whittaker (bib22) 2012; 430 Jaimes, Whittaker (bib14) 2018; 517 Pratelli, Tempesta, Greco, Martella, Buonavoglia (bib28) 1999; 80 Decaro, Mari, Campolo, Lorusso, Camero, Elia, Martella, Cordioli, Enjuanes, Buonavoglia (bib7) 2009; 83 Wang, Li, Guo, Wei, Geng, Wang, Wang, Zhao, Su, Liu, Zhang, Feng, Sun (bib25) 2016; 11 Decaro, Mari, Elia, Addie, Camero, Lucente, Martella, Buonavoglia (bib8) 2010; 16 Muhire (10.1016/j.heliyon.2020.e04381_bib17) 2015; 1 Decaro (10.1016/j.heliyon.2020.e04381_bib6) 2013; 51 Zicola (10.1016/j.heliyon.2020.e04381_bib26) 2012; 53 De Barros (10.1016/j.heliyon.2020.e04381_bib4) 2018; 5 Decaro (10.1016/j.heliyon.2020.e04381_bib7) 2009; 83 Pinto (10.1016/j.heliyon.2020.e04381_bib21) 2014; 202 Regan (10.1016/j.heliyon.2020.e04381_bib22) 2012; 430 Licitra (10.1016/j.heliyon.2020.e04381_bib16) 2014; 6 Pérez (10.1016/j.heliyon.2020.e04381_bib20) 2014; 9 Decaro (10.1016/j.heliyon.2020.e04381_bib9) 2015; 210 Leutenegger (10.1016/j.heliyon.2020.e04381_bib27) 1999; 71 Erles (10.1016/j.heliyon.2020.e04381_bib12) 2007; 124 Wang (10.1016/j.heliyon.2020.e04381_bib25) 2016; 11 Navarro (10.1016/j.heliyon.2020.e04381_bib18) 2017; 240 Pratelli (10.1016/j.heliyon.2020.e04381_bib28) 1999; 80 Escutenaire (10.1016/j.heliyon.2020.e04381_bib13) 2007; 152 Decaro (10.1016/j.heliyon.2020.e04381_bib8) 2010; 16 Demeter (10.1016/j.heliyon.2020.e04381_bib11) 2009; 164 Kumar (10.1016/j.heliyon.2020.e04381_bib15) 2016; 33 Jaimes (10.1016/j.heliyon.2020.e04381_bib14) 2018; 517 Pratelli (10.1016/j.heliyon.2020.e04381_bib29) 2004; 42 Costa (10.1016/j.heliyon.2020.e04381_bib3) 2014; 168 Terada (10.1016/j.heliyon.2020.e04381_bib24) 2014; 9 Erles (10.1016/j.heliyon.2020.e04381_bib30) 2008; 38 Chomczynski (10.1016/j.heliyon.2020.e04381_bib2) 1993; 15 Ntafis (10.1016/j.heliyon.2020.e04381_bib19) 2013; 16 Alves (10.1016/j.heliyon.2020.e04381_bib1) 2018; 1 Soma (10.1016/j.heliyon.2020.e04381_bib23) 2011; 90 Decaro (10.1016/j.heliyon.2020.e04381_bib10) 2007; 125 Decaro (10.1016/j.heliyon.2020.e04381_bib5) 2011; 41 |
| References_xml | – volume: 210 start-page: 100 year: 2015 end-page: 105 ident: bib9 article-title: Full-length genome analysis of canine coronavirus type I publication-title: Virus Res. contributor: fullname: Buonavoglia – volume: 41 start-page: 1121 year: 2011 end-page: 1132 ident: bib5 article-title: Canine coronavirus: not only an enteric pathogen publication-title: Vet. Clin. North Am. Small Anim. Pract. contributor: fullname: Buonavoglia – volume: 125 start-page: 54 year: 2007 end-page: 60 ident: bib10 article-title: Molecular characterisation of the virulent canine coronavirus CB/05 strain publication-title: Virus Res. contributor: fullname: Buonavoglia – volume: 6 start-page: 3363 year: 2014 end-page: 3376 ident: bib16 article-title: Canine enteric coronaviruses: emerging viral pathogens with distinct recombinant spike proteins publication-title: Viruses contributor: fullname: Whittaker – volume: 80 start-page: 11 year: 1999 end-page: 15 ident: bib28 article-title: Development of a nested PCR assay for the detection of canine coronavirus publication-title: J. Virol. Method. contributor: fullname: Buonavoglia – volume: 53 start-page: 297 year: 2012 end-page: 300 ident: bib26 article-title: Fatal outbreaks in dogs associated with pantropic canine coronavirus in France and Belgium publication-title: J. Small Anim. Pract. contributor: fullname: Thiry – volume: 9 year: 2014 ident: bib20 article-title: Phylogenetic and genome-wide deep-sequencing analyses of canine parvovirus reveal co-infection with field variants and emergence of a recent recombinant strain publication-title: PloS One contributor: fullname: Panzera – volume: 38 start-page: 815 year: 2008 end-page: 825 ident: bib30 article-title: Canine respiratory coronavirus: an emerging pathogen in the canine infectious respiratory disease complex publication-title: Vet. Clin. North Am. - Small Anim. Pract. contributor: fullname: Brownlie – volume: 202 start-page: 659 year: 2014 end-page: 662 ident: bib21 article-title: Characterization of pantropic canine coronavirus from Brazil publication-title: Vet. J. contributor: fullname: Canal – volume: 430 start-page: 90 year: 2012 end-page: 99 ident: bib22 article-title: Characterization of a recombinant canine coronavirus with a distinct receptor-binding (S1) domain publication-title: Virology contributor: fullname: Whittaker – volume: 90 start-page: 205 year: 2011 end-page: 207 ident: bib23 article-title: Detection and genotyping of canine coronavirus RNA in diarrheic dogs in Japan publication-title: Res. Vet. Sci. contributor: fullname: Hara – volume: 9 year: 2014 ident: bib24 article-title: Emergence of pathogenic coronaviruses in cats by homologous recombination between feline and canine coronaviruses publication-title: PloS One contributor: fullname: Maeda – volume: 83 start-page: 1532 year: 2009 end-page: 1537 ident: bib7 article-title: Recombinant canine coronaviruses related to transmissible gastroenteritis virus of swine are circulating in dogs publication-title: J. Virol. contributor: fullname: Buonavoglia – volume: 16 start-page: 129 year: 2013 end-page: 136 ident: bib19 article-title: Canine coronavirus, Greece. Molecular analysis and genetic diversity characterization publication-title: Infect. Genet. Evol. contributor: fullname: Xylouri – volume: 1 start-page: 4 year: 2018 end-page: 8 ident: bib1 article-title: Identification of enteric viruses circulating in a dog population with low vaccine coverage publication-title: Braz. J. Microbiol. contributor: fullname: Canal – volume: 168 start-page: 8 year: 2014 end-page: 15 ident: bib3 article-title: Molecular characterization of canine coronavirus strains circulating in Brazil publication-title: Vet. Microbiol. contributor: fullname: de Nasser Cubel Garcia – volume: 240 start-page: 154 year: 2017 end-page: 160 ident: bib18 article-title: Molecular characterization of canine parvovirus and canine enteric coronavirus in diarrheic dogs on the island of St. Kitts: first report from the Caribbean region publication-title: Virus Res. contributor: fullname: Ghosh – volume: 16 start-page: 41 year: 2010 end-page: 47 ident: bib8 article-title: Recombinant canine coronaviruses in dogs publication-title: Europe. Emerg. Inf. Disp. contributor: fullname: Buonavoglia – volume: 5 start-page: 1 year: 2018 end-page: 6 ident: bib4 article-title: Canine coronavirus (CCoV), a neglected pathogen: molecular diversity of S, M, N and 3b genes publication-title: Host Viruses contributor: fullname: Silva – volume: 517 start-page: 108 year: 2018 end-page: 121 ident: bib14 article-title: Feline coronavirus: insights into viral pathogenesis based on the spike protein structure and function publication-title: Virology contributor: fullname: Whittaker – volume: 71 start-page: 291 year: 1999 end-page: 305 ident: bib27 article-title: Quantitive real-time PCR for the measurement of feline cytokine mRNA publication-title: Vet. Immunol. Immunopathol contributor: fullname: Lutz – volume: 51 start-page: 83 year: 2013 end-page: 88 ident: bib6 article-title: European surveillance for pantropic canine coronavirus publication-title: J. Clin. Microbiol. contributor: fullname: Buonavoglia – volume: 124 start-page: 78 year: 2007 end-page: 87 ident: bib12 article-title: Isolation and sequence analysis of canine respiratory coronavirus publication-title: Virus Res. contributor: fullname: Brownlie – volume: 11 start-page: 1 year: 2016 end-page: 11 ident: bib25 article-title: Co-circulation of canine coronavirus I and IIa/b with high prevalence and genetic diversity in Heilongjiang Province, Northeast China publication-title: PloS One contributor: fullname: Sun – volume: 33 start-page: 1870 year: 2016 end-page: 1874 ident: bib15 article-title: MEGA7: molecular evolutionary Genetics analysis version 7.0 for bigger datasets publication-title: Mol. Biol. Evol. contributor: fullname: Tamura – volume: 164 start-page: 213 year: 2009 end-page: 216 ident: bib11 article-title: Feline parvovirus infection in an Asian palm civet (Paradoxurus hermaphroditus) publication-title: Vet. Rec. contributor: fullname: Rusvai – volume: 42 start-page: 1797 year: 2004 end-page: 1799 ident: bib29 article-title: Two genotypes of canine coronavirus simultaneously detected in the fecal samples of dogs with diarrhea publication-title: J. Clinic. Microbiol. contributor: fullname: Buonavoglia – volume: 15 start-page: 536 year: 1993 end-page: 537 ident: bib2 article-title: A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples publication-title: Biotechniques contributor: fullname: Chomczynski – volume: 1 start-page: 1 year: 2015 end-page: 5 ident: bib17 article-title: RDP4: detection and analysis of recombination patterns in virus genomes publication-title: Virus Evol. contributor: fullname: Golden – volume: 152 start-page: 41 year: 2007 end-page: 58 ident: bib13 article-title: SYBR Green real-time reverse transcription-polymerase chain reaction assay for the generic detection of coronaviruses publication-title: Arch. Virol. contributor: fullname: Blomberg – volume: 1 start-page: 1 year: 2015 ident: 10.1016/j.heliyon.2020.e04381_bib17 article-title: RDP4: detection and analysis of recombination patterns in virus genomes publication-title: Virus Evol. contributor: fullname: Muhire – volume: 9 year: 2014 ident: 10.1016/j.heliyon.2020.e04381_bib20 article-title: Phylogenetic and genome-wide deep-sequencing analyses of canine parvovirus reveal co-infection with field variants and emergence of a recent recombinant strain publication-title: PloS One doi: 10.1371/journal.pone.0111779 contributor: fullname: Pérez – volume: 53 start-page: 297 year: 2012 ident: 10.1016/j.heliyon.2020.e04381_bib26 article-title: Fatal outbreaks in dogs associated with pantropic canine coronavirus in France and Belgium publication-title: J. Small Anim. Pract. doi: 10.1111/j.1748-5827.2011.01178.x contributor: fullname: Zicola – volume: 9 year: 2014 ident: 10.1016/j.heliyon.2020.e04381_bib24 article-title: Emergence of pathogenic coronaviruses in cats by homologous recombination between feline and canine coronaviruses publication-title: PloS One doi: 10.1371/journal.pone.0106534 contributor: fullname: Terada – volume: 80 start-page: 11 year: 1999 ident: 10.1016/j.heliyon.2020.e04381_bib28 article-title: Development of a nested PCR assay for the detection of canine coronavirus publication-title: J. Virol. Method. doi: 10.1016/S0166-0934(99)00017-8 contributor: fullname: Pratelli – volume: 168 start-page: 8 year: 2014 ident: 10.1016/j.heliyon.2020.e04381_bib3 article-title: Molecular characterization of canine coronavirus strains circulating in Brazil publication-title: Vet. Microbiol. doi: 10.1016/j.vetmic.2013.10.002 contributor: fullname: Costa – volume: 38 start-page: 815 year: 2008 ident: 10.1016/j.heliyon.2020.e04381_bib30 article-title: Canine respiratory coronavirus: an emerging pathogen in the canine infectious respiratory disease complex publication-title: Vet. Clin. North Am. - Small Anim. Pract. doi: 10.1016/j.cvsm.2008.02.008 contributor: fullname: Erles – volume: 6 start-page: 3363 year: 2014 ident: 10.1016/j.heliyon.2020.e04381_bib16 article-title: Canine enteric coronaviruses: emerging viral pathogens with distinct recombinant spike proteins publication-title: Viruses doi: 10.3390/v6083363 contributor: fullname: Licitra – volume: 1 start-page: 4 year: 2018 ident: 10.1016/j.heliyon.2020.e04381_bib1 article-title: Identification of enteric viruses circulating in a dog population with low vaccine coverage publication-title: Braz. J. Microbiol. contributor: fullname: Alves – volume: 152 start-page: 41 year: 2007 ident: 10.1016/j.heliyon.2020.e04381_bib13 article-title: SYBR Green real-time reverse transcription-polymerase chain reaction assay for the generic detection of coronaviruses publication-title: Arch. Virol. doi: 10.1007/s00705-006-0840-x contributor: fullname: Escutenaire – volume: 90 start-page: 205 year: 2011 ident: 10.1016/j.heliyon.2020.e04381_bib23 article-title: Detection and genotyping of canine coronavirus RNA in diarrheic dogs in Japan publication-title: Res. Vet. Sci. doi: 10.1016/j.rvsc.2010.05.027 contributor: fullname: Soma – volume: 16 start-page: 41 year: 2010 ident: 10.1016/j.heliyon.2020.e04381_bib8 article-title: Recombinant canine coronaviruses in dogs publication-title: Europe. Emerg. Inf. Disp. doi: 10.3201/eid1601.090726 contributor: fullname: Decaro – volume: 164 start-page: 213 year: 2009 ident: 10.1016/j.heliyon.2020.e04381_bib11 article-title: Feline parvovirus infection in an Asian palm civet (Paradoxurus hermaphroditus) publication-title: Vet. Rec. doi: 10.1136/vr.164.7.213 contributor: fullname: Demeter – volume: 124 start-page: 78 year: 2007 ident: 10.1016/j.heliyon.2020.e04381_bib12 article-title: Isolation and sequence analysis of canine respiratory coronavirus publication-title: Virus Res. doi: 10.1016/j.virusres.2006.10.004 contributor: fullname: Erles – volume: 202 start-page: 659 year: 2014 ident: 10.1016/j.heliyon.2020.e04381_bib21 article-title: Characterization of pantropic canine coronavirus from Brazil publication-title: Vet. J. doi: 10.1016/j.tvjl.2014.09.006 contributor: fullname: Pinto – volume: 42 start-page: 1797 issue: 4 year: 2004 ident: 10.1016/j.heliyon.2020.e04381_bib29 article-title: Two genotypes of canine coronavirus simultaneously detected in the fecal samples of dogs with diarrhea publication-title: J. Clinic. Microbiol. doi: 10.1128/JCM.42.4.1797-1799.2004 contributor: fullname: Pratelli – volume: 210 start-page: 100 year: 2015 ident: 10.1016/j.heliyon.2020.e04381_bib9 article-title: Full-length genome analysis of canine coronavirus type I publication-title: Virus Res. doi: 10.1016/j.virusres.2015.07.018 contributor: fullname: Decaro – volume: 125 start-page: 54 year: 2007 ident: 10.1016/j.heliyon.2020.e04381_bib10 article-title: Molecular characterisation of the virulent canine coronavirus CB/05 strain publication-title: Virus Res. doi: 10.1016/j.virusres.2006.12.006 contributor: fullname: Decaro – volume: 33 start-page: 1870 year: 2016 ident: 10.1016/j.heliyon.2020.e04381_bib15 article-title: MEGA7: molecular evolutionary Genetics analysis version 7.0 for bigger datasets publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/msw054 contributor: fullname: Kumar – volume: 71 start-page: 291 year: 1999 ident: 10.1016/j.heliyon.2020.e04381_bib27 article-title: Quantitive real-time PCR for the measurement of feline cytokine mRNA publication-title: Vet. Immunol. Immunopathol doi: 10.1016/S0165-2427(99)00100-2 contributor: fullname: Leutenegger – volume: 51 start-page: 83 year: 2013 ident: 10.1016/j.heliyon.2020.e04381_bib6 article-title: European surveillance for pantropic canine coronavirus publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.02466-12 contributor: fullname: Decaro – volume: 83 start-page: 1532 year: 2009 ident: 10.1016/j.heliyon.2020.e04381_bib7 article-title: Recombinant canine coronaviruses related to transmissible gastroenteritis virus of swine are circulating in dogs publication-title: J. Virol. doi: 10.1128/JVI.01937-08 contributor: fullname: Decaro – volume: 517 start-page: 108 year: 2018 ident: 10.1016/j.heliyon.2020.e04381_bib14 article-title: Feline coronavirus: insights into viral pathogenesis based on the spike protein structure and function publication-title: Virology doi: 10.1016/j.virol.2017.12.027 contributor: fullname: Jaimes – volume: 430 start-page: 90 year: 2012 ident: 10.1016/j.heliyon.2020.e04381_bib22 article-title: Characterization of a recombinant canine coronavirus with a distinct receptor-binding (S1) domain publication-title: Virology doi: 10.1016/j.virol.2012.04.013 contributor: fullname: Regan – volume: 11 start-page: 1 year: 2016 ident: 10.1016/j.heliyon.2020.e04381_bib25 article-title: Co-circulation of canine coronavirus I and IIa/b with high prevalence and genetic diversity in Heilongjiang Province, Northeast China publication-title: PloS One contributor: fullname: Wang – volume: 15 start-page: 536 issue: 532–4 year: 1993 ident: 10.1016/j.heliyon.2020.e04381_bib2 article-title: A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples publication-title: Biotechniques contributor: fullname: Chomczynski – volume: 240 start-page: 154 year: 2017 ident: 10.1016/j.heliyon.2020.e04381_bib18 article-title: Molecular characterization of canine parvovirus and canine enteric coronavirus in diarrheic dogs on the island of St. Kitts: first report from the Caribbean region publication-title: Virus Res. doi: 10.1016/j.virusres.2017.08.008 contributor: fullname: Navarro – volume: 41 start-page: 1121 year: 2011 ident: 10.1016/j.heliyon.2020.e04381_bib5 article-title: Canine coronavirus: not only an enteric pathogen publication-title: Vet. Clin. North Am. Small Anim. Pract. doi: 10.1016/j.cvsm.2011.07.005 contributor: fullname: Decaro – volume: 16 start-page: 129 year: 2013 ident: 10.1016/j.heliyon.2020.e04381_bib19 article-title: Canine coronavirus, Greece. Molecular analysis and genetic diversity characterization publication-title: Infect. Genet. Evol. doi: 10.1016/j.meegid.2013.01.014 contributor: fullname: Ntafis – volume: 5 start-page: 1 year: 2018 ident: 10.1016/j.heliyon.2020.e04381_bib4 article-title: Canine coronavirus (CCoV), a neglected pathogen: molecular diversity of S, M, N and 3b genes publication-title: Host Viruses contributor: fullname: De Barros |
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| SubjectTerms | Alphacoronavirus 1 Biocomputational method Cats Colombia Coronavirus Dogs Epidemiology Genetics Microbiology Phylogenetic relationship Phylogeny Viral disease Viral genetics Virology |
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| Title | Molecular diversity of Alphacoronavirus 1 in dogs and cats in Colombia |
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