Functional significance of four successive glycine residues in the pyrophosphate binding loop of fungal 6‐oxopurine phosphoribosyltransferases

• Published in: Protein science Vol. 21; no. 8; pp. 1185 - 1196
• Main Authors: Moynié, Lucile, Giraud, Marie‐France, Breton, Annick, Boissier, Fanny, Daignan‐Fornier, Bertrand, Dautant, Alain
• Format: Journal Article
• Language: English
• Published: Hoboken Wiley Subscription Services, Inc., A Wiley Company 01-08-2012; Wiley Subscription Services, Inc; Wiley
• Subjects: Binding Sites; Catalytic Domain; Cellular Biology; cis/trans isomerization; Crystal structure; Crystallography, X-Ray; Enzymes; Glycine - chemistry; Glycine - metabolism; glycine residue; Guanosine Monophosphate - metabolism; HGPRT; Hypoxanthine Phosphoribosyltransferase - chemistry; Hypoxanthine Phosphoribosyltransferase - metabolism; Life Sciences; Models, Molecular; peptide flipping; Peptides; phosphoribosyltransferase; Protein Conformation; Protein Multimerization; Purinones - metabolism; Saccharomyces cerevisiae; Saccharomyces cerevisiae - chemistry; Saccharomyces cerevisiae - enzymology; Saccharomyces cerevisiae - metabolism
• ISSN: 0961-8368; 1469-896X; 1469-896X
• DOI: 10.1002/pro.2098

Hypoxanthine‐guanine phosphoribosyltransferase (HGPRT) is a key enzyme of the purine recycling pathway that catalyzes the conversion of 5‐phospho‐ribosyl‐α‐1‐pyrophosphate and guanine or hypoxanthine to guanosine monophosphate (GMP) or inosine monophosphate (IMP), respectively, and pyrophosphate (PPi). We report the first crystal structure of a fungal 6‐oxopurine phosphoribosyltransferase, the Saccharomyces cerevisiae HGPRT (Sc‐HGPRT) in complex with GMP. The crystal structures of full length protein with (WT1) or without (WT2) sulfate that mimics the phosphate group in the PPi binding site were solved by molecular replacement using the structure of a truncated version (Δ7) solved beforehand by multiwavelength anomalous diffusion. Sc‐HGPRT is a dimer and adopts the overall structure of class I phosphoribosyltransferases (PRTs) with a smaller hood domain and a short two‐stranded parallel β‐sheet linking the N‐ to the C‐terminal end. The catalytic loops in WT1 and WT2 are in an open form while in Δ7, due to an inter‐subunit disulfide bridge, the catalytic loop is in either an open or closed form. The closure is concomitant with a peptide plane flipping in the PPi binding loop. Moreover, owing the flexibility of a GGGG motif conserved in fungi, all the peptide bonds of the phosphate binding loop are in trans conformation whereas in nonfungal 6‐oxopurine PRTs, one cis‐peptide bond is required for phosphate binding. Mutations affecting the enzyme activity or the previously characterized feedback inhibition by GMP are located at the nucleotide binding site and the dimer interface.
PDB Code(s): 2jkz, 2xbu, 2jky