The role of microarray technologies in the study of soft tissue tumours

Array technologies (gene array, tissue microarray and others) are being used in a growing number of research projects involving soft tissue tumours. Gene array techniques allow for measurements of RNA expression levels or gene copy number changes for a large number of genes in a single specimen. A c...

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Published in:Histopathology Vol. 48; no. 1; pp. 22 - 31
Main Authors: West, R B, Van De Rijn, M
Format: Journal Article
Language:English
Published: Oxford, UK Blackwell Science Ltd 01-01-2006
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Abstract Array technologies (gene array, tissue microarray and others) are being used in a growing number of research projects involving soft tissue tumours. Gene array techniques allow for measurements of RNA expression levels or gene copy number changes for a large number of genes in a single specimen. A complementary technique, tissue microarrays, allows for the measurement of expression of a single gene in a large number of specimens. These techniques and similar ones have created a fundamentally new approach to the investigation of soft tissue tumours. This review addresses some of the advantages, problems, and solutions to those problems that come with these technologies.
AbstractList Array technologies (gene array, tissue microarray and others) are being used in a growing number of research projects involving soft tissue tumours. Gene array techniques allow for measurements of RNA expression levels or gene copy number changes for a large number of genes in a single specimen. A complementary technique, tissue microarrays, allows for the measurement of expression of a single gene in a large number of specimens. These techniques and similar ones have created a fundamentally new approach to the investigation of soft tissue tumours. This review addresses some of the advantages, problems, and solutions to those problems that come with these technologies.
Author West, R B
Van De Rijn, M
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Cites_doi 10.1038/nm0798-844
10.1073/pnas.162471999
10.1038/12640
10.1016/S0002-9440(10)64430-6
10.1016/S0140-6736(02)08270-3
10.1016/S0002-9440(10)64437-9
10.1158/0008-5472.CAN-04-2857
10.1371/journal.pbio.0020007
10.1200/JCO.2003.04.190
10.1016/S0002-9440(10)63696-6
10.1038/nm791
10.1016/S0140-6736(05)66539-7
10.1158/1078-0432.CCR-04-0630
10.1002/gcc.20018
10.1158/0008-5472.CAN-04-1241
10.1126/science.286.5439.531
10.1073/pnas.0409462102
10.1038/sj.onc.1208780
10.1200/JCO.2004.05.140
10.1111/j.1750-3639.2004.tb00067.x
10.1038/sj.bjc.6600766
10.1126/science.306.5696.630
10.1016/S0046-8177(03)00407-6
10.1038/sj.onc.1208056
10.1097/00129039-200503000-00013
10.1073/pnas.162488599
10.1002/cncr.11586
10.1038/ng1201-365
10.1097/01.pas.0000126857.86186.4c
10.1016/S0022-2143(03)00007-6
10.1016/S0002-9440(10)63502-X
10.1016/S0002-9440(10)63593-6
10.1038/nmeth772
10.1093/nar/gki006
10.1158/1078-0432.CCR-03-0715
10.1371/journal.pbio.0030187
10.1016/S0002-9440(10)63279-8
10.1038/nmeth0505-329
10.1016/S0046-8177(03)00014-5
10.1158/0008-5472.CAN-04-2463
10.1158/0008-5472.CAN-04-1673
10.1097/00019606-200403000-00004
10.1097/01.MP.0000097365.72526.3E
10.1097/00000478-200007000-00014
10.1073/pnas.0402932101
10.1158/0008-5472.CAN-04-0559
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Issue 1
Keywords Anatomic pathology
Gene
Sarcoma
gene array
soft tissue tumours
Technology
Tissue microarrays
tissue microarray
Genetics
Soft tissue
Malignant tumor
sarcomas
Language English
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References Skubitz KM, Skubitz AP. Differential gene expression in uterine leiomyoma. J. Lab. Clin. Med. 2003; 141; 297-308.
Ren B, Yu YP, Jing L et al. Gene expression analysis of human soft tissue leiomyosarcomas. Hum. Pathol. 2003; 34; 549-558.
Lasota J, Dansonka-Mieszkowska A, Stachura T et al. Gastrointestinal stromal tumors with internal tandem duplications in 3′ end of KIT juxtamembrane domain occur predominantly in stomach and generally seem to have a favorable course. Mod. Pathol. 2003; 16; 1257-1264.
Corless CL, Fletcher JA, Heinrich MC. Biology of gastrointestinal stromal tumors. J. Clin. Oncol. 2004; 22; 3813-3825.
Golub TR, Slonim DK, Tamayo P et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999; 286 (5439); 531-537.
Van De Rijn M, Rubin BP. Gene expression studies on soft tissue tumors. Am. J. Pathol. 2002; 161; 1531-1534.
Blay P, Astudillo A, Buesa JM et al. Protein kinase C theta is highly expressed in gastrointestinal stromal tumors but not in other mesenchymal neoplasias. Clin. Cancer Res. 2004; 10 (12 Part 1); 4089-4095.
Kononen J, Bubendorf L, Kallioniemi A et al. Tissue microarrays for high-throughput molecular profiling of tumor specimens. Nat. Med. 1998; 4; 844-847.
Montgomery K, Zhao S, Van De Rijn M, Natkunam Y. A novel method for making 'tissue' microarrays from small numbers of suspension cells. Appl. Immunohistochem. Mol. Morph. 2005; 13; 80-84.
West RB, Corless CL, Chen X et al. The novel marker, DOG1, is expressed ubiquitously in gastrointestinal stromal tumors irrespective of KIT or PDGFRA mutation status. Am. J. Pathol. 2004; 165; 107-113.
Allander SV, Illei PB, Chen Y et al. Expression profiling of synovial sarcoma by cDNA microarrays: association of ERBB2, IGFBP2, and ELF3 with epithelial differentiation. Am. J. Pathol. 2002; 161; 1587-1595.
Linn SC, West RB, Pollack JR et al. Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans. Am. J. Pathol. 2003; 163; 2383-2395.
Subramanian S, West RB, Corless CL et al. Gastrointestinal stromal tumors (GISTs) with KIT and PDGFRA mutations have distinct gene expression profiles. Oncogene 2004; 23; 7780-7790.
Marshall E. Getting the noise out of gene arrays. Science 2004; 306 (5696); 630-631.
Camp RL, Chung GG, Rimm DL. Automated subcellular localization and quantification of protein expression in tissue microarrays. Nat. Med. 2002; 8; 1323-1327.
Hu-Lieskovan S, Zhang J, Wu L et al. EWS-FLI1 fusion protein up-regulates critical genes in neural crest development and is responsible for the observed phenotype of Ewing's family of tumors. Cancer Res. 2005; 65; 4633-4644.
Chang HY, Chi JT, Dudoit S et al. Diversity, topographic differentiation, and positional memory in human fibroblasts. Proc. Natl Acad. Sci. USA 2002; 99; 12877-12882.
Werner M, Chott A, Fabiano A, Battifora H. Effect of formalin tissue fixation and processing on immunohistochemistry. Am. J. Surg. Pathol. 2000; 24; 1016-1019.
Lasota J, Kopczynski J, Sarlomo-Rikala M et al. KIT 1530ins6 mutation defines a subset of predominantly malignant gastrointestinal stromal tumors of intestinal origin. Hum. Pathol. 2003; 34; 1306-1312.
Segal NH, Pavlidis P, Antonescu CR et al. Classification and subtype prediction of adult soft tissue sarcoma by functional genomics. Am. J. Pathol. 2003; 163; 691-700.
Lee YF, John M, Edwards S et al. Molecular classification of synovial sarcomas, leiomyosarcomas and malignant fibrous histiocytomas by gene expression profiling. Br. J. Cancer 2003; 88; 510-515.
Brazma A, Hingamp P, Quackenbush J et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat. Genet. 2001; 29; 365-371.
Antonescu CR, Sommer G, Sarran L et al. Association of KIT exon 9 mutations with nongastric primary site and aggressive behavior: KIT mutation analysis and clinical correlates of 120 gastrointestinal stromal tumors. Clin. Cancer Res. 2003; 9; 3329-3337.
Heinrich MC, Corless CL, Demetri GD et al. Kinase mutations and imatinib response in patients with metastatic gastrointestinal stromal tumor. J. Clin. Oncol. 2003; 21; 4342-4349.
Michiels S, Koscielny S, Hill C. Prediction of cancer outcome with microarrays. Lancet 2005; 365 (9472); 1684-1685.
Antonescu CR, Viale A, Sarran L et al. Gene expression in gastrointestinal stromal tumors is distinguished by KIT genotype and anatomic site. Clin. Cancer Res. 2004; 10; 3282-3290.
Lee YF, John M, Falconer A et al. A gene expression signature associated with metastatic outcome in human leiomyosarcomas. Cancer Res. 2004; 64; 7201-7204.
Harvell JD, Kohler S, Zhu S et al. High-resolution array-based comparative genomic hybridization for distinguishing paraffin-embedded Spitz nevi and melanomas. Diagn. Mol. Pathol. 2004; 13; 22-25.
Ball CA, Awad IA, Demeter J et al. The Stanford Microarray Database accommodates additional microarray platforms and data formats. Nucleic Acids Res. 2005; 33 (Database issue); D580-582.
Aguirre AJ, Brennan C, Bailey G et al. High-resolution characterization of the pancreatic adenocarcinoma genome. Proc. Natl Acad. Sci. USA 2004; 101; 9067-9072.
Allander SV, Nupponen NN, Ringner M et al. Gastrointestinal stromal tumors with KIT mutations exhibit a remarkably homogeneous gene expression profile. Cancer Res. 2001; 61; 8624-8628.
Nagayama S, Katagiri T, Tsunoda T et al. Genome-wide analysis of gene expression in synovial sarcomas using a cDNA microarray. Cancer Res. 2002; 62; 5859-5866.
Lebaron MJ, Crismon HR, Utama FE et al. Ultrahigh density microarrays of solid samples. Nat. Meth. 2005; 2; 511-513.
Mintz MB, Sowers R, Brown KM et al. An expression signature classifies chemotherapy-resistant pediatric osteosarcoma. Cancer Res. 2005; 65; 1748-1754.
Sherlock G. Of fish and chips. Nat. Meth. 2005; 2; 329-330.
West RB, Harvell J, Linn SC et al. Apo D in soft tissue tumors: a novel marker for dermatofibrosarcoma protuberans. Am. J. Surg. Pathol. 2004; 28; 1063-1069.
Pollack JR, Perou CM, Alizadeh AA et al. Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat. Genet. 1999; 23; 41-46.
West RB, Nuyten DS, Subramanian S et al. Determination of stromal signatures in breast carcinoma. Plos. Biol. 2005; 3; e187.
Watson MA, Perry A, Tihan T et al. Gene expression profiling reveals unique molecular subtypes of neurofibromatosis type I-associated and sporadic malignant peripheral nerve sheath tumors. Brain Pathol. 2004; 14; 297-303.
Van De Rijn M, Fletcher JA. Genetics of Soft tissue tumors. Annu. Rev. Pathol. in press.
Brennan C, Zhang Y, Leo C et al. High-resolution global profiling of genomic alterations with long oligonucleotide microarray. Cancer Res. 2004; 64; 4744-4748.
Duensing A, Joseph NE, Medeiros F et al. Protein kinase C theta (PKCtheta) expression and constitutive activation in gastrointestinal stromal tumors (GISTs). Cancer Res. 2004; 64; 5127-5131.
Nielsen TO, West RB, Linn SC et al. Molecular characterisation of soft tissue tumours: a gene expression study. Lancet 2002; 359 (9314); 1301-1307.
Quade BJ, Wang TY, Sornberger K et al. Molecular pathogenesis of uterine smooth muscle tumors from transcriptional profiling. Genes Chromosomes Cancer 2004; 40; 97-108.
Nagayama S, Fukukawa C, Katagiri T et al. Therapeutic potential of antibodies against FZD10, a cell-surface protein, for synovial sarcomas. Oncogene 2005; 24; 6201-6212.
Chang HY, Nuyten DS, Sneddon JB et al. Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival. Proc. Natl Acad. Sci. USA 2005; 102; 3738-3743.
Skubitz KM, Skubitz AP. Differential gene expression in leiomyosarcoma. Cancer 2003; 98; 1029-1038.
Pollack JR, Sorlie T, Perou CM et al. Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc. Natl Acad. Sci. USA 2002; 99; 12963-12968.
Nielsen TO, Hsu FD, O'Connell JX et al. Tissue microarray validation of epidermal growth factor receptor and SALL2 in synovial sarcoma with comparison to tumors of similar histology. Am. J. Pathol. 2003; 163; 1449-1456.
Chang HY, Sneddon JB, Alizadeh AA et al. Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds. Plos. Biol. 2004; 2; E7.
2004; 101
2004; 22
2004; 165
2004; 64
2004; 40
in press
2004; 28
2000; 24
2004; 23
2002; 99
2002; 8
2002; 359
1999; 286
1999; 23
2003; 16
2005; 65
2004; 2
2001; 29
2004; 306
2003; 98
2005; 24
2003; 34
2004; 10
2001; 61
2002; 161
2005; 365
2002; 62
2005; 102
2004; 14
2003; 9
2004; 13
2005; 3
2005; 2
1998; 4
2005; 33
2003; 21
2003; 88
2005; 13
2003; 163
2003; 141
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References_xml – volume: 161
  start-page: 1531
  year: 2002
  end-page: 1534
  article-title: Gene expression studies on soft tissue tumors
  publication-title: Am. J. Pathol.
– volume: 62
  start-page: 5859
  year: 2002
  end-page: 5866
  article-title: Genome‐wide analysis of gene expression in synovial sarcomas using a cDNA microarray
  publication-title: Cancer Res.
– volume: 99
  start-page: 12963
  year: 2002
  end-page: 12968
  article-title: Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
  publication-title: Proc. Natl Acad. Sci. USA
– volume: 359
  start-page: 1301
  issue: 9314
  year: 2002
  end-page: 1307
  article-title: Molecular characterisation of soft tissue tumours: a gene expression study
  publication-title: Lancet
– volume: 64
  start-page: 5127
  year: 2004
  end-page: 5131
  article-title: Protein kinase C theta (PKCtheta) expression and constitutive activation in gastrointestinal stromal tumors (GISTs)
  publication-title: Cancer Res.
– volume: 23
  start-page: 41
  year: 1999
  end-page: 46
  article-title: Genome‐wide analysis of DNA copy‐number changes using cDNA microarrays
  publication-title: Nat. Genet.
– volume: 24
  start-page: 1016
  year: 2000
  end-page: 1019
  article-title: Effect of formalin tissue fixation and processing on immunohistochemistry
  publication-title: Am. J. Surg. Pathol.
– volume: 4
  start-page: 844
  year: 1998
  end-page: 847
  article-title: Tissue microarrays for high‐throughput molecular profiling of tumor specimens
  publication-title: Nat. Med.
– volume: 2
  start-page: E7
  year: 2004
  article-title: Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds
  publication-title: Plos. Biol.
– volume: 98
  start-page: 1029
  year: 2003
  end-page: 1038
  article-title: Differential gene expression in leiomyosarcoma
  publication-title: Cancer
– volume: 163
  start-page: 1449
  year: 2003
  end-page: 1456
  article-title: Tissue microarray validation of epidermal growth factor receptor and SALL2 in synovial sarcoma with comparison to tumors of similar histology
  publication-title: Am. J. Pathol.
– volume: 28
  start-page: 1063
  year: 2004
  end-page: 1069
  article-title: Apo D in soft tissue tumors: a novel marker for dermatofibrosarcoma protuberans
  publication-title: Am. J. Surg. Pathol.
– volume: 161
  start-page: 1587
  year: 2002
  end-page: 1595
  article-title: Expression profiling of synovial sarcoma by cDNA microarrays: association of ERBB2, IGFBP2, and ELF3 with epithelial differentiation
  publication-title: Am. J. Pathol.
– volume: 141
  start-page: 297
  year: 2003
  end-page: 308
  article-title: Differential gene expression in uterine leiomyoma
  publication-title: J. Lab. Clin. Med.
– volume: 165
  start-page: 107
  year: 2004
  end-page: 113
  article-title: The novel marker, DOG1, is expressed ubiquitously in gastrointestinal stromal tumors irrespective of KIT or PDGFRA mutation status
  publication-title: Am. J. Pathol.
– volume: 64
  start-page: 7201
  year: 2004
  end-page: 7204
  article-title: A gene expression signature associated with metastatic outcome in human leiomyosarcomas
  publication-title: Cancer Res.
– volume: 2
  start-page: 511
  year: 2005
  end-page: 513
  article-title: Ultrahigh density microarrays of solid samples
  publication-title: Nat. Meth.
– volume: 8
  start-page: 1323
  year: 2002
  end-page: 1327
  article-title: Automated subcellular localization and quantification of protein expression in tissue microarrays
  publication-title: Nat. Med.
– volume: 21
  start-page: 4342
  year: 2003
  end-page: 4349
  article-title: Kinase mutations and imatinib response in patients with metastatic gastrointestinal stromal tumor
  publication-title: J. Clin. Oncol.
– volume: 14
  start-page: 297
  year: 2004
  end-page: 303
  article-title: Gene expression profiling reveals unique molecular subtypes of neurofibromatosis type I‐associated and sporadic malignant peripheral nerve sheath tumors
  publication-title: Brain Pathol.
– volume: 101
  start-page: 9067
  year: 2004
  end-page: 9072
  article-title: High‐resolution characterization of the pancreatic adenocarcinoma genome
  publication-title: Proc. Natl Acad. Sci. USA
– volume: 286
  start-page: 531
  issue: 5439
  year: 1999
  end-page: 537
  article-title: Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
  publication-title: Science
– volume: 2
  start-page: 329
  year: 2005
  end-page: 330
  article-title: Of fish and chips
  publication-title: Nat. Meth
– volume: 65
  start-page: 1748
  year: 2005
  end-page: 1754
  article-title: An expression signature classifies chemotherapy‐resistant pediatric osteosarcoma
  publication-title: Cancer Res.
– volume: 306
  start-page: 630
  issue: 5696
  year: 2004
  end-page: 631
  article-title: Getting the noise out of gene arrays
  publication-title: Science
– volume: 365
  start-page: 1684
  issue: 9472
  year: 2005
  end-page: 1685
  article-title: Prediction of cancer outcome with microarrays
  publication-title: Lancet
– volume: 22
  start-page: 3813
  year: 2004
  end-page: 3825
  article-title: Biology of gastrointestinal stromal tumors
  publication-title: J. Clin. Oncol.
– volume: 3
  start-page: e187
  year: 2005
  article-title: Determination of stromal signatures in breast carcinoma
  publication-title: Plos. Biol.
– volume: 9
  start-page: 3329
  year: 2003
  end-page: 3337
  article-title: Association of KIT exon 9 mutations with nongastric primary site and aggressive behavior: KIT mutation analysis and clinical correlates of 120 gastrointestinal stromal tumors
  publication-title: Clin. Cancer Res.
– volume: 102
  start-page: 3738
  year: 2005
  end-page: 3743
  article-title: Robustness, scalability, and integration of a wound‐response gene expression signature in predicting breast cancer survival
  publication-title: Proc. Natl Acad. Sci. USA
– volume: 29
  start-page: 365
  year: 2001
  end-page: 371
  article-title: Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
  publication-title: Nat. Genet.
– volume: 64
  start-page: 4744
  year: 2004
  end-page: 4748
  article-title: High‐resolution global profiling of genomic alterations with long oligonucleotide microarray
  publication-title: Cancer Res.
– volume: 163
  start-page: 691
  year: 2003
  end-page: 700
  article-title: Classification and subtype prediction of adult soft tissue sarcoma by functional genomics
  publication-title: Am. J. Pathol.
– volume: 88
  start-page: 510
  year: 2003
  end-page: 515
  article-title: Molecular classification of synovial sarcomas, leiomyosarcomas and malignant fibrous histiocytomas by gene expression profiling
  publication-title: Br. J. Cancer
– volume: 34
  start-page: 549
  year: 2003
  end-page: 558
  article-title: Gene expression analysis of human soft tissue leiomyosarcomas
  publication-title: Hum. Pathol.
– volume: 13
  start-page: 22
  year: 2004
  end-page: 25
  article-title: High‐resolution array‐based comparative genomic hybridization for distinguishing paraffin‐embedded Spitz nevi and melanomas
  publication-title: Diagn. Mol. Pathol.
– volume: 10
  start-page: 3282
  year: 2004
  end-page: 3290
  article-title: Gene expression in gastrointestinal stromal tumors is distinguished by KIT genotype and anatomic site
  publication-title: Clin. Cancer Res.
– volume: 10
  start-page: 4089
  issue: 12 Part 1
  year: 2004
  end-page: 4095
  article-title: Protein kinase C theta is highly expressed in gastrointestinal stromal tumors but not in other mesenchymal neoplasias
  publication-title: Clin. Cancer Res.
– volume: 40
  start-page: 97
  year: 2004
  end-page: 108
  article-title: Molecular pathogenesis of uterine smooth muscle tumors from transcriptional profiling
  publication-title: Genes Chromosomes Cancer
– volume: 23
  start-page: 7780
  year: 2004
  end-page: 7790
  article-title: Gastrointestinal stromal tumors (GISTs) with KIT and PDGFRA mutations have distinct gene expression profiles
  publication-title: Oncogene
– volume: 65
  start-page: 4633
  year: 2005
  end-page: 4644
  article-title: EWS‐FLI1 fusion protein up‐regulates critical genes in neural crest development and is responsible for the observed phenotype of Ewing's family of tumors
  publication-title: Cancer Res.
– volume: 99
  start-page: 12877
  year: 2002
  end-page: 12882
  article-title: Diversity, topographic differentiation, and positional memory in human fibroblasts
  publication-title: Proc. Natl Acad. Sci. USA
– volume: 16
  start-page: 1257
  year: 2003
  end-page: 1264
  article-title: Gastrointestinal stromal tumors with internal tandem duplications in 3′ end of KIT juxtamembrane domain occur predominantly in stomach and generally seem to have a favorable course
  publication-title: Mod. Pathol.
– volume: 61
  start-page: 8624
  year: 2001
  end-page: 8628
  article-title: Gastrointestinal stromal tumors with KIT mutations exhibit a remarkably homogeneous gene expression profile
  publication-title: Cancer Res.
– volume: 34
  start-page: 1306
  year: 2003
  end-page: 1312
  article-title: KIT 1530ins6 mutation defines a subset of predominantly malignant gastrointestinal stromal tumors of intestinal origin
  publication-title: Hum. Pathol.
– volume: 33
  start-page: D580
  issue: Database issue
  year: 2005
  end-page: 582
  article-title: The Stanford Microarray Database accommodates additional microarray platforms and data formats
  publication-title: Nucleic Acids Res.
– year: in press
  article-title: Genetics of Soft tissue tumors
  publication-title: Annu. Rev. Pathol.
– volume: 163
  start-page: 2383
  year: 2003
  end-page: 2395
  article-title: Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans
  publication-title: Am. J. Pathol.
– volume: 13
  start-page: 80
  year: 2005
  end-page: 84
  article-title: A novel method for making ‘tissue’ microarrays from small numbers of suspension cells
  publication-title: Appl. Immunohistochem. Mol. Morph.
– volume: 24
  start-page: 6201
  year: 2005
  end-page: 6212
  article-title: Therapeutic potential of antibodies against FZD10, a cell‐surface protein, for synovial sarcomas
  publication-title: Oncogene
– ident: e_1_2_9_13_2
  doi: 10.1038/nm0798-844
– ident: e_1_2_9_40_2
  doi: 10.1073/pnas.162471999
– ident: e_1_2_9_39_2
  doi: 10.1038/12640
– ident: e_1_2_9_19_2
  doi: 10.1016/S0002-9440(10)64430-6
– ident: e_1_2_9_7_2
  doi: 10.1016/S0140-6736(02)08270-3
– ident: e_1_2_9_14_2
  doi: 10.1016/S0002-9440(10)64437-9
– ident: e_1_2_9_36_2
  doi: 10.1158/0008-5472.CAN-04-2857
– ident: e_1_2_9_49_2
  doi: 10.1371/journal.pbio.0020007
– volume: 61
  start-page: 8624
  year: 2001
  ident: e_1_2_9_6_2
  article-title: Gastrointestinal stromal tumors with KIT mutations exhibit a remarkably homogeneous gene expression profile
  publication-title: Cancer Res.
  contributor:
    fullname: Allander SV
– ident: e_1_2_9_32_2
  doi: 10.1200/JCO.2003.04.190
– ident: e_1_2_9_18_2
  article-title: Genetics of Soft tissue tumors
  publication-title: Annu. Rev. Pathol.
  contributor:
    fullname: Van De Rijn M
– ident: e_1_2_9_17_2
  doi: 10.1016/S0002-9440(10)63696-6
– ident: e_1_2_9_44_2
  doi: 10.1038/nm791
– ident: e_1_2_9_12_2
  doi: 10.1016/S0140-6736(05)66539-7
– ident: e_1_2_9_31_2
  doi: 10.1158/1078-0432.CCR-04-0630
– volume: 62
  start-page: 5859
  year: 2002
  ident: e_1_2_9_16_2
  article-title: Genome‐wide analysis of gene expression in synovial sarcomas using a cDNA microarray
  publication-title: Cancer Res.
  contributor:
    fullname: Nagayama S
– volume: 9
  start-page: 3329
  year: 2003
  ident: e_1_2_9_3_2
  article-title: Association of KIT exon 9 mutations with nongastric primary site and aggressive behavior: KIT mutation analysis and clinical correlates of 120 gastrointestinal stromal tumors
  publication-title: Clin. Cancer Res.
  contributor:
    fullname: Antonescu CR
– ident: e_1_2_9_22_2
  doi: 10.1002/gcc.20018
– ident: e_1_2_9_42_2
  doi: 10.1158/0008-5472.CAN-04-1241
– ident: e_1_2_9_38_2
  doi: 10.1126/science.286.5439.531
– ident: e_1_2_9_50_2
  doi: 10.1073/pnas.0409462102
– ident: e_1_2_9_34_2
  doi: 10.1038/sj.onc.1208780
– ident: e_1_2_9_2_2
  doi: 10.1200/JCO.2004.05.140
– ident: e_1_2_9_27_2
  doi: 10.1111/j.1750-3639.2004.tb00067.x
– ident: e_1_2_9_15_2
  doi: 10.1038/sj.bjc.6600766
– ident: e_1_2_9_11_2
  doi: 10.1126/science.306.5696.630
– ident: e_1_2_9_5_2
  doi: 10.1016/S0046-8177(03)00407-6
– ident: e_1_2_9_9_2
  doi: 10.1038/sj.onc.1208056
– ident: e_1_2_9_46_2
  doi: 10.1097/00129039-200503000-00013
– ident: e_1_2_9_48_2
  doi: 10.1073/pnas.162488599
– ident: e_1_2_9_24_2
  doi: 10.1002/cncr.11586
– ident: e_1_2_9_21_2
  doi: 10.1038/ng1201-365
– ident: e_1_2_9_28_2
  doi: 10.1097/01.pas.0000126857.86186.4c
– ident: e_1_2_9_25_2
  doi: 10.1016/S0022-2143(03)00007-6
– ident: e_1_2_9_33_2
  doi: 10.1016/S0002-9440(10)63502-X
– ident: e_1_2_9_37_2
  doi: 10.1016/S0002-9440(10)63593-6
– ident: e_1_2_9_51_2
  doi: 10.1038/nmeth772
– ident: e_1_2_9_20_2
  doi: 10.1093/nar/gki006
– ident: e_1_2_9_8_2
  doi: 10.1158/1078-0432.CCR-03-0715
– ident: e_1_2_9_47_2
  doi: 10.1371/journal.pbio.0030187
– ident: e_1_2_9_29_2
  doi: 10.1016/S0002-9440(10)63279-8
– ident: e_1_2_9_10_2
  doi: 10.1038/nmeth0505-329
– ident: e_1_2_9_26_2
  doi: 10.1016/S0046-8177(03)00014-5
– ident: e_1_2_9_35_2
  doi: 10.1158/0008-5472.CAN-04-2463
– ident: e_1_2_9_23_2
  doi: 10.1158/0008-5472.CAN-04-1673
– ident: e_1_2_9_43_2
  doi: 10.1097/00019606-200403000-00004
– ident: e_1_2_9_4_2
  doi: 10.1097/01.MP.0000097365.72526.3E
– ident: e_1_2_9_45_2
  doi: 10.1097/00000478-200007000-00014
– ident: e_1_2_9_41_2
  doi: 10.1073/pnas.0402932101
– ident: e_1_2_9_30_2
  doi: 10.1158/0008-5472.CAN-04-0559
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Snippet Array technologies (gene array, tissue microarray and others) are being used in a growing number of research projects involving soft tissue tumours. Gene array...
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StartPage 22
SubjectTerms Biological and medical sciences
Cluster Analysis
gene array
Gene Expression Profiling
Humans
Investigative techniques, diagnostic techniques (general aspects)
Medical sciences
Microarray Analysis - methods
Oligonucleotide Array Sequence Analysis - methods
Pathology. Cytology. Biochemistry. Spectrometry. Miscellaneous investigative techniques
sarcomas
Soft Tissue Neoplasms - diagnosis
Soft Tissue Neoplasms - genetics
soft tissue tumours
tissue microarray
Title The role of microarray technologies in the study of soft tissue tumours
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https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fj.1365-2559.2005.02286.x
https://www.ncbi.nlm.nih.gov/pubmed/16359534
https://search.proquest.com/docview/67579727
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