Identification and ranking of genetic and laboratory environment factors influencing a behavioral trait, thermal nociception, via computational analysis of a large data archive
Laboratory conditions in biobehavioral experiments are commonly assumed to be ‘controlled’, having little impact on the outcome. However, recent studies have illustrated that the laboratory environment has a robust effect on behavioral traits. Given that environmental factors can interact with trait...
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| Published in: | Neuroscience and Biobehavioral Reviews Vol. 26; no. 8; pp. 907 - 923 |
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| Main Authors: | , , , , |
| Format: | Book Review Journal Article |
| Language: | English |
| Published: |
Oxford
Elsevier Ltd
01-12-2002
Elsevier |
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| Abstract | Laboratory conditions in biobehavioral experiments are commonly assumed to be ‘controlled’, having little impact on the outcome. However, recent studies have illustrated that the laboratory environment has a robust effect on behavioral traits. Given that environmental factors can interact with trait-relevant genes, some have questioned the reliability and generalizability of behavior genetic research designed to identify those genes. This problem might be alleviated by the identification of the most relevant environmental factors, but the task is hindered by the large number of factors that typically vary between and within laboratories. We used a computational approach to retrospectively identify and rank sources of variability in nociceptive responses as they occurred in a typical research laboratory over several years. A machine-learning algorithm was applied to an archival data set of 8034 independent observations of baseline thermal nociceptive sensitivity. This analysis revealed that a factor even more important than mouse genotype was the experimenter performing the test, and that nociception can be affected by many additional laboratory factors including season/humidity, cage density, time of day, sex and within-cage order of testing. The results were confirmed by linear modeling in a subset of the data, and in confirmatory experiments, in which we were able to partition the variance of this complex trait among genetic (27%), environmental (42%) and genetic×environmental (18%) sources. |
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| AbstractList | Laboratory conditions in biobehavioral experiments are commonly assumed to be 'controlled', having little impact on the outcome. However, recent studies have illustrated that the laboratory environment has a robust effect on behavioral traits. Given that environmental factors can interact with trait-relevant genes, some have questioned the reliability and generalizability of behavior genetic research designed to identify those genes. This problem might be alleviated by the identification of the most relevant environmental factors, but the task is hindered by the large number of factors that typically vary between and within laboratories. We used a computational approach to retrospectively identify and rank sources of variability in nociceptive responses as they occurred in a typical research laboratory over several years. A machine-learning algorithm was applied to an archival data set of 8034 independent observations of baseline thermal nociceptive sensitivity. This analysis revealed that a factor even more important than mouse genotype was the experimenter performing the test, and that nociception can be affected by many additional laboratory factors including season/humidity, cage density, time of day, sex and within-cage order of testing. The results were confirmed by linear modeling in a subset of the data, and in confirmatory experiments, in which we were able to partition the variance of this complex trait among genetic (27%), environmental (42%) and genetic x environmental (18%) sources. Laboratory conditions in biobehavioral experiments are commonly assumed to be ‘controlled’, having little impact on the outcome. However, recent studies have illustrated that the laboratory environment has a robust effect on behavioral traits. Given that environmental factors can interact with trait-relevant genes, some have questioned the reliability and generalizability of behavior genetic research designed to identify those genes. This problem might be alleviated by the identification of the most relevant environmental factors, but the task is hindered by the large number of factors that typically vary between and within laboratories. We used a computational approach to retrospectively identify and rank sources of variability in nociceptive responses as they occurred in a typical research laboratory over several years. A machine-learning algorithm was applied to an archival data set of 8034 independent observations of baseline thermal nociceptive sensitivity. This analysis revealed that a factor even more important than mouse genotype was the experimenter performing the test, and that nociception can be affected by many additional laboratory factors including season/humidity, cage density, time of day, sex and within-cage order of testing. The results were confirmed by linear modeling in a subset of the data, and in confirmatory experiments, in which we were able to partition the variance of this complex trait among genetic (27%), environmental (42%) and genetic×environmental (18%) sources. |
| Author | Rodriguez-Zas, Sandra L Mogil, Jeffrey S Lariviere, William R Wilson, Sonya G Chesler, Elissa J |
| Author_xml | – sequence: 1 givenname: Elissa J surname: Chesler fullname: Chesler, Elissa J organization: Department of Psychology, University of Illinois at Urbana-Champaign, Champaign, IL 61820, USA – sequence: 2 givenname: Sonya G surname: Wilson fullname: Wilson, Sonya G organization: Department of Psychology, University of Illinois at Urbana-Champaign, Champaign, IL 61820, USA – sequence: 3 givenname: William R surname: Lariviere fullname: Lariviere, William R organization: Department of Psychology, University of Illinois at Urbana-Champaign, Champaign, IL 61820, USA – sequence: 4 givenname: Sandra L surname: Rodriguez-Zas fullname: Rodriguez-Zas, Sandra L organization: Department of Animal Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA – sequence: 5 givenname: Jeffrey S surname: Mogil fullname: Mogil, Jeffrey S email: jeffrey.mogil@mcgill.ca organization: Department of Psychology, University of Illinois at Urbana-Champaign, Champaign, IL 61820, USA |
| BackLink | http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=14631370$$DView record in Pascal Francis https://www.ncbi.nlm.nih.gov/pubmed/12667496$$D View this record in MEDLINE/PubMed |
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| Issue | 8 |
| Keywords | Nociception Pain Genetic Environment Mice Data mining CART Noxious stimulus Methodology Rodentia Thermal stimulus Environmental factor Review Genetic determinism Ambient humidity Strain Vertebrata Mammalia Investigation method Mouse Animal Sexual dimorphism Comparative study |
| Language | English |
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| PublicationTitle | Neuroscience and Biobehavioral Reviews |
| PublicationTitleAlternate | Neurosci Biobehav Rev |
| PublicationYear | 2002 |
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| Snippet | Laboratory conditions in biobehavioral experiments are commonly assumed to be ‘controlled’, having little impact on the outcome. However, recent studies have... Laboratory conditions in biobehavioral experiments are commonly assumed to be 'controlled', having little impact on the outcome. However, recent studies have... |
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| SubjectTerms | Animals Archives Automatic Data Processing Behavior - physiology Biological and medical sciences CART Computational Biology Data mining Environment Female Fundamental and applied biological sciences. Psychology Genetic Genetics Genotype Laboratories Male Mice Mice, Inbred Strains Models, Genetic Nociception Pain Pain Measurement Perception Proprioception. Interoception. Pain perception Psychology. Psychoanalysis. Psychiatry Psychology. Psychophysiology Quantitative Trait, Heritable Seasons Species Specificity |
| Title | Identification and ranking of genetic and laboratory environment factors influencing a behavioral trait, thermal nociception, via computational analysis of a large data archive |
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