Squalene-hopene cyclase from Bradyrhizobium japonicum: cloning, expression, sequence analysis and comparison to other triterpenoid cyclases

• Published in: Microbiology (Society for General Microbiology) Vol. 143; no. 4; pp. 1235 - 1242
• Main Authors: Perzl, Michael, Muller, Peter, Poralla, Karl, Kannenberg, Elmar L
• Format: Journal Article
• Language: English
• Published: Reading Soc General Microbiol 01-04-1997; Society for General Microbiology
• Subjects: Amino Acid Sequence; Bacteriology; Base Sequence; Biological and medical sciences; Biology of microorganisms of confirmed or potential industrial interest; Biotechnology; Cloning, Molecular; Fundamental and applied biological sciences. Psychology; Genes, Bacterial; Genetics; Intramolecular Transferases; Isomerases - biosynthesis; Isomerases - genetics; Microbiology; Mission oriented research; Molecular Sequence Data; Recombinant Proteins - biosynthesis; Rhizobiaceae - enzymology; Rhizobiaceae - genetics; Sequence Analysis, DNA; Sequence Homology, Amino Acid; Squalene - metabolism; Triterpenes - metabolism; Terpenoid; Nucleotide sequence; Enzyme; Bradyrhizobium japonicum; Squalene; Lipids; Homology; Enzymatic activity; Cyclization; DNA; Triterpene; Bacteria; Rhizobiaceae; Aminoacid sequence
• ISSN: 1350-0872; 1465-2080
• DOI: 10.1099/00221287-143-4-1235

Mikrobiologie/Biotechnologie, Universität Tübingen, Auf der Morgenstelle 1, D-72076 Tubingen, Germany
Fachbereich Biologie-Botanik, Universität Marburg, Lahnberge, D-35043 Marburg, Germany
Complex Carbohydrate Research Center and Department of Biochemistry and Molecular Biology, University of Georgia, 220 Riverbend Road, Athens, GA 30602-4712, USA
Author for correspondence: Elmar L. Kannenberg. Tel: [phone] or [phone]. Fax: [phone] or + 1 706 542 4412. e-mail: poralla@:uni-tuebingen.de or elmark@:ccrc.uga.edu
ABSTRACT
With the help of a PCR-based screening method, the gene encoding squalene-hopene cyclase (SHC) of Bradyrhizobium japonicum USDA 110 was isolated from a cosmid library. The SHC catalyses the cyclization of squalene to hopanoids, a class of triterpenoid lipids recently discovered in nitrogen-fixing, root-nodule-forming Bradyrhizobium bacteria. Hybridization experiments showed that the gene is present in bacteria of all Bradyrhizobium strains tested and in photosynthetic bacteria forming stem nodules on tropical legumes of the genus Aeschynomene. The Bradyrhizobium shc gene is 1983 bp in length and encodes a protein of 660 amino acid residues with a calculated molecular mass of 73671 Da. Comparison of the deduced amino acid sequence with the sequences of other SHCs revealed highest similarity (70%) to the SHC from the Gram-negative Zymomonas mobilis and lower similarity (48%) to the SHCs from the Gram-positive Alicyclobacillus acidocaldarius and Alicyclobacillus acidoterrestris. Bradyrhizobium SHC also showed similarity (38-43%) to eukaryotic oxidosqualene cyclases. The B. japonicum shc gene was expressed in Escherichia coli. The recombinant SHC catalysed the cyclization of squalene to the hopanoids hopene and diplopterol in vitro. However, the formation of the gammacerane derivative tetrahymanol, which is produced in addition to hopanoids in B. japonicum strains in vivo, could not be detected in vitro. Therefore, the presence of a second squalene cyclase in B. japonicum can be assumed. Sequence analysis of 0.5 kb upstream from the shc gene identified a partial ORF with significant similarity to the C-terminus of an ORF located immediately upstream from the shc gene in Z. mobilis. Both ORFs also showed similarity to phytoene desaturases from cyanobacteria and plants. The 3'-end of this ORF from B. japonicum overlaps with 13 bp at the 5'-end of shc. The close proximity of this ORF to shc suggests that shc and this ORF may be part of an operon.
Keywords: Bradyrhizobium japonicum , triterpenoids, hopanoids, squalene-hopene cyclase