Mucosal Interactions between Genetics, Diet, and Microbiome in Inflammatory Bowel Disease
Numerous reviews have discussed gut microbiota composition changes during inflammatory bowel diseases (IBD), particularly Crohn's disease (CD). However, most studies address the observed effects by focusing on studying the univariate connection between disease and dietary-induced alterations to...
Saved in:
Published in: | Frontiers in immunology Vol. 7; p. 290 |
---|---|
Main Authors: | , , , |
Format: | Journal Article |
Language: | English |
Published: |
Switzerland
Frontiers Media S.A
02-08-2016
|
Subjects: | |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Abstract | Numerous reviews have discussed gut microbiota composition changes during inflammatory bowel diseases (IBD), particularly Crohn's disease (CD). However, most studies address the observed effects by focusing on studying the univariate connection between disease and dietary-induced alterations to gut microbiota composition. The possibility that these effects may reflect a number of other interconnected (i.e., pantropic) mechanisms, activated in parallel, particularly concerning various bacterial metabolites, is in the process of being elucidated. Progress seems, however, hampered by various difficult-to-study factors interacting at the mucosal level. Here, we highlight some of such factors that merit consideration, namely: (1) the contribution of host genetics and diet in altering gut microbiome, and in turn, the crosstalk among secondary metabolic pathways; (2) the interdependence between the amount of dietary fat, the fatty acid composition, the effects of timing and route of administration on gut microbiota community, and the impact of microbiota-derived fatty acids; (3) the effect of diet on bile acid composition, and the modulator role of bile acids on the gut microbiota; (4) the impact of endogenous and exogenous intestinal micronutrients and metabolites; and (5) the need to consider food associated toxins and chemicals, which can introduce confounding immune modulating elements (e.g., antioxidant and phytochemicals in oils and proteins). These concepts, which are not mutually exclusive, are herein illustrated paying special emphasis on physiologically inter-related processes. |
---|---|
AbstractList | Numerous reviews have discussed gut microbiota composition changes during inflammatory bowel diseases (IBD), particularly Crohn's disease (CD). However, most studies address the observed effects by focusing on studying the univariate connection between disease and dietary-induced alterations to gut microbiota composition. The possibility that these effects may reflect a number of other interconnected (i.e., pantropic) mechanisms, activated in parallel, particularly concerning various bacterial metabolites, is in the process of being elucidated. Progress seems, however, hampered by various difficult-to-study factors interacting at the mucosal level. Here, we highlight some of such factors that merit consideration, namely: (1) the contribution of host genetics and diet in altering gut microbiome, and in turn, the crosstalk among secondary metabolic pathways; (2) the interdependence between the amount of dietary fat, the fatty acid composition, the effects of timing and route of administration on gut microbiota community, and the impact of microbiota-derived fatty acids; (3) the effect of diet on bile acid composition, and the modulator role of bile acids on the gut microbiota; (4) the impact of endogenous and exogenous intestinal micronutrients and metabolites; and (5) the need to consider food associated toxins and chemicals, which can introduce confounding immune modulating elements (e.g., antioxidant and phytochemicals in oils and proteins). These concepts, which are not mutually exclusive, are herein illustrated paying special emphasis on physiologically inter-related processes. |
Author | Cominelli, Fabio Rodriguez-Palacios, Alex Trotter, Ashley Basson, Abigail |
AuthorAffiliation | 1 Digestive Health Research Institute, Case Western Reserve University , Cleveland, OH , USA 2 University Hospitals Case Medical Center , Cleveland, OH , USA |
AuthorAffiliation_xml | – name: 2 University Hospitals Case Medical Center , Cleveland, OH , USA – name: 1 Digestive Health Research Institute, Case Western Reserve University , Cleveland, OH , USA |
Author_xml | – sequence: 1 givenname: Abigail surname: Basson fullname: Basson, Abigail organization: Digestive Health Research Institute, Case Western Reserve University , Cleveland, OH , USA – sequence: 2 givenname: Ashley surname: Trotter fullname: Trotter, Ashley organization: Digestive Health Research Institute, Case Western Reserve University, Cleveland, OH, USA; University Hospitals Case Medical Center, Cleveland, OH, USA – sequence: 3 givenname: Alex surname: Rodriguez-Palacios fullname: Rodriguez-Palacios, Alex organization: Digestive Health Research Institute, Case Western Reserve University , Cleveland, OH , USA – sequence: 4 givenname: Fabio surname: Cominelli fullname: Cominelli, Fabio organization: Digestive Health Research Institute, Case Western Reserve University, Cleveland, OH, USA; University Hospitals Case Medical Center, Cleveland, OH, USA |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/27531998$$D View this record in MEDLINE/PubMed |
BookMark | eNpVkbtPwzAQxi0E4tmdCWVkaItfSZ0FCcpTArHAwGRdnDMYJTbEDhX_PSkFBLf4JN_3fWf_dsi6Dx4J2Wd0KoQqj6xr237KKSumlPKSrpFtVhRyIjiX63_6LTKK8YUOJUshRL5JtvgsF6ws1TZ5vO1NiNBk1z5hBya54GNWYVog-uwSPSZn4jg7c5jGGfg6u3WmC5ULLWbODzLbQNtCCt1HdhoW2AyjESHiHtmw0EQcfZ-75OHi_H5-Nbm5u7yen9xMjCx4mtSGc6EMEzO0UFlhQNYF1EaisAUtEfMKFNpZKSvIi1yBYKhMziqrhgdWSuyS45Xva1-1WBv0qYNGv3auhe5DB3D6_413z_opvGtZzqhQYjA4_DbowluPMenWRYNNAx5DHzVTjEvJmVpm0dXo8AUxdmh_YxjVSyj6C4peQtFfUAbJwd_1fgU_CMQn_ZCNFA |
CitedBy_id | crossref_primary_10_1021_acsptsci_2c00243 crossref_primary_10_3748_wjg_v25_i36_5543 crossref_primary_10_3390_ijms25021228 crossref_primary_10_1039_D0FO01724H crossref_primary_10_3390_microorganisms9081763 crossref_primary_10_1097_TXD_0000000000001033 crossref_primary_10_1093_ibd_izz242 crossref_primary_10_3390_nu11092246 crossref_primary_10_1016_j_clim_2020_108415 crossref_primary_10_1007_s10096_022_04435_2 crossref_primary_10_3389_fimmu_2019_00916 crossref_primary_10_1038_s41575_019_0157_3 crossref_primary_10_12688_f1000research_17267_1 crossref_primary_10_1016_j_cmet_2020_03_003 crossref_primary_10_1016_j_phanu_2019_100159 crossref_primary_10_1016_j_trsl_2020_05_008 crossref_primary_10_3389_fimmu_2016_00587 crossref_primary_10_3390_ijms18112360 crossref_primary_10_1155_2017_2439025 crossref_primary_10_3390_ijerph19063254 crossref_primary_10_3390_jcm9020547 crossref_primary_10_1002_imt2_124 crossref_primary_10_1073_pnas_2208160119 crossref_primary_10_1038_s41598_018_32583_z crossref_primary_10_1093_ibd_izz279 crossref_primary_10_3389_fmicb_2023_1098412 crossref_primary_10_1038_nm_4307 crossref_primary_10_3390_jcm11041118 crossref_primary_10_1016_j_bbi_2021_08_218 crossref_primary_10_1016_j_jff_2018_04_053 crossref_primary_10_1016_j_jbior_2016_11_001 crossref_primary_10_1099_jmm_0_000640 crossref_primary_10_3390_ijms23031105 crossref_primary_10_1016_j_neubiorev_2021_02_044 crossref_primary_10_1080_10428194_2020_1850718 crossref_primary_10_3389_fmed_2020_00207 crossref_primary_10_3390_nu10121862 crossref_primary_10_1080_19490976_2021_1922241 crossref_primary_10_23736_S2724_5985_22_03152_7 crossref_primary_10_3390_ijms23179577 crossref_primary_10_1111_imm_12939 crossref_primary_10_1002_ece3_10066 crossref_primary_10_1016_j_gtc_2017_08_002 crossref_primary_10_1126_sciadv_abd7954 crossref_primary_10_1016_j_jep_2020_113749 crossref_primary_10_1177_2050640618804444 crossref_primary_10_1038_s41598_018_22629_7 crossref_primary_10_1097_ALN_0000000000004204 crossref_primary_10_1097_MOG_0000000000000317 crossref_primary_10_1155_2018_7817360 crossref_primary_10_3389_fcell_2021_725821 crossref_primary_10_1007_s00109_017_1557_x crossref_primary_10_1152_ajpgi_00101_2018 crossref_primary_10_3389_fceng_2021_670440 crossref_primary_10_1038_s41598_018_20742_1 crossref_primary_10_1186_s40168_024_01758_4 crossref_primary_10_4110_in_2022_22_e44 crossref_primary_10_1016_j_jaci_2022_11_026 crossref_primary_10_1016_j_sintl_2023_100234 crossref_primary_10_1007_s11154_019_09513_z crossref_primary_10_1016_j_isci_2020_101522 crossref_primary_10_3389_fpls_2017_00587 crossref_primary_10_3389_fimmu_2018_01959 crossref_primary_10_1371_journal_pone_0172086 crossref_primary_10_3390_md15070207 crossref_primary_10_1093_ecco_jcc_jjab222 crossref_primary_10_3389_fnut_2022_917043 crossref_primary_10_3390_jcm11092365 crossref_primary_10_1080_10428194_2021_1953006 crossref_primary_10_1016_j_fct_2020_111946 crossref_primary_10_1007_s40495_017_0105_2 crossref_primary_10_1007_s42485_021_00062_1 crossref_primary_10_3390_jcm5120118 crossref_primary_10_3389_fphar_2022_842720 |
Cites_doi | 10.1096/fj.14-267690 10.4049/jimmunol.133.4.1748 10.1099/jmm.0.46189-0 10.3109/00365528809103964 10.1016/j.jmb.2005.08.043 10.1016/j.chom.2015.03.005 10.1038/nature07830 10.1186/1476-511X-8-25 10.1016/0304-4165(70)90296-5 10.1016/S0006-291X(03)00488-1 10.1136/gutjnl-2012-304119 10.1084/jem.20130877 10.1038/ijo.2015.84 10.1126/science.1110591 10.3945/jn.113.176875 10.1038/nature13475 10.1111/j.1462-2920.2009.02066.x 10.4049/jimmunol.150.12.5529 10.1007/978-1-4614-0998-4_5 10.1038/nature06881 10.1371/journal.pone.0066019 10.1038/nature08821 10.1053/j.gastro.2014.08.033 10.1111/j.1749-6632.2012.06553.x 10.1073/pnas.0712140105 10.1073/pnas.0706625104 10.1136/gut.2010.215665 10.1111/j.1574-6941.2002.tb00904.x 10.1136/gut.35.11.1557 10.1046/j.1365-2672.2003.01814.x 10.1126/science.1209791 10.1210/me.2003-0281 10.1126/science.1221789 10.1016/j.nut.2005.06.006 10.1016/j.it.2009.06.005 10.1073/pnas.0705963104 10.1007/s00281-014-0454-4 10.1111/j.1574-6941.2012.01475.x 10.1038/icb.2014.2 10.4049/jimmunol.181.1.680 10.1016/0304-4157(84)90005-4 10.1079/BJN20041107 10.1073/pnas.1211002109 10.1097/MIB.0000000000000215 10.1093/ajcn/71.1.343s 10.2353/ajpath.2008.070989 10.1073/pnas.1302856110 10.1016/j.intimp.2011.02.003 10.4103/0253-7613.75660 10.1038/nrgastro.2012.14 10.1016/j.cofs.2015.05.011 10.1016/S0016-5085(15)32321-0 10.1093/jn/130.2.208 10.1016/j.phrs.2012.05.006 10.1194/jlr.M042457 10.1615/CritRevEukarGeneExpr.v18.i3.20 10.1371/journal.pone.0035072 10.1111/cea.12291 10.1016/j.abb.2004.09.031 10.1016/S0168-6496(03)00207-1 10.1093/toxsci/kfp274 10.1002/ibd.20903 10.1016/j.atherosclerosis.2015.11.015 10.1038/nature12506 10.1016/S0928-8244(03)00008-7 10.1016/j.clnu.2006.07.008 10.1017/S0007114512005326 10.1074/jbc.M304816200 10.1093/jn/130.11.2648 10.1016/j.bcp.2005.12.027 10.1038/ng2032 10.1089/act.2006.12.310 10.1016/S0300-483X(01)00582-0 10.1073/pnas.2637002100 10.1289/ehp.01109983 10.1016/S0003-9861(02)00518-0 10.1128/AEM.66.4.1654-1661.2000 10.1084/jem.190.8.1123 10.1099/ijs.0.2008/004580-0 10.1038/35079107 10.1038/nature11450 10.1016/j.jnutbio.2010.05.009 10.1021/jf2049257 10.1002/ibd.21293 10.1074/jbc.R109.022848 10.1074/jbc.M109.093955 10.1146/annurev-physiol-021909-135922 10.1016/0016-5085(90)90825-L 10.1016/j.mrfmmm.2007.04.003 10.1038/oby.2006.40 10.1146/annurev.bi.50.070181.000323 10.1016/j.freeradbiomed.2015.06.030 10.1053/j.gastro.2011.04.011 10.1007/978-3-319-20750-6_7 10.1016/j.plefa.2014.09.003 10.1038/ncomms3469 10.1016/S0016-5085(00)70142-9 10.1371/journal.pbio.1001221 10.1126/science.1198469 10.1007/s00125-004-1654-6 10.3390/nu5083299 10.1053/j.gastro.2004.04.061 10.1053/j.gastro.2010.03.022 10.1007/s12275-008-0199-7 10.1038/nature10491 10.1111/j.1574-6941.2000.tb00764.x 10.1093/carcin/bgh230 10.1111/cmi.12308 10.1186/1741-7007-11-61 10.1074/jbc.M309262200 10.1016/j.bcp.2016.03.017 10.1073/pnas.0504978102 10.1172/JCI33084 10.1016/j.cellimm.2009.03.004 10.1146/annurev.nutr.22.111401.144957 10.1128/JCM.43.7.3380-3389.2005 10.1016/j.ccr.2012.05.016 10.1111/ijfs.12208 10.1016/0163-7827(84)90008-0 10.1111/j.1753-4887.2011.00388.x 10.1096/fj.02-1038com 10.1038/ncpgasthep0528 10.1126/science.1373522 10.1136/gut.35.1_Suppl.S35 10.1042/BJ20082222 10.1016/j.immuni.2013.08.002 10.1002/ibd.21638 10.1155/2016/3827684 10.1002/ptr.4989 10.1097/MOG.0000000000000057 10.4161/gmic.21865 10.1128/AEM.01855-06 10.1016/j.cell.2011.04.022 10.1016/j.pathophys.2014.05.002 10.1152/ajpgi.00167.2011 10.1381/0960892053923789 10.1038/nm.3145 10.1016/j.bone.2012.12.048 10.1074/jbc.M104798200 10.1021/tx034036r 10.1038/ismej.2012.146 10.2220/biomedres.27.243 10.1016/S0014-5793(00)01501-5 10.1016/j.tcb.2013.11.008 10.1016/S0955-2863(00)00141-8 10.1371/journal.pone.0143384 10.1371/journal.pone.0049138 10.1371/journal.pone.0097342 10.1271/bbb.120874 10.1038/nature18301 10.1053/j.gastro.2006.05.054 10.1677/jme.1.01946 10.1074/jbc.M708833200 10.1097/01.MIB.0000164016.98913.7c 10.1016/j.jnutbio.2013.05.001 10.1128/MCB.23.21.7525-7530.2003 10.1002/ibd.21377 10.1128/AEM.65.11.4799-4807.1999 10.1371/journal.pone.0076532 10.1016/S0271-5317(01)00284-6 10.1038/nm.3894 10.1099/mic.0.022921-0 10.1016/j.nut.2015.01.004 10.3389/fphys.2014.00151 10.1210/jc.2002-020635 10.1016/j.phrs.2013.01.003 10.1021/jf505050c 10.1210/en.2013-1142 10.2174/157339913805076490 10.1016/j.cell.2010.05.005 10.4161/gmic.19897 10.1042/bj2670727 10.1096/fj.01-0432com 10.1080/19490976.2015.1005477 10.3390/life5021333 10.1016/j.clnu.2010.02.009 10.1128/MCB.01338-07 10.1053/jhep.2000.9078 10.1016/j.freeradbiomed.2013.02.008 10.1016/j.chom.2007.09.013 10.1136/gut.31.5.539 10.1016/j.coi.2013.09.007 10.1093/ajcn/34.3.423 10.3390/nu3100858 10.1002/ibd.21501 10.1371/journal.pone.0125091 10.1002/eji.201344406 10.3945/ajcn.2008.26362 10.1016/j.immuni.2013.01.009 10.1093/ajcn/76.3.504 10.1016/j.bbalip.2014.08.010 10.1038/ismej.2009.112 10.1038/oby.2002.116 10.1038/ni.1657 10.1111/j.1365-2796.2007.01851.x 10.1016/j.cell.2011.09.025 10.1111/j.1365-2672.1996.tb03230.x 10.1038/ncomms3384 10.1096/fj.15-277731 10.1079/BJNBJN/2002541 10.1074/jbc.M508382200 10.1002/biot.201000066 10.1126/science.1243364 10.1210/jc.2012-4262 10.1016/j.cgh.2015.02.028 10.1016/S0022-4804(02)96498-X 10.1194/jlr.M047357 10.1159/000371687 10.1038/534182a 10.1084/jem.20081463 10.1016/j.jnutbio.2009.04.012 10.1007/978-1-4615-4111-0_9 10.1038/nature11605 10.1371/journal.pone.0042645 10.1152/physiol.00020.2008 10.1016/j.immuni.2011.03.003 10.1038/nature14232 10.1016/j.immuni.2013.08.003 10.1016/j.chom.2008.05.001 10.1079/PNS2002215 10.1128/aem.33.2.319-322.1977 10.1099/ijs.0.02873-0 10.1007/s12263-012-0302-x 10.1172/JCI25420 10.1136/gut.46.1.64 10.1038/ctg.2015.34 10.2220/biomedres.30.149 10.1111/j.1750-3841.2012.02911.x 10.1016/j.jnutbio.2009.10.004 10.1128/iai.57.3.845-849.1989 10.1111/j.1365-2249.1995.tb03130.x 10.1002/hep.1840020407 10.1038/ajg.2011.44 10.1093/toxsci/62.1.71 10.1097/01.MIB.0000435444.14860.ea 10.3389/fphys.2012.00448 10.1016/j.cofs.2015.10.002 10.4161/gmic.25723 10.3904/kjim.2016.31.1.30 10.1016/j.autrev.2009.02.011 10.1007/s00281-014-0455-3 10.1099/00207713-22-2-78 10.1128/JCM.01500-13 10.1016/j.molimm.2014.05.008 10.1152/ajpgi.00380.2006 10.1038/ncomms2113 10.1096/fj.04-3284com 10.1016/S0016-5085(99)70013-2 10.1016/j.anaerobe.2011.03.001 10.1136/gut.2009.201988 10.1126/scitranslmed.3000322 10.1080/00365520801935434 10.1111/j.1574-6968.2009.01750.x 10.1016/S0006-2952(98)00218-4 10.1038/cdd.2009.40 10.1016/j.intimp.2006.08.015 10.1254/jphs.13R18CP 10.1074/jbc.M109.044065 10.1016/0016-5085(81)90123-2 10.2337/db11-0227 10.1099/00222615-42-4-276 10.1016/j.jep.2014.06.032 10.1128/mBio.01243-14 10.1128/JCM.38.2.931-934.2000 10.1038/ismej.2014.14 10.1007/s10735-007-9145-y 10.3945/ajcn.2008.27023 10.1152/ajpgi.00459.2004 10.1080/16070658.2010.11734260 10.1016/j.nutres.2008.02.012 10.1038/nature05414 10.1301/nr.2006.feb.S27-S47 10.1158/0008-5472.CAN-07-6251 10.1016/j.ijmm.2016.02.010 10.1152/ajpgi.00147.2005 10.1039/c4fo00731j 10.1371/journal.pcbi.1003027 10.1016/j.bbapap.2008.08.012 10.3945/jn.111.147058 10.1128/AEM.72.3.1729-1738.2006 10.4161/gmic.26749 10.1016/j.clnu.2005.12.009 10.1007/s00535-010-0219-3 10.1053/j.gastro.2011.07.046 10.1046/j.1440-1746.1999.02024.x 10.1016/S1357-2725(03)00211-5 10.1016/j.cgh.2005.11.006 10.1096/fj.04-2204com 10.1073/pnas.0905745107 10.1016/j.it.2016.03.002 10.1093/jn/133.6.2068S 10.1194/jlr.R500013-JLR200 10.1155/2012/752015 10.1038/35079114 10.1111/j.1365-3083.2012.02740.x 10.3748/wjg.v20.i43.16062 10.3945/jn.108.101170 10.1016/j.jhep.2013.12.019 10.3177/jnsv.53.377 10.1038/nature08937 10.1158/1078-0432.CCR-08-2503 10.1161/hc0702.104279 10.1152/ajpregu.00235.2011 10.1158/0008-5472.CAN-10-1396 10.1016/j.bbadis.2012.05.001 10.1038/nm1652 10.1016/j.clinthera.2015.04.004 10.1126/science.1079490 10.1097/00004836-200603000-00015 10.1038/nature12721 10.1016/j.chom.2007.06.010 10.1126/science.1070477 10.1007/s00535-015-1064-1 10.1093/ajcn/80.6.1717S 10.1258/ebm.2010.009298 10.1038/oby.2009.167 10.4049/jimmunol.1101712 10.1083/jcb.200703099 10.1016/j.chom.2012.07.004 10.1124/dmd.111.039651 10.1016/0016-5085(88)90284-3 10.1007/s00894-010-0748-y 10.1016/j.febslet.2014.02.052 10.1073/pnas.0509592103 10.1002/ibd.20491 10.1007/s12035-013-8425-7 10.1371/journal.pone.0055468 10.1093/carcin/bgt310 10.1136/gut.19.12.1099 10.1186/gb-2012-13-9-r79 10.1016/S0924-8579(02)00205-4 10.3389/fimmu.2015.00555 10.1002/hep.23572 10.1073/pnas.88.21.9543 10.1158/0008-5472.CAN-13-1451 10.1016/j.jnutbio.2009.09.012 10.1038/sj.gene.6363716 10.1073/pnas.1219451110 10.1016/j.bcp.2006.12.018 10.1038/ismej.2012.4 10.1146/annurev.immunol.25.022106.141623 10.1093/jn/129.7.1239 10.1128/IAI.66.11.5157-5166.1998 10.1128/mBio.02481-14 10.1111/j.1742-4658.2009.07360.x 10.2174/092986711795656063 10.1021/jf204230r 10.1186/1465-9921-11-33 10.1016/j.prostaglandins.2014.10.003 10.1002/ejlt.201500424 10.3748/wjg.v20.i43.16079 10.1128/JB.01780-14 10.1016/j.cell.2011.07.033 10.1093/toxsci/kfn079 10.1074/jbc.M110.116004 10.1016/j.immuni.2006.01.001 10.1016/j.plefa.2013.09.011 10.1038/ismej.2010.118 10.1194/jlr.M200361-JLR200 10.1038/cmi.2013.48 10.1155/2013/397642 10.1002/ibd.20860 10.4161/15592294.2014.983366 10.1038/sj.emboj.7601049 10.1016/j.femsre.2004.09.003 10.1038/nri3430 10.1038/nature13158 10.1016/j.jnutbio.2012.07.010 10.1021/jf203641r 10.1136/gutjnl-2012-303839 10.1093/jn/137.1.200S 10.1038/nature05969 10.1073/pnas.0901529106 10.1016/S0006-2952(98)00143-9 10.1016/j.foodchem.2009.12.015 10.1038/ng1339 10.1136/gut.46.4.493 10.1016/j.humimm.2009.01.016 10.1371/journal.pone.0114934 10.1586/eci.10.31 10.1073/pnas.0812600106 10.1097/MCO.0b013e3283619e63 10.1039/c5ib00030k 10.1016/j.jsbmb.2015.01.011 10.3389/fcell.2014.00031 10.1124/mol.104.008722 10.3945/jn.113.180794 10.1016/j.chemosphere.2005.01.014 10.1038/nature13684 10.1016/j.taap.2013.03.032 10.1016/j.coph.2010.04.001 10.1002/ibd.20783 10.4049/jimmunol.175.11.7348 10.1016/j.bbalip.2006.05.007 10.1016/j.cell.2010.05.009 10.1136/gut.52.2.237 10.1152/ajpgi.00258.2010 10.2134/jas2000.77E-Suppl1f 10.1371/journal.pone.0022978 10.1126/science.1155725 10.1099/ijs.0.64098-0 10.1016/j.smim.2011.07.005 10.1111/j.1348-0421.1981.tb00001.x 10.1016/j.psyneuen.2013.02.008 10.1007/s00394-015-0852-y 10.1093/carcin/bgm166 10.1080/19490976.2014.997610 10.3390/nu7042930 10.1038/nature11582 10.2217/IMT.09.21 10.3389/fgene.2015.00148 10.1038/ng1954 10.1016/j.semcdb.2005.03.010 10.1136/gut.2010.232918 10.1016/j.plipres.2013.06.001 10.1002/ijc.2910550603 10.1016/j.jhep.2013.01.003 10.4061/2011/923250 10.1038/nature11986 10.1038/nature11053 10.1016/j.arteri.2014.02.007 10.1053/j.gastro.2012.06.031 10.1111/bph.12879 10.1016/j.jnutbio.2013.12.009 10.1016/j.clim.2010.04.018 10.1080/09687860500445604 10.1152/ajpgi.00152.2012 10.1155/2014/738512 10.1097/MPG.0b013e3181ae2ba0 10.1177/153537020422901108 10.1016/j.immuni.2013.12.007 10.4049/jimmunol.164.7.3596 10.1074/jbc.C109.071225 10.1038/nrmicro3050 10.1002/ejlt.200700080 10.1136/gutjnl-2013-304833 10.2174/138955709787001712 10.1128/JB.01359-06 10.1038/nature12726 10.1016/j.chom.2013.12.007 10.1016/0092-8674(93)80068-P 10.1016/S0083-6729(06)75002-6 10.1038/ctg.2013.9 10.1155/2008/520383 10.1210/jc.2005-1601 10.1093/jn/115.5.650 10.1111/j.1463-1326.2011.01400.x 10.1371/journal.pone.0009085 10.1016/j.chom.2014.11.010 10.1038/nature11225 10.1016/j.cellimm.2003.07.001 10.1093/toxsci/70.1.46 10.4049/jimmunol.0803736 10.1126/science.1123933 10.1002/ejlt.201100350 10.3389/fnut.2016.00005 10.1371/journal.pone.0073365 10.1016/j.it.2015.06.006 10.1093/toxsci/66.1.117 10.1017/S0954422410000247 10.1074/jbc.M603503200 10.1038/nature11552 10.1007/s00384-005-0019-z 10.1016/j.cmet.2013.03.013 10.1126/science.1237013 10.1073/pnas.0804812105 10.1007/s005350300021 10.1016/j.cgh.2005.12.015 10.2337/diabetes.47.6.913 10.1096/fj.05-3673fje 10.1242/jcs.111.22.3311 10.1210/me.2005-0106 10.1371/journal.pone.0052132 10.1084/jem.192.11.1545 10.1196/annals.1419.019 10.1021/jf204625y 10.1080/01635581.2013.804101 10.1126/science.1200439 10.1006/bbrc.2001.5832 10.1136/gut.29.5.608 10.1079/BJN2001460 10.1053/j.gastro.2011.01.054 10.1194/jlr.R036012 10.1038/nature07540 10.1038/ni.2847 10.1126/science.1247606 10.1097/BOR.0b013e32835cedbf 10.1073/pnas.0804231105 10.3748/wjg.15.5549 10.1002/bies.20708 10.1210/en.2005-0545 10.1126/science.1241214 10.1126/science.1109051 10.1002/iub.1428 10.1038/nature09922 10.1074/jbc.M414173200 10.1152/ajpgi.00073.2007 10.1371/journal.pone.0080476 10.1172/JCI25790 10.1073/pnas.0601280103 10.1016/j.jnutbio.2009.10.003 10.1038/ng.717 10.1038/ismej.2014.45 10.1111/j.1758-2229.2012.00334.x 10.1084/jem.20070590 10.1038/nature04753 10.1016/j.immuni.2011.07.002 10.1016/B978-0-12-800100-4.00003-9 10.1271/bbb.70463 10.1016/0026-0495(92)90140-6 10.1096/fasebj.5.11.1907934 10.1038/427504a 10.1111/j.1574-6941.1991.tb01742.x 10.1016/j.plipres.2012.02.003 10.1017/S0007114511007197 10.1074/jbc.M305213200 10.1007/978-1-62703-562-0_3 10.4049/jimmunol.181.7.4545 10.1016/j.febslet.2010.04.027 10.1111/j.1365-2036.2012.05181.x 10.1017/S0007114512001213 10.1158/1940-6207.CAPR-13-0131 10.1186/1471-2105-16-S12-S2 10.1038/nature12331 10.1016/S0140-6736(05)67119-X 10.1038/nrd2518 10.1177/154405910808700908 10.1097/MIB.0000000000000382 10.1210/jc.2004-0395 10.1038/nm1720 10.1016/j.prostaglandins.2012.01.005 10.1099/jmm.0.021170-0 10.1038/ctg.2015.16 10.1093/jn/130.9.2285 10.1093/nar/gkt1076 10.1128/AEM.70.8.4635-4641.2004 10.1007/BF00402304 10.1126/science.1241165 10.1182/blood-2004-11-4494 10.1054/clnu.2001.0503 10.1126/science.1214914 10.1136/gut.2005.073817 10.1074/jbc.M211609200 10.1126/science.1135245 10.1074/jbc.M110.160077 10.1073/pnas.1005963107 10.1053/j.gastro.2007.11.059 10.1021/jf301509w 10.1038/ismej.2008.37 10.1128/mBio.01438 10.1038/ncpgasthep0215 10.1016/j.tibs.2014.02.002 10.1016/j.chom.2014.02.005 10.1136/gut.2010.223263 10.1002/em.20546 10.1136/gut.2010.211706 10.1016/j.jff.2015.06.050 10.1038/nature12198 10.2337/db11-0112 10.1159/000337590 10.1128/AAC.40.2.302 10.1136/gut.2007.134668 10.1056/NEJMoa1109400 10.1084/jem.20121588 10.1042/bj3400715 10.1128/aem.55.9.2257-2261.1989 10.2337/diabetes.54.8.2277 10.1152/ajpcell.00379.2012 10.3389/fmicb.2011.00093 10.1007/s00281-006-0021-8 10.4161/cam.1.3.5062 10.1038/4441022a 10.1017/S0007114512001948 10.1152/ajpgi.00190.2011 10.1097/01.MIB.0000200323.38139.c6 10.1371/journal.pmed.0030287 10.1128/jcm.28.5.1060-1061.1990 10.1111/j.1365-2036.2008.03796.x 10.1136/gut.21.11.951 10.1016/j.cmet.2012.12.007 10.1007/s00125-007-0723-z 10.1093/jn/132.12.3566 10.3945/jn.112.167569 10.1007/978-3-319-20750-6_8 10.1038/nature08530 10.3136/fstr.10.273 10.1155/2015/143109 10.1126/science.1232467 10.2527/jas.2007-0588 10.1002/ibd.20392 10.1074/jbc.M301403200 10.1111/jgh.12252 10.1097/00003246-200209000-00011 10.1016/j.phrs.2012.11.005 10.1074/jbc.M112.396259 10.1038/ismej.2012.5 10.1089/ars.2012.4701 10.1038/nature09944 10.1007/s00253-006-0377-7 10.1097/01.MIB.0000209789.14114.63 10.1128/AEM.70.10.5810-5817.2004 10.1016/j.it.2012.10.001 10.1021/tx300169e |
ContentType | Journal Article |
Copyright | Copyright © 2016 Basson, Trotter, Rodriguez-Palacios and Cominelli. 2016 Basson, Trotter, Rodriguez-Palacios and Cominelli |
Copyright_xml | – notice: Copyright © 2016 Basson, Trotter, Rodriguez-Palacios and Cominelli. 2016 Basson, Trotter, Rodriguez-Palacios and Cominelli |
DBID | NPM AAYXX CITATION 7X8 5PM |
DOI | 10.3389/fimmu.2016.00290 |
DatabaseName | PubMed CrossRef MEDLINE - Academic PubMed Central (Full Participant titles) |
DatabaseTitle | PubMed CrossRef MEDLINE - Academic |
DatabaseTitleList | PubMed |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Biology |
EISSN | 1664-3224 |
EndPage | 290 |
ExternalDocumentID | 10_3389_fimmu_2016_00290 27531998 |
Genre | Journal Article Review |
GrantInformation_xml | – fundername: NIDDK NIH HHS grantid: R01 DK042191 – fundername: NIDDK NIH HHS grantid: P30 DK097948 – fundername: NIDDK NIH HHS grantid: R01 DK055812 – fundername: NIDDK NIH HHS grantid: P01 DK091222 – fundername: NIDDK NIH HHS grantid: R37 DK042191 – fundername: NIDDK NIH HHS grantid: R56 DK042191 – fundername: NIDDK NIH HHS grantid: T32 DK083251 – fundername: NIDDK NIH HHS grantid: R56 DK055812 – fundername: National Institutes of Health grantid: DK091222, DK042191, DK055812, and DK097948 |
GroupedDBID | 53G 5VS 9T4 AAFWJ AAKDD ACGFO ACGFS ACXDI ADBBV ADRAZ AENEX AFPKN ALMA_UNASSIGNED_HOLDINGS AOIJS BAWUL BCNDV DIK EBS EMOBN GROUPED_DOAJ GX1 HYE IAO IEA IHR IHW IPNFZ KQ8 M48 M~E NPM OK1 PGMZT RIG RNS RPM AAYXX CITATION 7X8 5PM |
ID | FETCH-LOGICAL-c462t-dc2238c137efabf3ca4d6adc4e3f609ee5ba8ef794ba5658a31e8c51bf8664b83 |
IEDL.DBID | RPM |
ISSN | 1664-3224 |
IngestDate | Tue Sep 17 21:03:02 EDT 2024 Sat Oct 05 05:02:13 EDT 2024 Thu Sep 26 16:09:45 EDT 2024 Sat Sep 28 08:18:16 EDT 2024 |
IsDoiOpenAccess | true |
IsOpenAccess | true |
IsPeerReviewed | true |
IsScholarly | true |
Keywords | fatty acids inflammation diet gut microbiota inflammatory bowel disease Crohn’s disease mucosal |
Language | English |
License | This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-c462t-dc2238c137efabf3ca4d6adc4e3f609ee5ba8ef794ba5658a31e8c51bf8664b83 |
Notes | ObjectType-Article-2 SourceType-Scholarly Journals-1 ObjectType-Feature-3 content type line 23 ObjectType-Review-1 Specialty section: This article was submitted to Nutritional Immunology, a section of the journal Frontiers in Immunology Edited by: Adria Carbo, Biotherapeutics Inc., USA Reviewed by: Kate J. Claycombe, USDA ARS, USA; Raquel Hontecillas, Virginia Tech, USA |
OpenAccessLink | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4970383/ |
PMID | 27531998 |
PQID | 1812442188 |
PQPubID | 23479 |
PageCount | 1 |
ParticipantIDs | pubmedcentral_primary_oai_pubmedcentral_nih_gov_4970383 proquest_miscellaneous_1812442188 crossref_primary_10_3389_fimmu_2016_00290 pubmed_primary_27531998 |
PublicationCentury | 2000 |
PublicationDate | 2016-08-02 |
PublicationDateYYYYMMDD | 2016-08-02 |
PublicationDate_xml | – month: 08 year: 2016 text: 2016-08-02 day: 02 |
PublicationDecade | 2010 |
PublicationPlace | Switzerland |
PublicationPlace_xml | – name: Switzerland |
PublicationTitle | Frontiers in immunology |
PublicationTitleAlternate | Front Immunol |
PublicationYear | 2016 |
Publisher | Frontiers Media S.A |
Publisher_xml | – name: Frontiers Media S.A |
References | Turnbaugh (B95) 2006; 444 Koeth (B501) 2013; 19 Islam (B379) 2011; 141 Peterson (B54) 2008; 3 Sonnenburg (B180) 2010; 141 Terakata (B424) 2013; 143 Michel (B608) 1996; 80 Gaci (B505) 2014; 20 Sokol (B70) 2008; 105 Lu (B42) 2011; 17 Carbo (B43) 2014; 5 Schmidt (B553) 2010; 285 Bhattacharyya (B602) 2008; 283 Al-Waiz (B498) 1992; 41 Inagaki (B620) 2007; 53 Bjeldanes (B440) 1991; 88 Kato (B463) 2003; 224 Serra-Majem (B247) 2006; 64 Everard (B128) 2011; 60 Baeke (B541) 2010; 10 Bardbori (B454) 2013 Fung (B237) 2012; 108 Opitz (B430) 2011; 478 Macpherson (B138) 2015; 36 Gombart (B546) 2005; 19 Everard (B129) 2013; 110 Williams (B470) 2008; 181 Lauritsen (B276) 1988; 95 Wang (B533) 2010; 285 de Vries (B339) 2014; 26 Schley (B83) 2002; 87 Smith (B147) 2013; 341 Gibson (B294) 2015; 6 Wang (B578) 2013; 34 Elinav (B236) 2011; 145 Chartoumpekis (B455) 2013; 9 Lukiw (B256) 2005; 115 Cheng (B366) 2004; 91 Winter (B184) 2013; 339 Salyers (B173) 1977; 33 Tyagi (B312) 2014; 91 Cushing (B244) 2015; 6 Knoch (B252) 2010; 5 Cantorna (B523) 2004; 80 Martinez-Medina (B67) 2009; 15 Rasmussen (B166) 1988; 23 Byrne (B220) 2015; 39 Alexander (B474) 1998; 111 Carvalho (B591) 2012; 12 Zeissig (B154) 2014; 15 Cadwell (B76) 2010; 141 Abdel Hadi (B351) 2016; 2016 Lang (B499) 1998; 56 Kjer-Nielsen (B489) 2012; 491 Habermann (B282) 2013; 8 IARC Working Group on the Evaluation of the Carcinogenic Risk of Chemicals to Humans (B604) 1983; 31 Peterson (B176) 2007; 2 Guri (B46) 2007; 26 Usami (B210) 2008; 28 Li (B529) 2015; 148 Petschow (B301) 1996; 40 Vassiliou (B253) 2009; 8 Marion-Letellier (B261) 2015; 67 Bajaj (B375) 2012; 302 Maslowski (B227) 2009; 461 Engel (B4) 2010; 45 Li (B416) 2011; 147 Horwitt (B487) 1981; 34 Mukhopadhya (B592) 2012; 9 Yuneva (B479) 2007; 178 Johnson (B433) 2009; 1 Michael Danielsen (B353) 2006; 23 Babcock (B250) 2002; 107 Furusawa (B149) 2013; 504 Hazell (B298) 1990; 28 Schwiertz (B135) 2010; 18 Hosseini (B189) 2011; 69 Macfarlane (B191) 1997 Bauman (B316) 2000; 77 Murray (B427) 1989; 57 Ahmed (B597) 2010; 121 Béligon (B307) 2016; 7 Teitelbaum (B144) 2001; 12 Mei (B38) 2015; 16 Guri (B44) 2010; 21 Masuda (B385) 1981; 25 Marlett (B598) 1985; 115 Willing (B59) 2009; 15 Ott (B73) 2008; 43 Lynes (B404) 2011; 301 Hardtke (B35) 2005; 106 Soo (B369) 2008; 22 Michel (B609) 2006; 71 Thomas (B611) 2011; 2 Ross (B446) 2002; 22 Flint (B196) 2012; 3 Thimmulappa (B466) 2006; 116 Van Harmelen (B106) 1998; 47 Jin (B557) 2015; 37 Ze (B175) 2012; 6 Horz (B504) 2015; 5 Lopez-Lazaro (B368) 2009; 9 Ridaura (B102) 2013; 341 Pitcher (B393) 2000; 46 Hoffmann (B185) 2013; 8 Duncan (B199) 2004; 70 Burger-van Paassen (B234) 2009; 420 Cowan (B571) 2014; 25 Le Poul (B212) 2003; 278 Park (B239) 2007; 7 Pérez-Brocal (B74) 2013; 4 Martens (B172) 2009; 284 Sokol (B71) 2009; 15 James (B248) 2000; 71 Mencarelli (B564) 2011; 6 Takahama (B595) 2012; 60 Cultrone (B81) 2015; 4 Linder (B400) 2013; 53 Kewley (B438) 2004; 36 Chassaing (B572) 2014; 147 Safe (B452) 2003; 16 Piwowarski (B584) 2014; 155 Nickerson (B600) 2012; 7 Blottiere (B207) 2003; 62 Guilloteau (B205) 2010; 23 Prada (B482) 2007; 50 Qin (B124) 2012; 490 Leach (B561) 2008; 28 Iwanaga (B156) 2006; 27 Poelstra (B399) 1997; 151 Ballantyne (B113) 2005; 15 Osburn (B469) 2008; 104 Guerre-Millo (B621) 2002; 10 Borthakur (B599) 2012; 1822 Yunoki (B349) 2008; 72 Wang (B434) 2006; 281 Bisgaard (B21) 2014; 44 Wanders (B217) 2011; 13 Chartoumpekis (B472) 2011; 60 Pot (B33) 2011; 23 Alvarez-Curto (B216) 2016 Kanehisa (B340) 2014; 42 Devillard (B321) 2007; 189 Breitfeld (B36) 2000; 192 Larrosa (B580) 2010; 21 Mills (B615) 2014; 24 Jacobs (B11) 2014; 588 Madsen (B563) 1999; 116 Nilsson (B213) 2003; 303 Hehemann (B610) 2010; 464 Shin (B441) 2013; 110 Rosillo (B579) 2012; 66 Lagerström (B435) 2008; 7 Ghosh (B309) 2013; 8 Borthakur (B601) 2007; 292 Lukovac (B208) 2014; 5 Campos (B272) 2002; 87 Reen (B408) 2002; 408 Josefowicz (B64) 2012; 30 Bajaj (B378) 2012; 303 Wong (B242) 2006; 40 Verway (B534) 2010; 6 Wang (B497) 2011; 472 Coombes (B516) 2007; 204 Yatsunenko (B288) 2012; 486 Abedi (B51) 2015 McEntee (B249) 2008; 173 Simopoulos (B284) 2010; 235 Gaffen (B25) 2008; 87 Kelly (B243) 2015; 17 Kawada (B365) 2013; 77 Kimura (B410) 2008; 105 Xie (B9) 1992; 256 Sun (B303) 2003; 36 Weylandt (B255) 2005; 366 Atarashi (B63) 2011; 331 Kostik (B245) 2013; 4 Davila (B170) 2013; 69 Kühn (B588) 1993; 75 Magnone (B49) 2015; 29 Conti (B411) 2014; 211 Kim (B159) 2013; 340 Chassard (B187) 2013; 16 Ridlon (B380) 2013; 4 Ziccardi (B112) 2002; 105 Oury (B336) 2014; 11 Peltekova (B12) 2004; 36 Fontenelle (B163) 2012; 76 Ito (B461) 2002; 70 Atarashi (B148) 2013; 500 Wrzosek (B233) 2013; 11 Guri (B45) 2010; 29 Shapiro (B140) 2015; 13 Wang (B68) 2014; 52 Kendrick (B209) 2010; 51 Hennessy (B306) 2016 Whiting (B271) 2005; 11 Tyagi (B313) 2012; 108 Goldberg (B405) 2008; 105 Zelante (B421) 2013; 39 Perez (B562) 2008 Ghosh (B295) 2013; 110 Li (B223) 2014; 9 Moreira (B338) 2012; 108 Stewart (B287) 2005; 54 Devkota (B388) 2015; 33 Proal (B548) 2013; 25 Lepage (B289) 2011; 141 Ooi (B555) 2013; 143 Park (B8) 2009; 458 Kantor (B281) 2014; 66 Duric (B495) 2012; 114 Carbo (B52) 2013; 9 Asano (B188) 2004; 10 Cantorna (B522) 2005; 76 MacDonald (B554) 2012; 60 Wong (B331) 2009; 284 Jones (B536) 2013; 98 Correia (B304) 2012; 7 Gevers (B560) 2014; 15 de Giorgio (B84) 2010; 138 Ahmad (B241) 2000; 46 Li (B57) 2015; 21 Xiong (B228) 2004; 101 Wright (B55) 2015; 21 Duerr (B14) 2006; 314 Stubbs (B141) 1984; 779 de Aguiar Vallim (B371) 2013; 17 Matsuoka (B56) 2015; 37 van de Pavert (B519) 2014; 508 Ley (B97) 2006; 444 Narisawa (B403) 2003; 23 Rubic (B619) 2008; 9 Kershaw (B105) 2004; 89 Hadi (B367) 2015; 10 Elsden (B169) 1978; 117 Paturi (B569) 2013; 48 Lupp (B72) 2007; 2 Tilg (B117) 2006; 131 Kang (B264) 2004; 427 Esser (B442) 2009; 30 Verma (B39) 2016; 3 Masui (B224) 2013; 19 Rehman (B556) 2010; 59 Hankinson (B458) 2005; 433 Akimova (B152) 2010; 136 Mortensen (B165) 1990; 98 Nickerson (B587) 2015; 6 Dumoutier (B417) 2000; 1 Rioux (B15) 2007; 39 Chapkin (B310) 2007; 137 Taleb (B115) 2006; 91 Frank (B61) 2007; 104 Murphy (B96) 2010; 59 Zheng (B419) 2008; 14 Truchado (B585) 2011; 60 Singh (B158) 2014; 40 Bernstein (B381) 2006; 12 Hatoff (B396) 1982; 2 Jostins (B18) 2012; 491 Mucida (B28) 2007; 1 Ciolino (B445) 1999; 340 Porenta (B286) 2013; 6 Tan (B155) 2014; 121 Puel (B413) 2011; 332 de Souza (B484) 2015; 31 Joossens (B121) 2011; 60 Innis (B296) 2010; 299 Tazoe (B221) 2009; 30 Lieberman (B329) 2006; 12 Suri-Payer (B27) 2006; 28 Levitt (B92) 2006; 4 Ramasamy (B407) 2011; 17 Ridlon (B370) 2006; 47 Davila (B171) 2013; 68 Vijay-Kumar (B589) 2007; 117 Lucas (B151) 2009; 257 Hoshi (B343) 2012; 3 Kruglov (B520) 2013; 342 Bhattacharyya (B605) 2013; 2013 Eloranta (B374) 2008; 23 Liu (B542) 2006; 311 Tsujikawa (B346) 1999; 14 Novak (B480) 2002; 30 Segal (B510) 1988; 29 Kiss (B422) 2011; 334 Amarasekera (B292) 2014; 9 Khulusi (B300) 1995; 42 Johnson (B467) 2010; 114 Swidsinski (B120) 2005; 43 Camuesco (B574) 2006; 25 Jacobson (B293) 2005; 289 Turnbaugh (B100) 2009; 1 Liu (B521) 2014; 9 Clement (B108) 2004; 18 Birkinshaw (B490) 2014; 26 Tao (B161) 2007; 13 Nava (B506) 2012; 4 Veldhoen (B19) 2015; 21 Hokari (B278) 2013; 28 Inouye (B462) 2005; 60 Ansel (B34) 1999; 190 Thomas (B429) 1993; 150 Jung (B305) 2016; 31 Gago-Dominguez (B285) 2004; 25 Conti (B412) 2009; 206 Ciolino (B447) 1998; 56 Spencer (B515) 2014; 343 Lee (B327) 2006; 1761 Nakamura (B359) 2006; 71 Sokol (B62) 2008; 14 Vesper (B348) 1999; 129 Nagy-Szakal (B297) 2015; 29 Arpaia (B150) 2013; 504 den Besten (B203) 2013; 54 Hekmatdoost (B311) 2008; 27 Tannahill (B614) 2013; 496 Manichanh (B10) 2006; 55 Yuan (B218) 2015; 63 Hwu (B426) 2000; 164 McIntosh (B437) 2010; 72 Chassaing (B590) 2015; 519 Callero (B453) 2011; 2011 Bhalla (B539) 1984; 133 Jakobsdottir (B566) 2013; 8 Kumar (B409) 2001; 276 Milligan (B215) 2015; 172 Gibson (B389) 1991; 86 Thompson (B299) 1994; 35 Anonymous (B496) 2013 Wall (B328) 2009; 89 Peyrin-Biroulet (B232) 2010; 107 Niture (B475) 2014; 66 Vilaseca (B277) 1990; 31 Nordgaard (B167) 1995; 11 McIntosh (B322) 2009; 155 Munn (B425) 2013; 34 Bajaj (B377) 2014; 60 Karaki (B226) 2008; 39 Coakley (B325) 2003; 94 Mukherjee (B257) 2007; 104 Brosnan (B478) 2003; 133 Turnbaugh (B98) 2009; 457 Makishima (B552) 2002; 296 Taylor (B428) 1991; 5 Loubinoux (B391) 2000; 38 Khan (B492) 2012; 17 Elangovan (B214) 2014; 74 Hehemann (B612) 2012; 109 Precechtelova (B134) 2014; 2014 Brenner (B142) 1984; 23 Pizarro (B79) 2011; 17 El Kaoutari (B174) 2013; 11 Bartik (B549) 2010; 21 Inan (B235) 2000; 118 Tachon (B131) 2013; 83 Pettus (B357) 2003; 278 Attene-Ramos (B183) 2010; 51 Nakamura (B362) 2014; 124 Laviano (B246) 2010; 23 Kiss (B415) 2012; 3 Vigano (B531) 2006; 36 Di Gioia (B335) 2015; 63 Carbonero (B186) 2012; 3 Cantorna (B526) 2000; 130 Taleb (B114) 2005; 19 Sonnenburg (B179) 2005; 307 Veldhoen (B414) 2008; 453 Marchand (B511) 1993; 55 Motoshima (B107) 2002; 87 Santora (B320) 2000; 130 Tims (B290) 2013; 7 Maa (B240) 2010; 21 Hudert (B265) 2006; 103 Cardona (B573) 2013; 24 Hampe (B13) 2006; 39 Luebke (B464) 2001; 62 Mielke (B518) 2013; 210 Duncan (B200) 2006; 56 McDonald (B146) 1980; 239 Im (B258) 2012; 51 Mane (B344) 2009; 139 Darfeuille-Michaud (B65) 2004; 127 Mahowald (B195) 2009; 106 Roy (B314) 2007; 622 Marquet (B202) 2009; 299 Macho Fernandez (B535) 2011; 60 Walker (B558) 2012 Morgan (B69) 2012; 13 Anderson (B5) 2002; 132 Murakami (B456) 2015; 88 Li (B387) 2013; 4 Murugaiyan (B477) 2013; 269 Anonymous (B485) 2007 Wang (B530) 2005; 19 Liu (B190) 2008; 1125 Kullberg (B593) 1998; 66 Sheehan (B20) 2015; 50 Lepage (B75) 2008; 57 Rao (B392) 2001; 21 Hall (B514) 2011; 34 Cesario (B432) 2011; 18 Guzy (B616) 2008; 28 Robert (B193) 2003; 46 Tremaroli (B136) 2012; 489 Duda-Chodak (B575) 2015; 54 Louis (B201) 2010; 12 Masoodi (B263) 2013; 8 Nøhr (B222) 2013; 154 Dang (B618) 2011; 146 Blain (B104) 2002; 21 Barcenilla (B197) 2000; 66 Karlsson (B126) 2013; 498 Park (B364) 2010; 50 Derrien (B127) 2004; 54 Vinolo (B162) 2011; 3 Erickson (B181) 2012; 7 Tabbaa (B275) 2013; 5 Hannun (B354) 2013 Paturi (B568) 2012; 77 Lee (B330) 2003; 278 Pettus (B361) 2004; 279 Matsunaga (B273) 2008; 14 Ohta (B345) 2003; 38 Jia (B268) 2008; 68 Hatoff (B395) 1981; 80 Haritunians (B78) 2010; 16 Seksik (B559) 2003; 52 Zinkevich (B390) 2000; 34 Zaahl (B16) 2006; 21 Westermann (B194) 1989; 55 Le Chatelier (B119) 2013; 500 Gonzalez-Barrio (B583) 2011; 39 Hugot (B2) 2001; 411 Barr |
References_xml | – volume: 29 start-page: 3151 year: 2015 ident: B297 article-title: Loss of n-6 fatty acid induced pediatric obesity protects against acute murine colitis publication-title: FASEB J doi: 10.1096/fj.14-267690 contributor: fullname: Nagy-Szakal – volume: 133 start-page: 1748 year: 1984 ident: B539 article-title: 1, 25-Dihydroxyvitamin D3 inhibits antigen-induced T cell activation publication-title: J Immunol doi: 10.4049/jimmunol.133.4.1748 contributor: fullname: Bhalla – volume: 54 start-page: 1239 year: 2005 ident: B287 article-title: Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children publication-title: J Med Microbiol doi: 10.1099/jmm.0.46189-0 contributor: fullname: Stewart – volume: 23 start-page: 178 year: 1988 ident: B166 article-title: Degradation of amino acids to short-chain fatty acids in humans: an in vitro study publication-title: Scand J Gastroenterol doi: 10.3109/00365528809103964 contributor: fullname: Rasmussen – volume: 353 start-page: 664 year: 2005 ident: B436 article-title: Structural basis of ARNT PAS-B dimerization: use of a common beta-sheet interface for hetero-and homodimerization publication-title: J Mol Biol doi: 10.1016/j.jmb.2005.08.043 contributor: fullname: Card – volume: 17 start-page: 662 year: 2015 ident: B243 article-title: Crosstalk between microbiota-derived short-chain fatty acids and intestinal epithelial HIF augments tissue barrier function publication-title: Cell Host Microbe doi: 10.1016/j.chom.2015.03.005 contributor: fullname: Kelly – volume: 458 start-page: 1191 year: 2009 ident: B8 article-title: The structural basis of lipopolysaccharide recognition by the TLR4–MD-2 complex publication-title: Nature doi: 10.1038/nature07830 contributor: fullname: Park – volume: 8 start-page: 25 year: 2009 ident: B253 article-title: Oleic acid and peanut oil high in oleic acid reverse the inhibitory effect of insulin production of the inflammatory cytokine TNF-α both in vitro and in vivo systems publication-title: Lipids Health Dis doi: 10.1186/1476-511X-8-25 contributor: fullname: Vassiliou – volume: 201 start-page: 226 year: 1970 ident: B402 article-title: Increased lymph alkaline phosphatase after fat feeding: effects of medium chain triglycerides and inhibition of protein synthesis publication-title: Biochim Biophys Acta doi: 10.1016/0304-4165(70)90296-5 contributor: fullname: Glickman – volume: 303 start-page: 1047 year: 2003 ident: B213 article-title: Identification of a free fatty acid receptor, FFA 2 R, expressed on leukocytes and activated by short-chain fatty acids publication-title: Biochem Biophys Res Commun doi: 10.1016/S0006-291X(03)00488-1 contributor: fullname: Nilsson – volume: 63 start-page: 116 year: 2014 ident: B570 article-title: Western diet induces dysbiosis with increased E. coli in CEABAC10 mice, alters host barrier function favouring AIEC colonisation publication-title: Gut doi: 10.1136/gutjnl-2012-304119 contributor: fullname: Martinez-Medina – volume: 211 start-page: 2075 year: 2014 ident: B411 article-title: Oral-resident natural Th17 cells and γδ T cells control opportunistic Candida albicans infections publication-title: J Exp Med doi: 10.1084/jem.20130877 contributor: fullname: Conti – volume: 39 start-page: 1331 year: 2015 ident: B220 article-title: The role of short chain fatty acids in appetite regulation and energy homeostasis publication-title: Int J Obes doi: 10.1038/ijo.2015.84 contributor: fullname: Byrne – volume: 308 start-page: 1635 year: 2005 ident: B85 article-title: Diversity of the human intestinal microbial flora publication-title: Science doi: 10.1126/science.1110591 contributor: fullname: Eckburg – volume: 143 start-page: 1046 year: 2013 ident: B424 article-title: The niacin required for optimum growth can be synthesized from l-tryptophan in growing mice lacking tryptophan-2,3-dioxygenase publication-title: J Nutr doi: 10.3945/jn.113.176875 contributor: fullname: Terakata – volume: 510 start-page: 58 year: 2014 ident: B352 article-title: Sphingolipid metabolites in inflammatory disease publication-title: Nature doi: 10.1038/nature13475 contributor: fullname: Maceyka – volume: 12 start-page: 304 year: 2010 ident: B201 article-title: Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA: acetate CoA-transferase gene publication-title: Environ Microbiol doi: 10.1111/j.1462-2920.2009.02066.x contributor: fullname: Louis – volume: 150 start-page: 5529 year: 1993 ident: B429 article-title: IFN-gamma-mediated antimicrobial response. Indoleamine 2,3-dioxygenase-deficient mutant host cells no longer inhibit intracellular Chlamydia spp. or Toxoplasma growth publication-title: J Immunol doi: 10.4049/jimmunol.150.12.5529 contributor: fullname: Thomas – start-page: 85 volume-title: Crohn’s Disease and Ulcerative Colitis year: 2012 ident: B558 article-title: Intestinal microbiology and ecology in inflammatory bowel disease doi: 10.1007/978-1-4614-0998-4_5 contributor: fullname: Walker – volume: 453 start-page: 106 year: 2008 ident: B414 article-title: The aryl hydrocarbon receptor links TH17-cell-mediated autoimmunity to environmental toxins publication-title: Nature doi: 10.1038/nature06881 contributor: fullname: Veldhoen – volume: 8 start-page: e66019 year: 2013 ident: B185 article-title: Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents publication-title: PLoS One doi: 10.1371/journal.pone.0066019 contributor: fullname: Hoffmann – volume: 464 start-page: 59 year: 2010 ident: B90 article-title: A human gut microbial gene catalogue established by metagenomic sequencing publication-title: Nature doi: 10.1038/nature08821 contributor: fullname: Qin – volume: 147 start-page: 1363 year: 2014 ident: B572 article-title: Intestinal epithelial cell toll-like receptor 5 regulates the intestinal microbiota to prevent low-grade inflammation and metabolic syndrome in mice publication-title: Gastroenterology doi: 10.1053/j.gastro.2014.08.033 contributor: fullname: Chassaing – volume: 1258 start-page: 52 year: 2012 ident: B550 article-title: Microbial butyrate and its role for barrier function in the gastrointestinal tract publication-title: Ann N Y Acad Sci doi: 10.1111/j.1749-6632.2012.06553.x contributor: fullname: Plöger – volume: 105 start-page: 3551 year: 2008 ident: B405 article-title: Intestinal alkaline phosphatase is a gut mucosal defense factor maintained by enteral nutrition publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.0712140105 contributor: fullname: Goldberg – volume: 104 start-page: 13780 year: 2007 ident: B61 article-title: Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.0706625104 contributor: fullname: Frank – volume: 59 start-page: 1635 year: 2010 ident: B96 article-title: Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models publication-title: Gut doi: 10.1136/gut.2010.215665 contributor: fullname: Murphy – volume: 39 start-page: 33 year: 2002 ident: B87 article-title: Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis publication-title: FEMS Microbiol Ecol doi: 10.1111/j.1574-6941.2002.tb00904.x contributor: fullname: Hold – volume: 35 start-page: 1557 year: 1994 ident: B299 article-title: Inhibitory effect of polyunsaturated fatty acids on the growth of Helicobacter pylori: a possible explanation of the effect of diet on peptic ulceration publication-title: Gut doi: 10.1136/gut.35.11.1557 contributor: fullname: Thompson – volume: 94 start-page: 138 year: 2003 ident: B325 article-title: Conjugated linoleic acid biosynthesis by human-derived Bifidobacterium species publication-title: J Appl Microbiol doi: 10.1046/j.1365-2672.2003.01814.x contributor: fullname: Coakley – volume: 334 start-page: 255 year: 2011 ident: B420 article-title: The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine publication-title: Science doi: 10.1126/science.1209791 contributor: fullname: Vaishnava – volume: 17 start-page: 2386 year: 2003 ident: B528 article-title: A crucial role for the vitamin D receptor in experimental inflammatory bowel diseases publication-title: Mol Endocrinol doi: 10.1210/me.2003-0281 contributor: fullname: Froicu – volume: 336 start-page: 1314 year: 2012 ident: B77 article-title: Interactions between commensal fungi and the C-type lectin receptor Dectin-1 influence colitis publication-title: Science doi: 10.1126/science.1221789 contributor: fullname: Iliev – volume: 22 start-page: 275 year: 2006 ident: B251 article-title: Dietary fatty acids modulate chronic colitis, colitis-associated colon neoplasia and COX-2 expression in IL-10 knockout mice publication-title: Nutrition doi: 10.1016/j.nut.2005.06.006 contributor: fullname: Hegazi – volume: 30 start-page: 447 year: 2009 ident: B442 article-title: The aryl hydrocarbon receptor in immunity publication-title: Trends Immunol doi: 10.1016/j.it.2009.06.005 contributor: fullname: Esser – volume: 104 start-page: 13158 year: 2007 ident: B257 article-title: Photoreceptor outer segment phagocytosis attenuates oxidative stress-induced apoptosis with concomitant neuroprotectin D1 synthesis publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.0705963104 contributor: fullname: Mukherjee – volume: 37 start-page: 47 year: 2015 ident: B56 article-title: The gut microbiota and inflammatory bowel disease publication-title: Semin Immunopathol doi: 10.1007/s00281-014-0454-4 contributor: fullname: Matsuoka – volume: 83 start-page: 299 year: 2013 ident: B131 article-title: The intestinal microbiota in aged mice is modulated by dietary resistant starch and correlated with improvements in host responses publication-title: FEMS Microbiol Ecol doi: 10.1111/j.1574-6941.2012.01475.x contributor: fullname: Tachon – volume: 92 start-page: 460 year: 2014 ident: B448 article-title: Identification of a probiotic bacteria-derived activator of the aryl hydrocarbon receptor that inhibits colitis publication-title: Immunol Cell Biol doi: 10.1038/icb.2014.2 contributor: fullname: Fukumoto – volume: 181 start-page: 680 year: 2008 ident: B468 article-title: The transcription factor Nrf2 is a therapeutic target against brain inflammation publication-title: J Immunol doi: 10.4049/jimmunol.181.1.680 contributor: fullname: Innamorato – volume: 779 start-page: 89 year: 1984 ident: B141 article-title: The modification of mammalian membrane polyunsaturated fatty acid composition in relation to membrane fluidity and function publication-title: Biochim Biophys Acta doi: 10.1016/0304-4157(84)90005-4 contributor: fullname: Stubbs – volume: 91 start-page: 715 year: 2004 ident: B366 article-title: Psyllium and fat in diets differentially affect the activities and expressions of colonic sphingomyelinases and caspase in mice publication-title: Br J Nutr doi: 10.1079/BJN20041107 contributor: fullname: Cheng – volume: 109 start-page: 19786 year: 2012 ident: B612 article-title: Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.1211002109 contributor: fullname: Hehemann – volume: 21 start-page: 139 year: 2015 ident: B57 article-title: Functional impacts of the intestinal microbiome in the pathogenesis of inflammatory bowel disease publication-title: Inflamm Bowel Dis doi: 10.1097/MIB.0000000000000215 contributor: fullname: Li – volume: 71 start-page: 343S issue: 1 Suppl year: 2000 ident: B248 article-title: Dietary polyunsaturated fatty acids and inflammatory mediator production publication-title: Am J Clin Nutr doi: 10.1093/ajcn/71.1.343s contributor: fullname: James – volume: 173 start-page: 229 year: 2008 ident: B249 article-title: Dietary n-3 polyunsaturated fatty acids enhance hormone ablation therapy in androgen-dependent prostate cancer publication-title: Am J Pathol doi: 10.2353/ajpath.2008.070989 contributor: fullname: McEntee – volume: 110 start-page: 12391 year: 2013 ident: B441 article-title: Modulation of natural killer cell antitumor activity by the aryl hydrocarbon receptor publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.1302856110 contributor: fullname: Shin – volume: 11 start-page: 915 year: 2011 ident: B581 article-title: Natural almond skin reduced oxidative stress and inflammation in an experimental model of inflammatory bowel disease publication-title: Int Immunopharmacol doi: 10.1016/j.intimp.2011.02.003 contributor: fullname: Mandalari – volume: 43 start-page: 18 year: 2011 ident: B582 article-title: Effect of fruit extract of Fragaria vesca L. on experimentally induced inflammatory bowel disease in albino rats publication-title: Indian J Pharmacol doi: 10.4103/0253-7613.75660 contributor: fullname: Kanodia – volume: 9 start-page: 219 year: 2012 ident: B592 article-title: IBD – what role do Proteobacteria play? publication-title: Nat Rev Gastroenterol Hepatol doi: 10.1038/nrgastro.2012.14 contributor: fullname: Mukhopadhya – volume: 4 start-page: 64 year: 2015 ident: B81 article-title: Metagenomics of the human intestinal tract: from who is there to what is done there publication-title: Curr Opin Food Sci doi: 10.1016/j.cofs.2015.05.011 contributor: fullname: Cultrone – volume: 148 start-page: S year: 2015 ident: B50 article-title: Mo1691 lanthionine synthetase C-like receptor 2 (LANCL2): a novel therapeutic target for inflammatory bowel disease publication-title: Gastroenterology doi: 10.1016/S0016-5085(15)32321-0 contributor: fullname: Carbo – volume: 130 start-page: 208 year: 2000 ident: B320 article-title: Trans-vaccenic acid is desaturated to conjugated linoleic acid in mice publication-title: J Nutr doi: 10.1093/jn/130.2.208 contributor: fullname: Santora – volume: 66 start-page: 235 year: 2012 ident: B579 article-title: Dietary supplementation of an ellagic acid-enriched pomegranate extract attenuates chronic colonic inflammation in rats publication-title: Pharmacol Res doi: 10.1016/j.phrs.2012.05.006 contributor: fullname: Rosillo – volume: 54 start-page: 3130 year: 2013 ident: B269 article-title: n-3 PUFAs enhance the frequency of murine B-cell subsets and restore the impairment of antibody production to a T-independent antigen in obesity publication-title: J Lipid Res doi: 10.1194/jlr.M042457 contributor: fullname: Teague – volume: 18 start-page: 207 year: 2008 ident: B451 article-title: The aryl hydrocarbon receptor complex and the control of gene expression publication-title: Crit Rev Eukaryot Gene Expr doi: 10.1615/CritRevEukarGeneExpr.v18.i3.20 contributor: fullname: Beischlag – volume: 7 start-page: e35072 year: 2012 ident: B304 article-title: Docosahexaenoic acid inhibits Helicobacter pylori growth in vitro and mice gastric mucosa colonization publication-title: PLoS One doi: 10.1371/journal.pone.0035072 contributor: fullname: Correia – volume: 44 start-page: 475 year: 2014 ident: B21 article-title: Immune-mediated diseases and microbial exposure in early life publication-title: Clin Exp Allergy doi: 10.1111/cea.12291 contributor: fullname: Bisgaard – volume: 433 start-page: 379 year: 2005 ident: B458 article-title: Role of coactivators in transcriptional activation by the aryl hydrocarbon receptor publication-title: Arch Biochem Biophys doi: 10.1016/j.abb.2004.09.031 contributor: fullname: Hankinson – volume: 46 start-page: 81 year: 2003 ident: B193 article-title: The cellulolytic microflora of the human colon: evidence of microcrystalline cellulose-degrading bacteria in methane-excreting subjects publication-title: FEMS Microbiol Ecol doi: 10.1016/S0168-6496(03)00207-1 contributor: fullname: Robert – volume: 114 start-page: 237 year: 2010 ident: B467 article-title: The absence of the pro-antioxidant transcription factor Nrf2 exacerbates experimental autoimmune encephalomyelitis publication-title: Toxicol Sci doi: 10.1093/toxsci/kfp274 contributor: fullname: Johnson – volume: 15 start-page: 1183 year: 2009 ident: B71 article-title: Low counts of Faecalibacterium prausnitzii in colitis microbiota publication-title: Inflamm Bowel Dis doi: 10.1002/ibd.20903 contributor: fullname: Sokol – volume: 244 start-page: 211 year: 2016 ident: B333 article-title: Saturated fatty acids trigger TLR4-mediated inflammatory response publication-title: Atherosclerosis doi: 10.1016/j.atherosclerosis.2015.11.015 contributor: fullname: Rocha – volume: 500 start-page: 541 year: 2013 ident: B119 article-title: Richness of human gut microbiome correlates with metabolic markers publication-title: Nature doi: 10.1038/nature12506 contributor: fullname: Le Chatelier – volume: 36 start-page: 9 year: 2003 ident: B303 article-title: Antibacterial actions of fatty acids and monoglycerides against Helicobacter pylori publication-title: FEMS Immunol Med Microbiol doi: 10.1016/S0928-8244(03)00008-7 contributor: fullname: Sun – volume: 26 start-page: 107 year: 2007 ident: B46 article-title: Dietary abscisic acid ameliorates glucose tolerance and obesity-related inflammation in db/db mice fed high-fat diets publication-title: Clin Nutr doi: 10.1016/j.clnu.2006.07.008 contributor: fullname: Guri – volume: 110 start-page: 515 year: 2013 ident: B295 article-title: Diets rich in n-6 PUFA induce intestinal microbial dysbiosis in aged mice publication-title: Br J Nutr doi: 10.1017/S0007114512005326 contributor: fullname: Ghosh – volume: 278 start-page: 38206 year: 2003 ident: B357 article-title: Ceramide kinase mediates cytokine- and calcium ionophore-induced arachidonic acid release publication-title: J Biol Chem doi: 10.1074/jbc.M304816200 contributor: fullname: Pettus – volume: 130 start-page: 2648 year: 2000 ident: B526 article-title: 1, 25-Dihydroxycholecalciferol prevents and ameliorates symptoms of experimental murine inflammatory bowel disease publication-title: J Nutr doi: 10.1093/jn/130.11.2648 contributor: fullname: Cantorna – volume: 71 start-page: 850 year: 2006 ident: B359 article-title: Ceramide-1-phosphate activates cytosolic phospholipase A2α directly and by PKC pathway publication-title: Biochem Pharmacol doi: 10.1016/j.bcp.2005.12.027 contributor: fullname: Nakamura – volume: 39 start-page: 596 year: 2007 ident: B15 article-title: Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis publication-title: Nat Genet doi: 10.1038/ng2032 contributor: fullname: Rioux – volume: 12 start-page: 310 year: 2006 ident: B329 article-title: A review of monolaurin and lauric acid: natural virucidal and bactericidal agents publication-title: Altern Complement Ther doi: 10.1089/act.2006.12.310 contributor: fullname: Lieberman – volume: 172 start-page: 49 year: 2002 ident: B460 article-title: Effects of 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD) on T cell-derived cytokine production in ovalbumin (OVA)-immunized C57Bl/6 mice publication-title: Toxicology doi: 10.1016/S0300-483X(01)00582-0 contributor: fullname: Nohara – volume: 101 start-page: 1045 year: 2004 ident: B228 article-title: Short-chain fatty acids stimulate leptin production in adipocytes through the G protein-coupled receptor GPR41 publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.2637002100 contributor: fullname: Xiong – volume: 109 start-page: 983 year: 2001 ident: B603 article-title: Review of harmful gastrointestinal effects of carrageenan in animal experiments publication-title: Environ Health Perspect doi: 10.1289/ehp.01109983 contributor: fullname: Tobacman – volume: 408 start-page: 93 year: 2002 ident: B408 article-title: The subdomains of the transactivation domain of the aryl hydrocarbon receptor (AhR) inhibit AhR and estrogen receptor transcriptional activity publication-title: Arch Biochem Biophys doi: 10.1016/S0003-9861(02)00518-0 contributor: fullname: Reen – volume: 66 start-page: 1654 year: 2000 ident: B197 article-title: Phylogenetic relationships of butyrate-producing bacteria from the human gut publication-title: Appl Environ Microbiol doi: 10.1128/AEM.66.4.1654-1661.2000 contributor: fullname: Barcenilla – volume: 190 start-page: 1123 year: 1999 ident: B34 article-title: In vivo-activated CD4 T cells upregulate CXC chemokine receptor 5 and reprogram their response to lymphoid chemokines publication-title: J Exp Med doi: 10.1084/jem.190.8.1123 contributor: fullname: Ansel – volume: 58 start-page: 1735 year: 2008 ident: B198 article-title: Proposal of a neotype strain (A1-86) for Eubacterium rectale. Request for an opinion publication-title: Int J Syst Evol Microbiol doi: 10.1099/ijs.0.2008/004580-0 contributor: fullname: Duncan – volume: 411 start-page: 599 year: 2001 ident: B2 article-title: Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn’s disease publication-title: Nature doi: 10.1038/35079107 contributor: fullname: Hugot – volume: 490 start-page: 55 year: 2012 ident: B124 article-title: A metagenome-wide association study of gut microbiota in type 2 diabetes publication-title: Nature doi: 10.1038/nature11450 contributor: fullname: Qin – volume: 22 start-page: 712 year: 2011 ident: B231 article-title: Inulin-type fructans with prebiotic properties counteract GPR43 overexpression and PPARγ-related adipogenesis in the white adipose tissue of high-fat diet-fed mice publication-title: J Nutr Biochem doi: 10.1016/j.jnutbio.2010.05.009 contributor: fullname: Dewulf – volume: 60 start-page: 1102 year: 2012 ident: B595 article-title: Effects of the food additive sulfite on nitrite-dependent nitric oxide production under Conditions simulating the mixture of saliva and gastric juice publication-title: J Agric Food Chem doi: 10.1021/jf2049257 contributor: fullname: Takahama – volume: 16 start-page: 1830 year: 2010 ident: B78 article-title: Genetic predictors of medically refractory ulcerative colitis publication-title: Inflamm Bowel Dis doi: 10.1002/ibd.21293 contributor: fullname: Haritunians – volume: 284 start-page: 24673 year: 2009 ident: B172 article-title: Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm publication-title: J Biol Chem doi: 10.1074/jbc.R109.022848 contributor: fullname: Martens – volume: 285 start-page: 9292 year: 2010 ident: B473 article-title: Deficiency in the nuclear factor E2-related factor-2 transcription factor results in impaired adipogenesis and protects against diet-induced obesity publication-title: J Biol Chem doi: 10.1074/jbc.M109.093955 contributor: fullname: Pi – volume: 72 start-page: 625 year: 2010 ident: B437 article-title: Mammalian Per-Arnt-Sim proteins in environmental adaptation publication-title: Annu Rev Physiol doi: 10.1146/annurev-physiol-021909-135922 contributor: fullname: McIntosh – volume: 98 start-page: 353 year: 1990 ident: B165 article-title: The degradation of amino acids, proteins, and blood to short-chain fatty acids in colon is prevented by lactulose publication-title: Gastroenterology doi: 10.1016/0016-5085(90)90825-L contributor: fullname: Mortensen – volume: 622 start-page: 103 year: 2007 ident: B314 article-title: Nutrigenomics applied to an animal model of Inflammatory Bowel Diseases: transcriptomic analysis of the effects of eicosapentaenoic acid-and arachidonic acid-enriched diets publication-title: Mutat Res doi: 10.1016/j.mrfmmm.2007.04.003 contributor: fullname: Roy – volume: 14 start-page: 309 year: 2006 ident: B109 article-title: Serum amyloid A: a marker of adiposity-induced low-grade inflammation but not of metabolic status publication-title: Obesity doi: 10.1038/oby.2006.40 contributor: fullname: Poitou – volume: 50 start-page: 23 year: 1981 ident: B168 article-title: Amino acid degradation by anaerobic bacteria publication-title: Annu Rev Biochem doi: 10.1146/annurev.bi.50.070181.000323 contributor: fullname: Barker – volume: 88 start-page: 168 year: 2015 ident: B456 article-title: Roles of NRF2 in cell proliferation and differentiation publication-title: Free Radic Biol Med doi: 10.1016/j.freeradbiomed.2015.06.030 contributor: fullname: Murakami – volume: 141 start-page: 227 year: 2011 ident: B289 article-title: Twin study indicates loss of interaction between microbiota and mucosa of patients with ulcerative colitis publication-title: Gastroenterology doi: 10.1053/j.gastro.2011.04.011 contributor: fullname: Lepage – start-page: 141 volume-title: Bioactive Sphingolipids in Cancer Biology and Therapy year: 2015 ident: B355 article-title: Colon cancer: the role of sphingolipid metabolic enzymes doi: 10.1007/978-3-319-20750-6_7 contributor: fullname: Furuya – volume: 91 start-page: 289 year: 2014 ident: B312 article-title: Partial replacement of dietary linoleic acid with long chain n-3 polyunsaturated fatty acids protects against dextran sulfate sodium-induced colitis in rats publication-title: Prostaglandins Leukot Essent Fatty Acids doi: 10.1016/j.plefa.2014.09.003 contributor: fullname: Tyagi – volume: 4 start-page: 2469 year: 2013 ident: B508 article-title: Human gut microbiota community structures in urban and rural populations in Russia publication-title: Nat Commun doi: 10.1038/ncomms3469 contributor: fullname: Tyakht – volume: 118 start-page: 724 year: 2000 ident: B235 article-title: The luminal short-chain fatty acid butyrate modulates NF-κB activity in a human colonic epithelial cell line publication-title: Gastroenterology doi: 10.1016/S0016-5085(00)70142-9 contributor: fullname: Inan – volume: 9 start-page: e1001221 year: 2011 ident: B613 article-title: Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts publication-title: PLoS Biol doi: 10.1371/journal.pbio.1001221 contributor: fullname: Martens – volume: 331 start-page: 337 year: 2011 ident: B63 article-title: Induction of colonic regulatory T cells by indigenous Clostridium species publication-title: Science doi: 10.1126/science.1198469 contributor: fullname: Atarashi – volume: 48 start-page: 519 year: 2005 ident: B111 article-title: Serum amyloid A: production by human white adipocyte and regulation by obesity and nutrition publication-title: Diabetologia doi: 10.1007/s00125-004-1654-6 contributor: fullname: Poitou – volume: 5 start-page: 3299 year: 2013 ident: B275 article-title: Docosahexaenoic acid, inflammation, and bacterial dysbiosis in relation to periodontal disease, inflammatory bowel disease, and the metabolic syndrome publication-title: Nutrients doi: 10.3390/nu5083299 contributor: fullname: Tabbaa – volume: 127 start-page: 412 year: 2004 ident: B65 article-title: High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn’s disease publication-title: Gastroenterology doi: 10.1053/j.gastro.2004.04.061 contributor: fullname: Darfeuille-Michaud – volume: 138 start-page: 1663 year: 2010 ident: B84 article-title: Targeting enteric neuroplasticity: diet and bugs as new key factors publication-title: Gastroenterology doi: 10.1053/j.gastro.2010.03.022 contributor: fullname: de Giorgio – volume: 46 start-page: 491 year: 2008 ident: B507 article-title: Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people publication-title: J Microbiol doi: 10.1007/s12275-008-0199-7 contributor: fullname: Nam – volume: 478 start-page: 197 year: 2011 ident: B430 article-title: An endogenous tumour-promoting ligand of the human aryl hydrocarbon receptor publication-title: Nature doi: 10.1038/nature10491 contributor: fullname: Opitz – volume: 239 start-page: G141 year: 1980 ident: B146 article-title: Portal venous transport of long-chain fatty acids absorbed from rat intestine publication-title: Am J Physiol contributor: fullname: McDonald – volume: 34 start-page: 147 year: 2000 ident: B390 article-title: Screening of sulfate-reducing bacteria in colonoscopy samples from healthy and colitic human gut mucosa publication-title: FEMS Microbiol Ecol doi: 10.1111/j.1574-6941.2000.tb00764.x contributor: fullname: Zinkevich – volume: 25 start-page: 2143 year: 2004 ident: B285 article-title: Marine n-3 fatty acid intake, glutathione S-transferase polymorphisms and breast cancer risk in post-menopausal Chinese women in Singapore publication-title: Carcinogenesis doi: 10.1093/carcin/bgh230 contributor: fullname: Gago-Dominguez – volume: 16 start-page: 1024 year: 2014 ident: B157 article-title: Defining dysbiosis and its influence on host immunity and disease publication-title: Cell Microbiol doi: 10.1111/cmi.12308 contributor: fullname: Petersen – volume: 11 start-page: 61 year: 2013 ident: B233 article-title: Bacteroides thetaiotaomicron and Faecalibacterium prausnitzii influence the production of mucus glycans and the development of goblet cells in the colonic epithelium of a gnotobiotic model rodent publication-title: BMC Biol doi: 10.1186/1741-7007-11-61 contributor: fullname: Wrzosek – volume: 279 start-page: 11320 year: 2004 ident: B361 article-title: Ceramide 1-phosphate is a direct activator of cytosolic phospholipase A2 publication-title: J Biol Chem doi: 10.1074/jbc.M309262200 contributor: fullname: Pettus – year: 2016 ident: B216 article-title: Metabolism meets immunity: the role of free fatty acid receptors in the immune system publication-title: Biochem Pharmacol doi: 10.1016/j.bcp.2016.03.017 contributor: fullname: Alvarez-Curto – volume: 102 start-page: 11070 year: 2005 ident: B93 article-title: Obesity alters gut microbial ecology publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.0504978102 contributor: fullname: Ley – volume: 117 start-page: 3909 year: 2007 ident: B589 article-title: Deletion of TLR5 results in spontaneous colitis in mice publication-title: J Clin Invest doi: 10.1172/JCI33084 contributor: fullname: Vijay-Kumar – volume: 257 start-page: 97 year: 2009 ident: B151 article-title: Induction of Foxp3+ regulatory T cells with histone deacetylase inhibitors publication-title: Cell Immunol doi: 10.1016/j.cellimm.2009.03.004 contributor: fullname: Lucas – volume: 22 start-page: 19 year: 2002 ident: B446 article-title: Dietary flavonoids: bioavailability, metabolic effects, and safety publication-title: Annu Rev Nutr doi: 10.1146/annurev.nutr.22.111401.144957 contributor: fullname: Ross – volume: 43 start-page: 3380 year: 2005 ident: B120 article-title: Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease publication-title: J Clin Microbiol doi: 10.1128/JCM.43.7.3380-3389.2005 contributor: fullname: Swidsinski – volume: 22 start-page: 66 year: 2012 ident: B476 article-title: Nrf2 redirects glucose and glutamine into anabolic pathways in metabolic reprogramming publication-title: Cancer Cell doi: 10.1016/j.ccr.2012.05.016 contributor: fullname: Mitsuishi – volume: 48 start-page: 2441 year: 2013 ident: B569 article-title: Dietary combination of potato resistant starch and red meat up-regulates genes involved in colonic barrier function of rats publication-title: Int J Food Sci Tech doi: 10.1111/ijfs.12208 contributor: fullname: Paturi – volume: 23 start-page: 69 year: 1984 ident: B142 article-title: Effect of unsaturated acids on membrane structure and enzyme kinetics publication-title: Prog Lipid Res doi: 10.1016/0163-7827(84)90008-0 contributor: fullname: Brenner – volume: 69 start-page: 245 year: 2011 ident: B189 article-title: Propionate as a health-promoting microbial metabolite in the human gut publication-title: Nutr Rev doi: 10.1111/j.1753-4887.2011.00388.x contributor: fullname: Hosseini – volume: 17 start-page: 1411 year: 2003 ident: B358 article-title: The sphingosine kinase 1/sphingosine-1-phosphate pathway mediates COX-2 induction and PGE2 production in response to TNF-alpha publication-title: FASEB J doi: 10.1096/fj.02-1038com contributor: fullname: Pettus – volume: 3 start-page: 390 year: 2006 ident: B3 article-title: Mechanisms of disease: pathogenesis of Crohn’s disease and ulcerative colitis publication-title: Nat Clinl Pract Gastroenterol Hepatol doi: 10.1038/ncpgasthep0528 contributor: fullname: Sartor – volume: 256 start-page: 225 year: 1992 ident: B9 article-title: Cloning and characterization of inducible nitric oxide synthase from mouse macrophages publication-title: Science doi: 10.1126/science.1373522 contributor: fullname: Xie – volume: 35 start-page: S35 year: 1994 ident: B82 article-title: Effects of short chain fatty acids on gut morphology and function publication-title: Gut doi: 10.1136/gut.35.1_Suppl.S35 contributor: fullname: Scheppach – volume: 420 start-page: 211 year: 2009 ident: B234 article-title: The regulation of intestinal mucin MUC2 expression by short-chain fatty acids: implications for epithelial protection publication-title: Biochem J doi: 10.1042/BJ20082222 contributor: fullname: Burger-van Paassen – volume: 39 start-page: 386 year: 2013 ident: B418 article-title: Group 3 innate lymphoid cells inhibit T-cell-mediated intestinal inflammation through aryl hydrocarbon receptor signaling and regulation of microflora publication-title: Immunity doi: 10.1016/j.immuni.2013.08.002 contributor: fullname: Qiu – volume: 17 start-page: 2566 year: 2011 ident: B79 article-title: SAMP1/YitFc mouse strain: a spontaneous model of Crohn’s disease-like ileitis publication-title: Inflamm Bowel Dis doi: 10.1002/ibd.21638 contributor: fullname: Pizarro – volume: 2016 start-page: 3827684 year: 2016 ident: B351 article-title: Fostering inflammatory bowel disease: sphingolipid strategies to join forces publication-title: Mediators Inflamm doi: 10.1155/2016/3827684 contributor: fullname: Abdel Hadi – volume: 28 start-page: 300 year: 2014 ident: B607 article-title: A mineral extract from red algae ameliorates chronic spontaneous colitis in IL-10 deficient mice in a mouse strain dependent manner publication-title: Phytother Res doi: 10.1002/ptr.4989 contributor: fullname: Aviello – volume: 30 start-page: 332 year: 2014 ident: B372 article-title: Bile acids and the gut microbiome publication-title: Curr Opin Gastroenterol doi: 10.1097/MOG.0000000000000057 contributor: fullname: Ridlon – volume: 3 start-page: 577 year: 2012 ident: B415 article-title: Aryl hydrocarbon receptor: a molecular link between postnatal lymphoid follicle formation and diet publication-title: Gut Microbes doi: 10.4161/gmic.21865 contributor: fullname: Kiss – volume: 73 start-page: 2333 year: 2007 ident: B323 article-title: Rapid screening method for analyzing the conjugated linoleic acid production capabilities of bacterial cultures publication-title: Appl Environ Microbiol doi: 10.1128/AEM.01855-06 contributor: fullname: Barrett – volume: 145 start-page: 745 year: 2011 ident: B236 article-title: NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis publication-title: Cell doi: 10.1016/j.cell.2011.04.022 contributor: fullname: Elinav – volume: 21 start-page: 267 year: 2014 ident: B80 article-title: Immunopathological characterization of selected mouse models of inflammatory bowel disease: comparison to human disease publication-title: Pathophysiology doi: 10.1016/j.pathophys.2014.05.002 contributor: fullname: Jones-Hall – volume: 301 start-page: G1004 year: 2011 ident: B543 article-title: Pretreatment with the probiotic VSL#3 delays transition from inflammation to dysplasia in a rat model of colitis-associated cancer publication-title: Am J Physiol Gastrointest Liver Physiol doi: 10.1152/ajpgi.00167.2011 contributor: fullname: Appleyard – volume: 15 start-page: 692 year: 2005 ident: B113 article-title: Changes in insulin resistance following bariatric surgery and the adipoinsular axis: role of the adipocytokines, leptin, adiponectin and resistin publication-title: Obes Surg doi: 10.1381/0960892053923789 contributor: fullname: Ballantyne – volume: 19 start-page: 576 year: 2013 ident: B501 article-title: Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis publication-title: Nat Med doi: 10.1038/nm.3145 contributor: fullname: Koeth – volume: 53 start-page: 399 year: 2013 ident: B400 article-title: Isozyme profile and tissue-origin of alkaline phosphatases in mouse serum publication-title: Bone doi: 10.1016/j.bone.2012.12.048 contributor: fullname: Linder – volume: 276 start-page: 42302 year: 2001 ident: B409 article-title: The Q-rich subdomain of the human Ah receptor transactivation domain is required for dioxin-mediated transcriptional activity publication-title: J Biol Chem doi: 10.1074/jbc.M104798200 contributor: fullname: Kumar – volume: 16 start-page: 807 year: 2003 ident: B452 article-title: Inhibitory aryl hydrocarbon receptor-estrogen receptor α cross-talk and mechanisms of action publication-title: Chem Res Toxicol doi: 10.1021/tx034036r contributor: fullname: Safe – volume: 7 start-page: 707 year: 2013 ident: B290 article-title: Microbiota conservation and BMI signatures in adult monozygotic twins publication-title: ISME J doi: 10.1038/ismej.2012.146 contributor: fullname: Tims – volume: 27 start-page: 243 year: 2006 ident: B156 article-title: Cellular expression of monocarboxylate transporters (MCT) in the digestive tract of the mouse, rat, and humans, with special reference to slc5a8 publication-title: Biomed Res doi: 10.2220/biomedres.27.243 contributor: fullname: Iwanaga – volume: 473 start-page: 113 year: 2000 ident: B341 article-title: Wortmannin inhibits activation of nuclear transcription factors NF-κB and activated protein-1 induced by lipopolysaccharide and phorbol ester publication-title: FEBS Lett doi: 10.1016/S0014-5793(00)01501-5 contributor: fullname: Manna – volume: 24 start-page: 313 year: 2014 ident: B615 article-title: Succinate: a metabolic signal in inflammation publication-title: Trends Cell Biol doi: 10.1016/j.tcb.2013.11.008 contributor: fullname: Mills – volume: 12 start-page: 21 year: 2001 ident: B144 article-title: Review: the role of omega 3 fatty acids in intestinal inflammation publication-title: J Nutr Biochem doi: 10.1016/S0955-2863(00)00141-8 contributor: fullname: Teitelbaum – volume: 10 start-page: e0143384 year: 2015 ident: B367 article-title: Sphingosine kinase 2 and ceramide transport as key targets of the natural flavonoid luteolin to induce apoptosis in colon cancer cells publication-title: PLoS One doi: 10.1371/journal.pone.0143384 contributor: fullname: Hadi – year: 2015 ident: B493 publication-title: Riboflavin Increases the Abundance of Faecalibacterium prausnitzii and Roseburia in Fecal Samples of Healthy Volunteers and Positively Affects the Overall Microbial Balance in the Gut contributor: fullname: Sadabad – volume: 7 start-page: e49138 year: 2012 ident: B181 article-title: Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn’s disease publication-title: PLoS One doi: 10.1371/journal.pone.0049138 contributor: fullname: Erickson – volume: 9 start-page: e97342 year: 2014 ident: B223 article-title: Identification of the porcine G protein-coupled receptor 41 and 43 genes and their expression pattern in different tissues and development stages publication-title: PLoS One doi: 10.1371/journal.pone.0097342 contributor: fullname: Li – volume: 27 start-page: 186 issue: 5 year: 2008 ident: B311 article-title: The effect of dietary oils on cecal microflora in experimental colitis in mice publication-title: Indian J Gastroenterol contributor: fullname: Hekmatdoost – volume: 77 start-page: 867 year: 2013 ident: B365 article-title: Dietary glucosylceramide enhances tight junction function in skin epidermis via induction of claudin-1 publication-title: Biosci Biotechnol Biochem doi: 10.1271/bbb.120874 contributor: fullname: Kawada – volume: 534 start-page: 259 year: 2016 ident: B41 article-title: Universality of human microbial dynamics publication-title: Nature doi: 10.1038/nature18301 contributor: fullname: Bashan – volume: 131 start-page: 934 year: 2006 ident: B117 article-title: Nonalcoholic fatty liver disease: cytokine-adipokine interplay and regulation of insulin resistance publication-title: Gastroenterology doi: 10.1053/j.gastro.2006.05.054 contributor: fullname: Tilg – volume: 36 start-page: 415 year: 2006 ident: B531 article-title: Cycling and early pregnant endometrium as a site of regulated expression of the vitamin D system publication-title: J Mol Endocrinol doi: 10.1677/jme.1.01946 contributor: fullname: Vigano – volume: 283 start-page: 10550 year: 2008 ident: B602 article-title: Toll-like receptor 4 mediates induction of the Bcl10-NFkappaB-interleukin-8 inflammatory pathway by carrageenan in human intestinal epithelial cells publication-title: J Biol Chem doi: 10.1074/jbc.M708833200 contributor: fullname: Bhattacharyya – volume: 11 start-page: 340 year: 2005 ident: B271 article-title: Dietary n-3 polyunsaturated fatty acids reduce disease and colonic proinflammatory cytokines in a mouse model of colitis publication-title: Inflamm Bowel Dis doi: 10.1097/01.MIB.0000164016.98913.7c contributor: fullname: Whiting – volume: 24 start-page: 1415 year: 2013 ident: B573 article-title: Benefits of polyphenols on gut microbiota and implications in human health publication-title: J Nutr Biochem doi: 10.1016/j.jnutbio.2013.05.001 contributor: fullname: Cardona – volume: 23 start-page: 7525 year: 2003 ident: B403 article-title: Accelerated fat absorption in intestinal alkaline phosphatase knockout mice publication-title: Mol Cell Biol doi: 10.1128/MCB.23.21.7525-7530.2003 contributor: fullname: Narisawa – volume: 17 start-page: 532 year: 2011 ident: B407 article-title: Intestinal alkaline phosphatase has beneficial effects in mouse models of chronic colitis publication-title: Inflamm Bowel Dis doi: 10.1002/ibd.21377 contributor: fullname: Ramasamy – volume: 65 start-page: 4799 year: 1999 ident: B86 article-title: Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut publication-title: Appl Environ Microbiol doi: 10.1128/AEM.65.11.4799-4807.1999 contributor: fullname: Suau – volume: 8 start-page: e76532 year: 2013 ident: B263 article-title: Altered colonic mucosal polyunsaturated fatty acid (PUFA) derived lipid mediators in ulcerative colitis: new insight into relationship with disease activity and pathophysiology publication-title: PLoS One doi: 10.1371/journal.pone.0076532 contributor: fullname: Masoodi – volume: 21 start-page: 843 year: 2001 ident: B392 article-title: The prebiotic properties of oligofructose at low intake levels publication-title: Nutr Res doi: 10.1016/S0271-5317(01)00284-6 contributor: fullname: Rao – volume: 21 start-page: 709 year: 2015 ident: B19 article-title: Influence of nutrient-derived metabolites on lymphocyte immunity publication-title: Nat Med doi: 10.1038/nm.3894 contributor: fullname: Veldhoen – volume: 155 start-page: 285 year: 2009 ident: B322 article-title: Mechanism of conjugated linoleic acid and vaccenic acid formation in human faecal suspensions and pure cultures of intestinal bacteria publication-title: Microbiology doi: 10.1099/mic.0.022921-0 contributor: fullname: McIntosh – volume: 31 start-page: 884 year: 2015 ident: B484 article-title: Oral supplementation with l-glutamine alters gut microbiota of obese and overweight adults: a pilot study publication-title: Nutrition doi: 10.1016/j.nut.2015.01.004 contributor: fullname: de Souza – volume: 5 start-page: 1 year: 2014 ident: B538 article-title: Impact of vitamin D on immune function: lessons learned from genome-wide analysis publication-title: Front Physiol doi: 10.3389/fphys.2014.00151 contributor: fullname: Chun – volume: 87 start-page: 5662 year: 2002 ident: B107 article-title: Differential regulation of adiponectin secretion from cultured human omental and subcutaneous adipocytes: effects of insulin and rosiglitazone publication-title: J Clin Endocrinol Metab doi: 10.1210/jc.2002-020635 contributor: fullname: Motoshima – volume: 69 start-page: 114 year: 2013 ident: B170 article-title: Re-print of “Intestinal luminal nitrogen metabolism: role of the gut microbiota and consequences for the host” publication-title: Pharmacol Res doi: 10.1016/j.phrs.2013.01.003 contributor: fullname: Davila – volume: 63 start-page: 1883 year: 2015 ident: B218 article-title: Modulation of peroxisome proliferator-activated receptor gamma (PPAR γ) by conjugated fatty acid in obesity and inflammatory bowel disease publication-title: J Agric Food Chem doi: 10.1021/jf505050c contributor: fullname: Yuan – volume: 154 start-page: 3552 year: 2013 ident: B222 article-title: GPR41/FFAR3 and GPR43/FFAR2 as cosensors for short-chain fatty acids in enteroendocrine cells vs FFAR3 in enteric neurons and FFAR2 in enteric leukocytes publication-title: Endocrinology doi: 10.1210/en.2013-1142 contributor: fullname: Nøhr – volume: 9 start-page: 137 year: 2013 ident: B455 article-title: New player on an old field; the keap1/Nrf2 pathway as a target for treatment of type 2 diabetes and metabolic syndrome publication-title: Curr Diabetes Rev doi: 10.2174/157339913805076490 contributor: fullname: Chartoumpekis – volume: 141 start-page: 1241 year: 2010 ident: B180 article-title: Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations publication-title: Cell doi: 10.1016/j.cell.2010.05.005 contributor: fullname: Sonnenburg – volume: 3 start-page: 289 year: 2012 ident: B196 article-title: Microbial degradation of complex carbohydrates in the gut publication-title: Gut Microbes doi: 10.4161/gmic.19897 contributor: fullname: Flint – volume: 267 start-page: 727 year: 1990 ident: B143 article-title: Inhibition of receptor-mediated calcium influx in T cells by unsaturated non-esterified fatty acids publication-title: Biochem J doi: 10.1042/bj2670727 contributor: fullname: Chow – volume: 15 start-page: 2556 year: 2001 ident: B342 article-title: Modulation of the expression of cyclooxygenase-2 by fatty acids mediated through toll-like receptor 4-derived signaling pathways publication-title: FASEB J doi: 10.1096/fj.01-0432com contributor: fullname: Hwang – volume: 6 start-page: 78 year: 2015 ident: B587 article-title: Deregulation of intestinal anti-microbial defense by the dietary additive, maltodextrin publication-title: Gut Microbes doi: 10.1080/19490976.2015.1005477 contributor: fullname: Nickerson – volume: 5 start-page: 1333 year: 2015 ident: B504 article-title: Archaeal lineages within the human microbiome: absent, rare or elusive? publication-title: Life doi: 10.3390/life5021333 contributor: fullname: Horz – volume: 29 start-page: 824 year: 2010 ident: B45 article-title: Abscisic acid ameliorates experimental IBD by downregulating cellular adhesion molecule expression and suppressing immune cell infiltration publication-title: Clin Nutr doi: 10.1016/j.clnu.2010.02.009 contributor: fullname: Guri – volume: 28 start-page: 718 year: 2008 ident: B616 article-title: Loss of the SdhB, but Not the SdhA, subunit of complex II triggers reactive oxygen species-dependent hypoxia-inducible factor activation and tumorigenesis publication-title: Mol Cell Biol doi: 10.1128/MCB.01338-07 contributor: fullname: Guzy – volume: 32 start-page: 174 year: 2000 ident: B397 article-title: The function of alkaline phosphatase in the liver: regulation of intrahepatic biliary epithelium secretory activities in the rat publication-title: Hepatology doi: 10.1053/jhep.2000.9078 contributor: fullname: Alvaro – volume: 66 start-page: 36 year: 2014 ident: B475 article-title: Regulation of Nrf2 – an update publication-title: Free Radic Biol Med doi: 10.1016/j.freeradbiomed.2013.02.008 contributor: fullname: Niture – volume: 2 start-page: 328 year: 2007 ident: B176 article-title: IgA response to symbiotic bacteria as a mediator of gut homeostasis publication-title: Cell Host Microbe doi: 10.1016/j.chom.2007.09.013 contributor: fullname: Peterson – volume: 31 start-page: 539 year: 1990 ident: B277 article-title: Dietary fish oil reduces progression of chronic inflammatory lesions in a rat model of granulomatous colitis publication-title: Gut doi: 10.1136/gut.31.5.539 contributor: fullname: Vilaseca – volume: 26 start-page: 7 year: 2014 ident: B490 article-title: MAITs, MR1 and vitamin B metabolites publication-title: Curr Opin Immunol doi: 10.1016/j.coi.2013.09.007 contributor: fullname: Birkinshaw – volume: 34 start-page: 423 year: 1981 ident: B487 article-title: Niacin-tryptophan relationships for evaluating niacin equivalents publication-title: Am J Clin Nutr doi: 10.1093/ajcn/34.3.423 contributor: fullname: Horwitt – volume: 3 start-page: 858 year: 2011 ident: B162 article-title: Regulation of inflammation by short chain fatty acids publication-title: Nutrients doi: 10.3390/nu3100858 contributor: fullname: Vinolo – volume: 17 start-page: 1201 year: 2011 ident: B178 article-title: Aberrant response to commensal Bacteroides thetaiotaomicron in Crohn’s disease: an ex vivo human organ culture study publication-title: Inflamm Bowel Dis doi: 10.1002/ibd.21501 contributor: fullname: Edwards – volume: 10 start-page: e0125091 year: 2015 ident: B324 article-title: Conjugated linoleic acid aupplementation under a high-fat diet modulates stomach protein expression and Iitestinal microbiota in adult mice publication-title: PLoS One doi: 10.1371/journal.pone.0125091 contributor: fullname: Chaplin – volume: 44 start-page: 3192 year: 2014 ident: B439 article-title: Microbiota control of a tryptophan–AhR pathway in disease tolerance to fungi publication-title: Eur J Immunol doi: 10.1002/eji.201344406 contributor: fullname: Romani – volume: 89 start-page: 106 year: 2009 ident: B481 article-title: Oral glutamine increases circulating glucagon-like peptide 1, glucagon, and insulin concentrations in lean, obese, and type 2 diabetic subjects publication-title: Am J Clin Nutr doi: 10.3945/ajcn.2008.26362 contributor: fullname: Greenfield – volume: 38 start-page: 581 year: 2013 ident: B517 article-title: Luminal bacteria recruit CD103 dendritic cells into the intestinal epithelium to sample bacterial antigens for presentation publication-title: Immunity doi: 10.1016/j.immuni.2013.01.009 contributor: fullname: Farache – volume: 76 start-page: 504 year: 2002 ident: B319 article-title: Bioconversion of vaccenic acid to conjugated linoleic acid in humans publication-title: Am J Clin Nutr doi: 10.1093/ajcn/76.3.504 contributor: fullname: Turpeinen – volume: 1851 start-page: 469 year: 2015 ident: B259 article-title: Marine omega-3 fatty acids and inflammatory processes: effects, mechanisms and clinical relevance publication-title: Biochim Biophys Acta doi: 10.1016/j.bbalip.2014.08.010 contributor: fullname: Calder – volume: 4 start-page: 232 year: 2010 ident: B280 article-title: Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice publication-title: ISME J doi: 10.1038/ismej.2009.112 contributor: fullname: Zhang – volume: 10 start-page: 856 year: 2002 ident: B621 article-title: Leptin is a hypoxia-inducible gene publication-title: Obes Res doi: 10.1038/oby.2002.116 contributor: fullname: Guerre-Millo – volume: 9 start-page: 1261 year: 2008 ident: B619 article-title: Triggering the succinate receptor GPR91 on dendritic cells enhances immunity publication-title: Nat Immunol doi: 10.1038/ni.1657 contributor: fullname: Rubic – volume: 262 start-page: 422 year: 2007 ident: B118 article-title: Regulation of inflammation-related genes in human adipose tissue publication-title: J Intern Med doi: 10.1111/j.1365-2796.2007.01851.x contributor: fullname: Clément – volume: 147 start-page: 629 year: 2011 ident: B416 article-title: Exogenous stimuli maintain intraepithelial lymphocytes via aryl hydrocarbon receptor activation publication-title: Cell doi: 10.1016/j.cell.2011.09.025 contributor: fullname: Li – volume: 80 start-page: 349 year: 1996 ident: B608 article-title: Digestive fates of soluble polysaccharides from marine macroalgae: involvement of the colonic microflora and physiological consequences for the host publication-title: J Appl Bacteriol doi: 10.1111/j.1365-2672.1996.tb03230.x contributor: fullname: Michel – volume: 4 start-page: 2384 year: 2013 ident: B387 article-title: Microbiome remodelling leads to inhibition of intestinal farnesoid X receptor signalling and decreased obesity publication-title: Nat Commun doi: 10.1038/ncomms3384 contributor: fullname: Li – volume: 29 start-page: 4783 year: 2015 ident: B49 article-title: Microgram amounts of abscisic acid in fruit extracts improve glucose tolerance and reduce insulinemia in rats and in humans publication-title: FASEB J doi: 10.1096/fj.15-277731 contributor: fullname: Magnone – volume: 87 start-page: S221 year: 2002 ident: B83 article-title: The immune-enhancing effects of dietary fibres and prebiotics publication-title: Br J Nutr doi: 10.1079/BJNBJN/2002541 contributor: fullname: Schley – volume: 281 start-page: 7324 year: 2006 ident: B350 article-title: Neutral ceramidase encoded by the Asah2 gene is essential for the intestinal degradation of sphingolipids publication-title: J Biol Chem doi: 10.1074/jbc.M508382200 contributor: fullname: Kono – volume: 5 start-page: 1226 year: 2010 ident: B252 article-title: Dietary oleic acid as a control fatty acid for polyunsaturated fatty acid intervention studies: a transcriptomics and proteomics investigation using interleukin-10 gene-deficient mice publication-title: Biotechnol J doi: 10.1002/biot.201000066 contributor: fullname: Knoch – volume: 342 start-page: 1243 year: 2013 ident: B520 article-title: Nonredundant function of soluble LTalpha3 produced by innate lymphoid cells in intestinal homeostasis publication-title: Science doi: 10.1126/science.1243364 contributor: fullname: Kruglov – volume: 98 start-page: 2944 year: 2013 ident: B536 article-title: Oral supplementation with probiotic L. reuteri NCIMB 30242 increases mean circulating 25-hydroxyvitamin D: a post hoc analysis of a randomized controlled trial publication-title: J Clin Endocrinol Metab doi: 10.1210/jc.2012-4262 contributor: fullname: Jones – volume: 13 start-page: 842 year: 2015 ident: B140 article-title: Bridging the gap between host immune response and intestinal dysbiosis in inflammatory bowel disease: does immunoglobulin A mark the spot? publication-title: Clin Gastroenterol Hepatol doi: 10.1016/j.cgh.2015.02.028 contributor: fullname: Shapiro – volume: 107 start-page: 135 year: 2002 ident: B250 article-title: Modulation of lipopolysaccharide-stimulated macrophage tumor necrosis factor-α production by ω-3 fatty acid is associated with differential cyclooxygenase-2 protein expression and is independent of interleukin-10 publication-title: J Surg Res doi: 10.1016/S0022-4804(02)96498-X contributor: fullname: Babcock – volume: 55 start-page: 1150 year: 2014 ident: B274 article-title: Dietary omega-3 fatty acids modulate the eicosanoid profile in man primarily via the CYP-epoxygenase pathway publication-title: J Lipid Res doi: 10.1194/jlr.M047357 contributor: fullname: Fischer – volume: 33 start-page: 351 year: 2015 ident: B388 article-title: Interactions between diet, bile acid metabolism, gut microbiota, and inflammatory bowel diseases publication-title: Dig Dis doi: 10.1159/000371687 contributor: fullname: Devkota – volume: 534 start-page: 182 year: 2016 ident: B40 article-title: Host-microbe interaction: rules of the game for microbiota publication-title: Nature doi: 10.1038/534182a contributor: fullname: Faust – volume: 206 start-page: 299 year: 2009 ident: B412 article-title: Th17 cells and IL-17 receptor signaling are essential for mucosal host defense against oral candidiasis publication-title: J Exp Med doi: 10.1084/jem.20081463 contributor: fullname: Conti – volume: 21 start-page: 717 year: 2010 ident: B580 article-title: Anti-inflammatory properties of a pomegranate extract and its metabolite urolithin-A in a colitis rat model and the effect of colon inflammation on phenolic metabolism publication-title: J Nutr Biochem doi: 10.1016/j.jnutbio.2009.04.012 contributor: fullname: Larrosa – start-page: 269 volume-title: Gastrointestinal Microbiology year: 1997 ident: B191 article-title: Carbohydrate fermentation, energy transduction and gas metabolism in the human large intestine doi: 10.1007/978-1-4615-4111-0_9 contributor: fullname: Macfarlane – volume: 491 start-page: 717 year: 2012 ident: B489 article-title: MR1 presents microbial vitamin B metabolites to MAIT cells publication-title: Nature doi: 10.1038/nature11605 contributor: fullname: Kjer-Nielsen – volume: 7 start-page: e42645 year: 2012 ident: B177 article-title: The colitis-associated transcriptional profile of commensal Bacteroides thetaiotaomicron enhances adaptive immune responses to a bacterial antigen publication-title: PLoS One doi: 10.1371/journal.pone.0042645 contributor: fullname: Hansen – volume: 23 start-page: 286 year: 2008 ident: B374 article-title: The role of FXR in disorders of bile acid homeostasis publication-title: Physiology (Bethesda) doi: 10.1152/physiol.00020.2008 contributor: fullname: Eloranta – volume: 34 start-page: 435 year: 2011 ident: B514 article-title: Essential role for retinoic acid in the promotion of CD4 T cell effector responses via retinoic acid receptor alpha publication-title: Immunity doi: 10.1016/j.immuni.2011.03.003 contributor: fullname: Hall – volume: 519 start-page: 92 year: 2015 ident: B590 article-title: Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome publication-title: Nature doi: 10.1038/nature14232 contributor: fullname: Chassaing – volume: 39 start-page: 372 year: 2013 ident: B421 article-title: Tryptophan catabolites from microbiota engage aryl hydrocarbon receptor and balance mucosal reactivity via interleukin-22 publication-title: Immunity doi: 10.1016/j.immuni.2013.08.003 contributor: fullname: Zelante – volume: 3 start-page: 417 year: 2008 ident: B54 article-title: Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases publication-title: Cell Host Microbe doi: 10.1016/j.chom.2008.05.001 contributor: fullname: Peterson – volume: 62 start-page: 101 year: 2003 ident: B207 article-title: Molecular analysis of the effect of short-chain fatty acids on intestinal cell proliferation publication-title: Proc Nutr Soc doi: 10.1079/PNS2002215 contributor: fullname: Blottiere – volume: 33 start-page: 319 year: 1977 ident: B173 article-title: Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon publication-title: Appl Environ Microbiol doi: 10.1128/aem.33.2.319-322.1977 contributor: fullname: Salyers – volume: 54 start-page: 1469 year: 2004 ident: B127 article-title: Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium publication-title: Int J Syst Evol Microbiol doi: 10.1099/ijs.0.02873-0 contributor: fullname: Derrien – volume: 8 start-page: 115 year: 2013 ident: B282 article-title: PTGS1, PTGS2, ALOX5, ALOX12, ALOX15, and FLAP SNPs: interaction with fatty acids in colon cancer and rectal cancer publication-title: Genes Nutr doi: 10.1007/s12263-012-0302-x contributor: fullname: Habermann – volume: 115 start-page: 2774 year: 2005 ident: B256 article-title: A role for docosahexaenoic acid-derived neuroprotectin D1 in neural cell survival and Alzheimer disease publication-title: J Clin Invest doi: 10.1172/JCI25420 contributor: fullname: Lukiw – volume: 46 start-page: 64 year: 2000 ident: B393 article-title: The contribution of sulphate reducing bacteria and 5-aminosalicylic acid to faecal sulphide in patients with ulcerative colitis publication-title: Gut doi: 10.1136/gut.46.1.64 contributor: fullname: Pitcher – start-page: 79 volume-title: Computational Modeling-Based Discovery of Novel Classes of Anti-Inflammatory Drugs that Target Lanthionine Synthetase C-Like Protein. Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology – Systems & Applications year: 2015 ident: B51 article-title: Phase III placebo-controlled, randomized clinical trial with synthetic Crohn’s disease patients to evaluate treatment response contributor: fullname: Abedi – volume: 6 start-page: e108 year: 2015 ident: B244 article-title: Butyrate and mucosal inflammation: new scientific evidence supports clinical observation publication-title: Clin Transl Gastroenterol doi: 10.1038/ctg.2015.34 contributor: fullname: Cushing – volume: 30 start-page: 149 year: 2009 ident: B221 article-title: Expression of short-chain fatty acid receptor GPR41 in the human colon publication-title: Biomed Res doi: 10.2220/biomedres.30.149 contributor: fullname: Tazoe – volume: 77 start-page: H216 year: 2012 ident: B568 article-title: Effects of potato fiber and potato-resistant starch on biomarkers of colonic health in rats fed diets containing red meat publication-title: J Food Sci doi: 10.1111/j.1750-3841.2012.02911.x contributor: fullname: Paturi – volume: 21 start-page: 1186 year: 2010 ident: B240 article-title: Butyrate reduced lipopolysaccharide-mediated macrophage migration by suppression of Src enhancement and focal adhesion kinase activity publication-title: J Nutr Biochem doi: 10.1016/j.jnutbio.2009.10.004 contributor: fullname: Maa – volume: 57 start-page: 845 year: 1989 ident: B427 article-title: Role of tryptophan degradation in respiratory burst-independent antimicrobial activity of gamma interferon-stimulated human macrophages publication-title: Infect Immun doi: 10.1128/iai.57.3.845-849.1989 contributor: fullname: Murray – volume: 101 start-page: 428 year: 1995 ident: B22 article-title: Altered Th1/Th2 cytokine profiles in the intestinal mucosa of patients with inflammatory bowel disease as assessed by quantitative reversed transcribed polymerase chain reaction (RT-PCR) publication-title: Clin Exp Immunol doi: 10.1111/j.1365-2249.1995.tb03130.x contributor: fullname: Niessner – volume: 2 start-page: S433 year: 1982 ident: B396 article-title: Bile acid-dependent secretion of alkaline phosphatase in rat bile publication-title: Hepatology doi: 10.1002/hep.1840020407 contributor: fullname: Hatoff – volume: 106 start-page: 563 year: 2011 ident: B145 article-title: Dietary intake and risk of developing inflammatory bowel disease: a systematic review of the literature publication-title: Am J Gastroenterol doi: 10.1038/ajg.2011.44 contributor: fullname: Hou – volume: 62 start-page: 71 year: 2001 ident: B464 article-title: Suppression of allergic immune responses to house dust mite (HDM) in rats exposed to 2,3,7,8-TCDD publication-title: Toxicol Sci doi: 10.1093/toxsci/62.1.71 contributor: fullname: Luebke – volume: 19 start-page: 2848 year: 2013 ident: B224 article-title: G protein-coupled receptor 43 moderates gut inflammation through cytokine regulation from mononuclear cells publication-title: Inflamm Bowel Dis doi: 10.1097/01.MIB.0000435444.14860.ea contributor: fullname: Masui – volume: 3 start-page: 448 year: 2012 ident: B186 article-title: Microbial pathways in colonic sulfur metabolism and links with health and disease publication-title: Front Physiol doi: 10.3389/fphys.2012.00448 contributor: fullname: Carbonero – volume: 7 start-page: 35 year: 2016 ident: B307 article-title: Microbial lipids as potential source to food supplements publication-title: Curr Opin Food Sci doi: 10.1016/j.cofs.2015.10.002 contributor: fullname: Béligon – volume-title: Handbook of Vitamins year: 2013 ident: B496 contributor: fullname: Anonymous – volume: 4 start-page: 382 year: 2013 ident: B380 article-title: Cirrhosis, bile acids and gut microbiota: unraveling a complex relationship publication-title: Gut Microbes doi: 10.4161/gmic.25723 contributor: fullname: Ridlon – volume: 31 start-page: 30 year: 2016 ident: B305 article-title: The antibacterial effect of fatty acids on Helicobacter pylori infection publication-title: Korean J Intern Med doi: 10.3904/kjim.2016.31.1.30 contributor: fullname: Jung – volume: 8 start-page: 639 year: 2009 ident: B547 article-title: Vitamin D: the alternative hypothesis publication-title: Autoimmun Rev doi: 10.1016/j.autrev.2009.02.011 contributor: fullname: Albert – volume: 37 start-page: 17 year: 2015 ident: B160 article-title: Commensal microbiota regulates T cell fate decision in the gut publication-title: Semin Immunopathol doi: 10.1007/s00281-014-0455-3 contributor: fullname: Furusawa – volume: 22 start-page: 78 year: 1972 ident: B192 article-title: Ruminococcus bromii sp. n. and emendation of the description of Ruminococcus Sijpestein publication-title: Int J Syst Bacteriol doi: 10.1099/00207713-22-2-78 contributor: fullname: Moore – volume: 52 start-page: 398 year: 2014 ident: B68 article-title: Increased proportions of Bifidobacterium and the Lactobacillus group and loss of butyrate-producing bacteria in inflammatory bowel disease publication-title: J Clin Microbiol doi: 10.1128/JCM.01500-13 contributor: fullname: Wang – volume: 63 start-page: 143 year: 2015 ident: B335 article-title: Toll-like receptor co-receptors as master regulators of the immune response publication-title: Mol Immunol doi: 10.1016/j.molimm.2014.05.008 contributor: fullname: Di Gioia – volume: 292 start-page: G829 year: 2007 ident: B601 article-title: Carrageenan induces interleukin-8 production through distinct Bcl10 pathway in normal human colonic epithelial cells publication-title: Am J Physiol Gastrointest Liver Physiol doi: 10.1152/ajpgi.00380.2006 contributor: fullname: Borthakur – volume: 3 start-page: 1120 year: 2012 ident: B343 article-title: MyD88 signalling in colonic mononuclear phagocytes drives colitis in IL-10-deficient mice publication-title: Nat Commun doi: 10.1038/ncomms2113 contributor: fullname: Hoshi – volume: 19 start-page: 1067 year: 2005 ident: B546 article-title: Human cathelicidin antimicrobial peptide (CAMP) gene is a direct target of the vitamin D receptor and is strongly up-regulated in myeloid cells by 1,25-dihydroxyvitamin D3 publication-title: FASEB J doi: 10.1096/fj.04-3284com contributor: fullname: Gombart – volume: 116 start-page: 1107 year: 1999 ident: B563 article-title: Lactobacillus species prevents colitis in interleukin 10 gene-deficient mice publication-title: Gastroenterology doi: 10.1016/S0016-5085(99)70013-2 contributor: fullname: Madsen – volume: 17 start-page: 56 year: 2011 ident: B512 article-title: Archaea as emerging organisms in complex human microbiomes publication-title: Anaerobe doi: 10.1016/j.anaerobe.2011.03.001 contributor: fullname: Dridi – volume: 60 start-page: 55 year: 2011 ident: B363 article-title: Sphingomyelin induces cathepsin D-mediated apoptosis in intestinal epithelial cells and increases inflammation in DSS colitis publication-title: Gut doi: 10.1136/gut.2009.201988 contributor: fullname: Fischbeck – volume: 1 start-page: 6ra14 year: 2009 ident: B100 article-title: The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice publication-title: Sci Transl Med doi: 10.1126/scitranslmed.3000322 contributor: fullname: Turnbaugh – volume: 43 start-page: 831 year: 2008 ident: B73 article-title: Fungi and inflammatory bowel diseases: alterations of composition and diversity publication-title: Scand J Gastroenterol doi: 10.1080/00365520801935434 contributor: fullname: Ott – volume: 299 start-page: 128 year: 2009 ident: B202 article-title: Lactate has the potential to promote hydrogen sulphide formation in the human colon publication-title: FEMS Microbiol Lett doi: 10.1111/j.1574-6968.2009.01750.x contributor: fullname: Marquet – volume: 56 start-page: 1005 year: 1998 ident: B499 article-title: Isoform specificity of trimethylamine N-oxygenation by human flavin-containing monooxygenase (FMO) and P450 enzymes: selective catalysis by FMO3 publication-title: Biochem Pharmacol doi: 10.1016/S0006-2952(98)00218-4 contributor: fullname: Lang – volume: 16 start-page: 976 year: 2009 ident: B24 article-title: Toll-like receptors in control of immunological autophagy publication-title: Cell Death Differ doi: 10.1038/cdd.2009.40 contributor: fullname: Delgado – volume: 7 start-page: 70 year: 2007 ident: B239 article-title: Anti-inflammatory effects of short chain fatty acids in IFN-γ-stimulated RAW 264.7 murine macrophage cells: involvement of NF-κB and ERK signaling pathways publication-title: Int Immunopharmacol doi: 10.1016/j.intimp.2006.08.015 contributor: fullname: Park – volume: 124 start-page: 307 year: 2014 ident: B362 article-title: The role of sphingolipids in arachidonic acid metabolism publication-title: J Pharmacol Sci doi: 10.1254/jphs.13R18CP contributor: fullname: Nakamura – volume: 284 start-page: 27384 year: 2009 ident: B331 article-title: Fatty acids modulate Toll-like receptor 4 activation through regulation of receptor dimerization and recruitment into lipid rafts in a reactive oxygen species-dependent manner publication-title: J Biol Chem doi: 10.1074/jbc.M109.044065 contributor: fullname: Wong – volume: 80 start-page: 666 year: 1981 ident: B395 article-title: Bile acids modify alkaline phosphatase induction and bile secretion pressure after bile duct obstruction in the rat publication-title: Gastroenterology doi: 10.1016/0016-5085(81)90123-2 contributor: fullname: Hatoff – volume: 60 start-page: 2775 year: 2011 ident: B128 article-title: Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice publication-title: Diabetes doi: 10.2337/db11-0227 contributor: fullname: Everard – volume: 42 start-page: 276 year: 1995 ident: B300 article-title: The effects of unsaturated fatty acids on Helicobacter pylori in vitro publication-title: J Med Microbiol doi: 10.1099/00222615-42-4-276 contributor: fullname: Khulusi – volume: 155 start-page: 801 year: 2014 ident: B584 article-title: Role of human gut microbiota metabolism in the anti-inflammatory effect of traditionally used ellagitannin-rich plant materials publication-title: J Ethnopharmacol doi: 10.1016/j.jep.2014.06.032 contributor: fullname: Piwowarski – volume: 5 start-page: e1213 year: 2014 ident: B43 article-title: Systems modeling of the role of interleukin-21 in the maintenance of effector CD4+ T cell responses during chronic Helicobacter pylori infection publication-title: MBio doi: 10.1128/mBio.01243-14 contributor: fullname: Carbo – volume: 38 start-page: 931 year: 2000 ident: B391 article-title: Bacteremia caused by a strain of Desulfovibrio related to the provisionally named Desulfovibrio fairfieldensis publication-title: J Clin Microbiol doi: 10.1128/JCM.38.2.931-934.2000 contributor: fullname: Loubinoux – volume: 8 start-page: 1323 year: 2014 ident: B206 article-title: Phylogenetic distribution of three pathways for propionate production within the human gut microbiota publication-title: ISME J doi: 10.1038/ismej.2014.14 contributor: fullname: Reichardt – volume: 39 start-page: 135 year: 2008 ident: B226 article-title: Expression of the short-chain fatty acid receptor, GPR43, in the human colon publication-title: J Mol Histol doi: 10.1007/s10735-007-9145-y contributor: fullname: Karaki – volume: 89 start-page: 1393 year: 2009 ident: B328 article-title: Metabolic activity of the enteric microbiota influences the fatty acid composition of murine and porcine liver and adipose tissues publication-title: Am J Clin Nutr doi: 10.3945/ajcn.2008.27023 contributor: fullname: Wall – volume: 289 start-page: G13 year: 2005 ident: B293 article-title: Intestinal responsiveness to experimental colitis in young rats is altered by maternal diet publication-title: Am J Physiol Gastrointest Liver Physiol doi: 10.1152/ajpgi.00459.2004 contributor: fullname: Jacobson – volume: 23 start-page: S8 year: 2010 ident: B246 article-title: Lipid emulsions in parenteral nutrition: does one size fits all? publication-title: SAJCN doi: 10.1080/16070658.2010.11734260 contributor: fullname: Laviano – volume: 28 start-page: 321 year: 2008 ident: B210 article-title: Butyrate and trichostatin A attenuate nuclear factor kappaB activation and tumor necrosis factor alpha secretion and increase prostaglandin E2 secretion in human peripheral blood mononuclear cells publication-title: Nutr Res doi: 10.1016/j.nutres.2008.02.012 contributor: fullname: Usami – volume: 444 start-page: 1027 year: 2006 ident: B95 article-title: An obesity-associated gut microbiome with increased capacity for energy harvest publication-title: Nature doi: 10.1038/nature05414 contributor: fullname: Turnbaugh – volume: 64 start-page: S27 year: 2006 ident: B247 article-title: Scientific evidence of interventions using the Mediterranean diet: a systematic review publication-title: Nutr Rev doi: 10.1301/nr.2006.feb.S27-S47 contributor: fullname: Serra-Majem – volume: 68 start-page: 3985 year: 2008 ident: B268 article-title: Reduced colitis-associated colon cancer in Fat-1 (n-3 fatty acid desaturase) transgenic mice publication-title: Cancer Res doi: 10.1158/0008-5472.CAN-07-6251 contributor: fullname: Jia – year: 2016 ident: B7 article-title: Dysbiosis in intestinal inflammation: cause or consequence publication-title: Int J Med Microbiol doi: 10.1016/j.ijmm.2016.02.010 contributor: fullname: Buttó – volume: 290 start-page: G377 year: 2006 ident: B398 article-title: On the role and fate of LPS-dephosphorylating activity in the rat liver publication-title: Am J Physiol Gastrointest Liver Physiol doi: 10.1152/ajpgi.00147.2005 contributor: fullname: Tuin – volume: 6 start-page: 492 year: 2015 ident: B567 article-title: Beneficial effects of soy milk and fiber on high cholesterol diet-induced alteration of gut microbiota and inflammatory gene expression in rats publication-title: Food Funct doi: 10.1039/c4fo00731j contributor: fullname: Lee – volume: 9 start-page: e1003027 year: 2013 ident: B52 article-title: Systems modeling of molecular mechanisms controlling cytokine-driven CD4 T cell differentiation and phenotype plasticity publication-title: PLoS Comput Biol doi: 10.1371/journal.pcbi.1003027 contributor: fullname: Carbo – volume: 1784 start-page: 1873 year: 2008 ident: B204 article-title: Acetogenesis and the Wood–Ljungdahl pathway of CO(2) fixation publication-title: Biochim Biophys Acta doi: 10.1016/j.bbapap.2008.08.012 contributor: fullname: Ragsdale – volume: 142 start-page: 117 year: 2012 ident: B266 article-title: Th17 cell accumulation is decreased during chronic experimental colitis by (n-3) PUFA in Fat-1 mice publication-title: J Nutr doi: 10.3945/jn.111.147058 contributor: fullname: Monk – volume: 72 start-page: 1729 year: 2006 ident: B386 article-title: Bile salt hydrolase activity in probiotics publication-title: Appl Environ Microbiol doi: 10.1128/AEM.72.3.1729-1738.2006 contributor: fullname: Begley – volume: 5 start-page: 5 year: 2014 ident: B503 article-title: Archaebiotics: proposed therapeutic use of archaea to prevent trimethylaminuria and cardiovascular disease publication-title: Gut Microbes doi: 10.4161/gmic.26749 contributor: fullname: Brugère – volume: 25 start-page: 466 year: 2006 ident: B574 article-title: Intestinal anti-inflammatory activity of combined quercitrin and dietary olive oil supplemented with fish oil, rich in EPA and DHA (n-3) polyunsaturated fatty acids, in rats with DSS-induced colitis publication-title: Clin Nutr doi: 10.1016/j.clnu.2005.12.009 contributor: fullname: Camuesco – volume: 45 start-page: 571 year: 2010 ident: B4 article-title: New pathophysiological insights and modern treatment of IBD publication-title: J Gastroenterol doi: 10.1007/s00535-010-0219-3 contributor: fullname: Engel – volume: 141 start-page: 1773 year: 2011 ident: B379 article-title: Bile acid is a host factor that regulates the composition of the cecal microbiota in rats publication-title: Gastroenterology doi: 10.1053/j.gastro.2011.07.046 contributor: fullname: Islam – volume: 14 start-page: 1166 year: 1999 ident: B346 article-title: Medium-chain triglycerides modulate ileitis induced by trinitrobenzene sulfonic acid publication-title: J Gastroenterol Hepatol doi: 10.1046/j.1440-1746.1999.02024.x contributor: fullname: Tsujikawa – volume: 36 start-page: 189 year: 2004 ident: B438 article-title: The mammalian basic helix–loop–helix/PAS family of transcriptional regulators publication-title: Int J Biochem Cell Biol doi: 10.1016/S1357-2725(03)00211-5 contributor: fullname: Kewley – volume: 4 start-page: 123 year: 2006 ident: B92 article-title: Stability of human methanogenic flora over 35 years and a review of insights obtained from breath methane measurements publication-title: Clin Gastroenterol Hepatol doi: 10.1016/j.cgh.2005.11.006 contributor: fullname: Levitt – volume: 18 start-page: 1657 year: 2004 ident: B108 article-title: Weight loss regulates inflammation-related genes in white adipose tissue of obese subjects publication-title: FASEB J doi: 10.1096/fj.04-2204com contributor: fullname: Clement – volume: 107 start-page: 8772 year: 2010 ident: B232 article-title: Peroxisome proliferator-activated receptor gamma activation is required for maintenance of innate antimicrobial immunity in the colon publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.0905745107 contributor: fullname: Peyrin-Biroulet – volume: 37 start-page: 287 issue: 5 year: 2016 ident: B137 article-title: Secretory IgA in the coordination of establishment and maintenance of the microbiota publication-title: Trends Immunol doi: 10.1016/j.it.2016.03.002 contributor: fullname: Pabst – volume: 133 start-page: S2068 year: 2003 ident: B478 article-title: Interorgan amino acid transport and its regulation publication-title: J Nutr doi: 10.1093/jn/133.6.2068S contributor: fullname: Brosnan – volume: 47 start-page: 241 year: 2006 ident: B370 article-title: Bile salt biotransformations by human intestinal bacteria publication-title: J Lipid Res doi: 10.1194/jlr.R500013-JLR200 contributor: fullname: Ridlon – volume: 2012 start-page: 6 year: 2012 ident: B606 article-title: Anti-inflammatory activity of Lactobacillus on carrageenan-induced paw edema in male wistar rats publication-title: Int J Inflam doi: 10.1155/2012/752015 contributor: fullname: Amdekar – volume: 411 start-page: 603 year: 2001 ident: B1 article-title: A frameshift mutation in NOD2 associated with susceptibility to Crohn’s disease publication-title: Nature doi: 10.1038/35079114 contributor: fullname: Ogura – volume: 76 start-page: 457 year: 2012 ident: B163 article-title: n-butyrate anergized effector CD4 T cells independent of regulatory T cell generation or activity publication-title: Scand J Immunol doi: 10.1111/j.1365-3083.2012.02740.x contributor: fullname: Fontenelle – volume: 20 start-page: 16062 year: 2014 ident: B505 article-title: Archaea and the human gut: new beginning of an old story publication-title: World J Gastroenterol doi: 10.3748/wjg.v20.i43.16062 contributor: fullname: Gaci – volume: 139 start-page: 603 year: 2009 ident: B344 article-title: Partial replacement of dietary (n-6) fatty acids with medium-chain triglycerides decreases the incidence of spontaneous colitis in interleukin-10-deficient mice publication-title: J Nutr doi: 10.3945/jn.108.101170 contributor: fullname: Mane – volume: 60 start-page: 940 year: 2014 ident: B377 article-title: Altered profile of human gut microbiome is associated with cirrhosis and its complications publication-title: J Hepatol doi: 10.1016/j.jhep.2013.12.019 contributor: fullname: Bajaj – volume: 53 start-page: 377 year: 2007 ident: B620 article-title: Inhibitory effect of succinic acid on epithelial cell proliferation of colonic mucosa in rats publication-title: J Nutr Sci Vitaminol doi: 10.3177/jnsv.53.377 contributor: fullname: Inagaki – volume: 464 start-page: 908 year: 2010 ident: B610 article-title: Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota publication-title: Nature doi: 10.1038/nature08937 contributor: fullname: Hehemann – volume: 15 start-page: 2559 year: 2009 ident: B283 article-title: Dietary omega-3 fatty acids, cyclooxygenase-2 genetic variation, and aggressive prostate cancer risk publication-title: Clin Cancer Res doi: 10.1158/1078-0432.CCR-08-2503 contributor: fullname: Fradet – volume: 105 start-page: 804 year: 2002 ident: B112 article-title: Reduction of inflammatory cytokine concentrations and improvement of endothelial functions in obese women after weight loss over one year publication-title: Circulation doi: 10.1161/hc0702.104279 contributor: fullname: Ziccardi – volume: 301 start-page: R1738 year: 2011 ident: B404 article-title: Interactions between CD36 and global intestinal alkaline phosphatase in mouse small intestine and effects of high-fat diet publication-title: Am J Physiol Regul Integr Comp Physiol doi: 10.1152/ajpregu.00235.2011 contributor: fullname: Lynes – volume: 70 start-page: 7960 year: 2010 ident: B308 article-title: Dietary fish oil alters T lymphocyte cell populations and exacerbates disease in a mouse model of inflammatory colitis publication-title: Cancer Res doi: 10.1158/0008-5472.CAN-10-1396 contributor: fullname: Woodworth – volume: 1822 start-page: 1300 year: 2012 ident: B599 article-title: Prolongation of carrageenan-induced inflammation in human colonic epithelial cells by activation of an NFκB-BCL10 loop publication-title: Biochim Biophys Acta doi: 10.1016/j.bbadis.2012.05.001 contributor: fullname: Borthakur – volume: 13 start-page: 1299 year: 2007 ident: B161 article-title: Deacetylase inhibition promotes the generation and function of regulatory T cells publication-title: Nat Med doi: 10.1038/nm1652 contributor: fullname: Tao – volume: 37 start-page: 996 year: 2015 ident: B557 article-title: Lack of vitamin D receptor causes dysbiosis and changes the functions of the murine intestinal microbiome publication-title: Clin Ther doi: 10.1016/j.clinthera.2015.04.004 contributor: fullname: Jin – volume: 299 start-page: 1057 year: 2003 ident: B26 article-title: Control of regulatory T cell development by the transcription factor Foxp3 publication-title: Science doi: 10.1126/science.1079490 contributor: fullname: Hori – volume: 40 start-page: 235 year: 2006 ident: B242 article-title: Colonic health: fermentation and short chain fatty acids publication-title: J Clin Gastroenterol doi: 10.1097/00004836-200603000-00015 contributor: fullname: Wong – volume: 504 start-page: 446 year: 2013 ident: B149 article-title: Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells publication-title: Nature doi: 10.1038/nature12721 contributor: fullname: Furusawa – volume: 2 start-page: 119 year: 2007 ident: B72 article-title: Host-mediated inflammation disrupts the intestinal microbiota and promotes the overgrowth of Enterobacteriaceae publication-title: Cell Host Microbe doi: 10.1016/j.chom.2007.06.010 contributor: fullname: Lupp – volume: 296 start-page: 1313 year: 2002 ident: B552 article-title: Vitamin D receptor as an intestinal bile acid sensor publication-title: Science doi: 10.1126/science.1070477 contributor: fullname: Makishima – volume: 50 start-page: 495 year: 2015 ident: B20 article-title: The microbiota in inflammatory bowel disease publication-title: J Gastroenterol doi: 10.1007/s00535-015-1064-1 contributor: fullname: Sheehan – volume: 80 start-page: S1717 year: 2004 ident: B523 article-title: Vitamin D status, 1, 25-dihydroxyvitamin D3, and the immune system publication-title: Am J Clin Nutr doi: 10.1093/ajcn/80.6.1717S contributor: fullname: Cantorna – volume: 235 start-page: 785 year: 2010 ident: B284 article-title: Genetic variants in the metabolism of omega-6 and omega-3 fatty acids: their role in the determination of nutritional requirements and chronic disease risk publication-title: Exp Biol Med (Maywood) doi: 10.1258/ebm.2010.009298 contributor: fullname: Simopoulos – volume: 18 start-page: 190 year: 2010 ident: B135 article-title: Microbiota and SCFA in lean and overweight healthy subjects publication-title: Obesity doi: 10.1038/oby.2009.167 contributor: fullname: Schwiertz – volume: 188 start-page: 1630 year: 2012 ident: B471 article-title: Th2 skewing by activation of Nrf2 in CD4(+) T cells publication-title: J Immunol doi: 10.4049/jimmunol.1101712 contributor: fullname: Rockwell – volume: 178 start-page: 93 year: 2007 ident: B479 article-title: Deficiency in glutamine but not glucose induces MYC-dependent apoptosis in human cells publication-title: J Cell Biol doi: 10.1083/jcb.200703099 contributor: fullname: Yuneva – volume: 12 start-page: 139 year: 2012 ident: B591 article-title: Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice publication-title: Cell Host Microbe doi: 10.1016/j.chom.2012.07.004 contributor: fullname: Carvalho – volume: 39 start-page: 1680 year: 2011 ident: B583 article-title: Colonic catabolism of ellagitannins, ellagic acid, and raspberry anthocyanins: in vivo and in vitro studies publication-title: Drug Metab Dispos doi: 10.1124/dmd.111.039651 contributor: fullname: Gonzalez-Barrio – volume: 95 start-page: 11 year: 1988 ident: B276 article-title: In vivo profiles of eicosanoids in ulcerative colitis, Crohn’s colitis, and Clostridium difficile colitis publication-title: Gastroenterology doi: 10.1016/0016-5085(88)90284-3 contributor: fullname: Lauritsen – volume: 17 start-page: 543 year: 2011 ident: B42 article-title: Molecular modeling of lanthionine synthetase component C-like protein 2: a potential target for the discovery of novel type 2 diabetes prophylactics and therapeutics publication-title: J Mol Model doi: 10.1007/s00894-010-0748-y contributor: fullname: Lu – volume: 588 start-page: 4102 year: 2014 ident: B11 article-title: Immune and genetic gardening of the intestinal microbiome publication-title: FEBS Lett doi: 10.1016/j.febslet.2014.02.052 contributor: fullname: Jacobs – volume: 103 start-page: 3920 year: 2006 ident: B384 article-title: Regulation of antibacterial defense in the small intestine by the nuclear bile acid receptor publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.0509592103 contributor: fullname: Inagaki – volume: 14 start-page: 1348 year: 2008 ident: B273 article-title: Omega-3 fatty acids exacerbate DSS-induced colitis through decreased adiponectin in colonic subepithelial myofibroblasts publication-title: Inflamm Bowel Dis doi: 10.1002/ibd.20491 contributor: fullname: Matsunaga – volume: 48 start-page: 190 year: 2013 ident: B334 article-title: Role of the Toll Like receptor (TLR) radical cycle in chronic inflammation: possible treatments targeting the TLR4 pathway publication-title: Mol Neurobiol doi: 10.1007/s12035-013-8425-7 contributor: fullname: Lucas – volume: 8 start-page: e55468 year: 2013 ident: B309 article-title: Fish oil attenuates omega-6 polyunsaturated fatty acid-induced dysbiosis and infectious colitis but impairs LPS dephosphorylation activity causing sepsis publication-title: PLoS One doi: 10.1371/journal.pone.0055468 contributor: fullname: Ghosh – volume: 34 start-page: 2842 year: 2013 ident: B578 article-title: Dietary black raspberries modulate DNA methylation in dextran sodium sulfate (DSS)-induced ulcerative colitis publication-title: Carcinogenesis doi: 10.1093/carcin/bgt310 contributor: fullname: Wang – volume: 19 start-page: 1099 year: 1978 ident: B483 article-title: Influence of inflammatory bowel disease on intestinal microflora publication-title: Gut doi: 10.1136/gut.19.12.1099 contributor: fullname: Keighley – volume: 13 start-page: R79 year: 2012 ident: B69 article-title: Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment publication-title: Genome Biol doi: 10.1186/gb-2012-13-9-r79 contributor: fullname: Morgan – volume: 20 start-page: 258 year: 2002 ident: B302 article-title: Bactericidal effects of fatty acids and monoglycerides on Helicobacter pylori publication-title: Int J Antimicrob Agents doi: 10.1016/S0924-8579(02)00205-4 contributor: fullname: Bergsson – volume: 6 start-page: Article555 year: 2015 ident: B139 article-title: Mechanisms of microbe–host interaction in Crohn’s disease: dysbiosis vs. pathobiont selection publication-title: Front Immunol doi: 10.3389/fimmu.2015.00555 contributor: fullname: Buttó – volume: 51 start-page: 1988 year: 2010 ident: B209 article-title: Acetate, the key modulator of inflammatory responses in acute alcoholic hepatitis publication-title: Hepatology doi: 10.1002/hep.23572 contributor: fullname: Kendrick – volume: 88 start-page: 9543 year: 1991 ident: B440 article-title: Aromatic hydrocarbon responsiveness-receptor agonists generated from indole-3-carbinol in vitro and in vivo: comparisons with 2,3,7,8-tetrachlorodibenzo-p-dioxin publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.88.21.9543 contributor: fullname: Bjeldanes – volume: 74 start-page: 1166 year: 2014 ident: B214 article-title: The niacin/butyrate receptor GPR109A suppresses mammary tumorigenesis by inhibiting cell survival publication-title: Cancer Res doi: 10.1158/0008-5472.CAN-13-1451 contributor: fullname: Elangovan – volume: 21 start-page: 1153 year: 2010 ident: B549 article-title: Curcumin: a novel nutritionally derived ligand of the vitamin D receptor with implications for colon cancer chemoprevention publication-title: J Nutr Biochem doi: 10.1016/j.jnutbio.2009.09.012 contributor: fullname: Bartik – volume: 1 start-page: 488 year: 2000 ident: B417 article-title: /IL-22: genomic organization and mapping of the human and mouse genes publication-title: Genes Immun doi: 10.1038/sj.gene.6363716 contributor: fullname: Dumoutier – volume: 110 start-page: 9066 year: 2013 ident: B129 article-title: Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.1219451110 contributor: fullname: Everard – volume: 73 start-page: 1412 year: 2007 ident: B431 article-title: Rosmarinic acid inhibits indoleamine 2, 3-dioxygenase expression in murine dendritic cells publication-title: Biochem Pharmacol doi: 10.1016/j.bcp.2006.12.018 contributor: fullname: Lee – volume: 6 start-page: 1535 year: 2012 ident: B175 article-title: Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon publication-title: ISME J doi: 10.1038/ismej.2012.4 contributor: fullname: Ze – volume: 30 start-page: 531 year: 2012 ident: B64 article-title: Regulatory T cells: mechanisms of differentiation and function publication-title: Annu Rev Immunol doi: 10.1146/annurev.immunol.25.022106.141623 contributor: fullname: Josefowicz – volume: 129 start-page: 1239 year: 1999 ident: B348 article-title: Sphingolipids in food and the emerging importance of sphingolipids to nutrition publication-title: J Nutr doi: 10.1093/jn/129.7.1239 contributor: fullname: Vesper – volume: 66 start-page: 5157 year: 1998 ident: B593 article-title: Helicobacter hepaticus triggers colitis in specific-pathogen-free interleukin-10 (IL-10)-deficient mice through an IL-12-and gamma interferon-dependent mechanism publication-title: Infect Immun doi: 10.1128/IAI.66.11.5157-5166.1998 contributor: fullname: Kullberg – volume: 6 start-page: e02481 year: 2015 ident: B502 article-title: Intestinal microbiota composition modulates choline bioavailability from diet and accumulation of the proatherogenic metabolite trimethylamine-N-oxide publication-title: MBio doi: 10.1128/mBio.02481-14 contributor: fullname: Romano – volume: 276 start-page: 6497 year: 2009 ident: B545 article-title: Multifunctional host defense peptides: antimicrobial peptides, the small yet big players in innate and adaptive immunity publication-title: FEBS J doi: 10.1111/j.1742-4658.2009.07360.x contributor: fullname: Auvynet – volume: 18 start-page: 2263 year: 2011 ident: B432 article-title: The interplay between indoleamine 2, 3-dioxygenase 1 (IDO1) and cyclooxygenase (COX)-2 in chronic inflammation and cancer publication-title: Curr Med Chem doi: 10.2174/092986711795656063 contributor: fullname: Cesario – volume: 60 start-page: 6728 year: 2012 ident: B554 article-title: Influence of dietary phytochemicals and microbiota on colon cancer risk publication-title: J Agric Food Chem doi: 10.1021/jf204230r contributor: fullname: MacDonald – volume: 11 start-page: 33 year: 2010 ident: B238 article-title: Histone deacetylase inhibitor, butyrate, attenuates lipopolysaccharide-induced acute lung injury in mice publication-title: Respir Res doi: 10.1186/1465-9921-11-33 contributor: fullname: Ni – volume: 116 start-page: 1 year: 2015 ident: B262 article-title: Prostaglandin E 2 switches from a stimulator to an inhibitor of cell migration after epithelial-to-mesenchymal transition publication-title: Prostaglandins Other Lipid Mediat doi: 10.1016/j.prostaglandins.2014.10.003 contributor: fullname: Li – year: 2016 ident: B306 article-title: Bifidobacterially produced, C18: 3 and C18: 4 conjugated fatty acids exhibit in vitro anti-carcinogenic and anti-microbial activity publication-title: Eur J Lipid Sci Technol doi: 10.1002/ejlt.201500424 contributor: fullname: Hennessy – volume: 20 start-page: 16079 year: 2014 ident: B123 article-title: Gut microbiota and metabolic syndrome publication-title: World J Gastroenterol doi: 10.3748/wjg.v20.i43.16079 contributor: fullname: Festi – volume: 196 start-page: 3289 year: 2014 ident: B494 article-title: Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe publication-title: J Bacteriol doi: 10.1128/JB.01780-14 contributor: fullname: Heinken – volume: 146 start-page: 772 year: 2011 ident: B618 article-title: Control of T(H)17/T(reg) balance by hypoxia-inducible factor 1 publication-title: Cell doi: 10.1016/j.cell.2011.07.033 contributor: fullname: Dang – volume: 104 start-page: 218 year: 2008 ident: B469 article-title: Genetic or pharmacologic amplification of nrf2 signaling inhibits acute inflammatory liver injury in mice publication-title: Toxicol Sci doi: 10.1093/toxsci/kfn079 contributor: fullname: Osburn – volume: 285 start-page: 14486 year: 2010 ident: B553 article-title: Regulation of bile acid synthesis by fat-soluble vitamins A and D publication-title: J Biol Chem doi: 10.1074/jbc.M110.116004 contributor: fullname: Schmidt – volume: 24 start-page: 179 year: 2006 ident: B30 article-title: β in the context of an inflammatory cytokine milieu supports de novo differentiation of IL-17-producing T cells publication-title: Immunity doi: 10.1016/j.immuni.2006.01.001 contributor: fullname: Veldhoen – volume: 89 start-page: 379 year: 2013 ident: B6 article-title: Immunomodulation by dietary long chain omega-3 fatty acids and the potential for adverse health outcomes publication-title: Prostaglandins Leukot Essent Fatty Acids doi: 10.1016/j.plefa.2013.09.011 contributor: fullname: Fenton – volume: 5 start-page: 220 year: 2011 ident: B89 article-title: Dominant and diet-responsive groups of bacteria within the human colonic microbiota publication-title: ISME J doi: 10.1038/ismej.2010.118 contributor: fullname: Walker – volume: 44 start-page: 479 year: 2003 ident: B332 article-title: Differential modulation of Toll-like receptors by fatty acids: preferential inhibition by n-3 polyunsaturated fatty acids publication-title: J Lipid Res doi: 10.1194/jlr.M200361-JLR200 contributor: fullname: Lee – volume: 11 start-page: 8 year: 2014 ident: B336 article-title: CD36: linking lipids to the NLRP3 inflammasome, atherogenesis and atherothrombosis publication-title: Cell Mol Immunol doi: 10.1038/cmi.2013.48 contributor: fullname: Oury – volume: 2013 start-page: 13 year: 2013 ident: B605 article-title: Carrageenan-induced colonic inflammation is reduced in Bcl10 null mice and increased in IL-10-deficient mice publication-title: Mediators Inflamm doi: 10.1155/2013/397642 contributor: fullname: Bhattacharyya – volume: 15 start-page: 872 year: 2009 ident: B67 article-title: Molecular diversity of Escherichia coli in the human gut: new ecological evidence supporting the role of adherent-invasive E. coli (AIEC) in Crohn’s disease publication-title: Inflamm Bowel Dis doi: 10.1002/ibd.20860 contributor: fullname: Martinez-Medina – volume: 9 start-page: 1570 year: 2014 ident: B292 article-title: Epigenome-wide analysis of neonatal CD4 T-cell DNA methylation sites potentially affected by maternal fish oil supplementation publication-title: Epigenetics doi: 10.4161/15592294.2014.983366 contributor: fullname: Amarasekera – volume: 25 start-page: 1419 year: 2006 ident: B373 article-title: Endocrine functions of bile acids publication-title: EMBO J doi: 10.1038/sj.emboj.7601049 contributor: fullname: Houten – volume: 29 start-page: 625 year: 2005 ident: B383 article-title: The interaction between bacteria and bile publication-title: FEMS Microbiol Rev doi: 10.1016/j.femsre.2004.09.003 contributor: fullname: Begley – volume: 13 start-page: 321 year: 2013 ident: B153 article-title: Role of the gut microbiota in immunity and inflammatory disease publication-title: Nat Rev Immunol doi: 10.1038/nri3430 contributor: fullname: Kamada – volume: 508 start-page: 123 year: 2014 ident: B519 article-title: Maternal retinoids control type 3 innate lymphoid cells and set the offspring immunity publication-title: Nature doi: 10.1038/nature13158 contributor: fullname: van de Pavert – volume: 24 start-page: 1019 year: 2013 ident: B48 article-title: Dietary abscisic acid ameliorates influenza-virus-associated disease and pulmonary immunopathology through a PPARγ-dependent mechanism publication-title: J Nutr Biochem doi: 10.1016/j.jnutbio.2012.07.010 contributor: fullname: Hontecillas – volume: 60 start-page: 5749 year: 2011 ident: B585 article-title: Strawberry processing does not affect the production and urinary excretion of urolithins, ellagic acid metabolites, in humans publication-title: J Agric Food Chem doi: 10.1021/jf203641r contributor: fullname: Truchado – volume: 63 start-page: 727 year: 2014 ident: B130 article-title: An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice publication-title: Gut doi: 10.1136/gutjnl-2012-303839 contributor: fullname: Shin – volume: 137 start-page: 200S issue: 1 Suppl year: 2007 ident: B310 article-title: Immunomodulatory effects of (n-3) fatty acids: putative link to inflammation and colon cancer publication-title: J Nutr doi: 10.1093/jn/137.1.200S contributor: fullname: Chapkin – volume: 448 start-page: 480 year: 2007 ident: B29 article-title: Essential autocrine regulation by IL-21 in the generation of inflammatory T cells publication-title: Nature doi: 10.1038/nature05969 contributor: fullname: Nurieva – volume: 106 start-page: 5859 year: 2009 ident: B195 article-title: Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.0901529106 contributor: fullname: Mahowald – volume: 56 start-page: 197 year: 1998 ident: B447 article-title: Effect of curcumin on the aryl hydrocarbon receptor and cytochrome P450 1A1 in MCF-7 human breast carcinoma cells publication-title: Biochem Pharmacol doi: 10.1016/S0006-2952(98)00143-9 contributor: fullname: Ciolino – volume: 121 start-page: 112 year: 2010 ident: B597 article-title: Peeling, drying temperatures, and sulphite-treatment affect physicochemical properties and nutritional quality of sweet potato flour publication-title: Food Chem doi: 10.1016/j.foodchem.2009.12.015 contributor: fullname: Ahmed – volume: 36 start-page: 471 year: 2004 ident: B12 article-title: Functional variants of OCTN cation transporter genes are associated with Crohn disease publication-title: Nat Genet doi: 10.1038/ng1339 contributor: fullname: Peltekova – volume: 46 start-page: 493 year: 2000 ident: B241 article-title: Butyrate and glucose metabolism by colonocytes in experimental colitis in mice publication-title: Gut doi: 10.1136/gut.46.4.493 contributor: fullname: Ahmad – volume: 70 start-page: 345 year: 2009 ident: B540 article-title: Dendritic cell tolerogenicity: a key mechanism in immunomodulation by vitamin D receptor agonists publication-title: Hum Immunol doi: 10.1016/j.humimm.2009.01.016 contributor: fullname: Adorini – volume: 9 start-page: e114934 year: 2014 ident: B521 article-title: Vitamin A supplementation in early life enhances the intestinal immune response of rats with gestational vitamin A deficiency by increasing the number of immune cells publication-title: PLoS One doi: 10.1371/journal.pone.0114934 contributor: fullname: Liu – volume: 6 start-page: 505 year: 2010 ident: B534 article-title: Vitamin D, NOD2, autophagy and Crohn’s disease publication-title: Expert Rev Clin Immunol doi: 10.1586/eci.10.31 contributor: fullname: Verway – volume: 106 start-page: 2365 year: 2009 ident: B94 article-title: Human gut microbiota in obesity and after gastric bypass publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.0812600106 contributor: fullname: Zhang – volume: 16 start-page: 453 year: 2013 ident: B187 article-title: Carbohydrates and the human gut microbiota publication-title: Curr Opin Clin Nutr Metab Care doi: 10.1097/MCO.0b013e3283619e63 contributor: fullname: Chassard – volume: 7 start-page: 740 year: 2015 ident: B37 article-title: Multiscale analysis of the murine intestine for modeling human diseases publication-title: Integr Biol doi: 10.1039/c5ib00030k contributor: fullname: Lyons – volume: 148 start-page: 179 year: 2015 ident: B529 article-title: Critical roles of intestinal epithelial vitamin D receptor signaling in controlling gut mucosal inflammation publication-title: J Steroid Biochem Mol Biol doi: 10.1016/j.jsbmb.2015.01.011 contributor: fullname: Li – volume: 2 start-page: 31 year: 2014 ident: B32 article-title: Computational modeling of heterogeneity and function of CD4 T cells publication-title: Front Cell Dev Biol doi: 10.3389/fcell.2014.00031 contributor: fullname: Carbo – volume: 68 start-page: 330 year: 2005 ident: B356 article-title: The coordination of prostaglandin E2 production by sphingosine-1-phosphate and ceramide-1-phosphate publication-title: Mol Pharmacol doi: 10.1124/mol.104.008722 contributor: fullname: Pettus – volume: 143 start-page: 1679 year: 2013 ident: B555 article-title: Vitamin D regulates the gut microbiome and protects mice from dextran sodium sulfate-induced colitis publication-title: J Nutr doi: 10.3945/jn.113.180794 contributor: fullname: Ooi – volume: 60 start-page: 907 year: 2005 ident: B462 article-title: T cell-derived IL-5 production is a sensitive target of 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD) publication-title: Chemosphere doi: 10.1016/j.chemosphere.2005.01.014 contributor: fullname: Inouye – volume: 512 start-page: 387 year: 2014 ident: B449 article-title: AhR sensing of bacterial pigments regulates antibacterial defence publication-title: Nature doi: 10.1038/nature13684 contributor: fullname: Moura-Alves – volume: 269 start-page: 307 year: 2013 ident: B477 article-title: Benzo [a] pyrene affects Jurkat T cells in the activated state via the antioxidant response element dependent Nrf2 pathway leading to decreased IL-2 secretion and redirecting glutamine metabolism publication-title: Toxicol Appl Pharmacol doi: 10.1016/j.taap.2013.03.032 contributor: fullname: Murugaiyan – volume: 10 start-page: 482 year: 2010 ident: B541 article-title: Vitamin D: modulator of the immune system publication-title: Curr Opin Pharmacol doi: 10.1016/j.coph.2010.04.001 contributor: fullname: Baeke – volume: 15 start-page: 653 year: 2009 ident: B59 article-title: Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn’s disease publication-title: Inflamm Bowel Dis doi: 10.1002/ibd.20783 contributor: fullname: Willing – volume: 175 start-page: 7348 year: 2005 ident: B465 article-title: Effects of aryl hydrocarbon receptor signaling on the modulation of TH1/TH2 balance publication-title: J Immunol doi: 10.4049/jimmunol.175.11.7348 contributor: fullname: Negishi – volume: 1761 start-page: 736 year: 2006 ident: B327 article-title: Human originated bacteria, Lactobacillus rhamnosus PL60, produce conjugated linoleic acid and show anti-obesity effects in diet-induced obese mice publication-title: Biochim Biophys Acta doi: 10.1016/j.bbalip.2006.05.007 contributor: fullname: Lee – volume: 141 start-page: 1135 year: 2010 ident: B76 article-title: Virus-plus-susceptibility gene interaction determines Crohn’s disease gene Atg16L1 phenotypes in intestine publication-title: Cell doi: 10.1016/j.cell.2010.05.009 contributor: fullname: Cadwell – volume: 52 start-page: 237 year: 2003 ident: B559 article-title: Alterations of the dominant faecal bacterial groups in patients with Crohn’s disease of the colon publication-title: Gut doi: 10.1136/gut.52.2.237 contributor: fullname: Seksik – volume: 151 start-page: 1163 year: 1997 ident: B399 article-title: Dephosphorylation of endotoxin by alkaline phosphatase in vivo publication-title: Am J Pathol contributor: fullname: Poelstra – volume: 299 start-page: G1376 year: 2010 ident: B296 article-title: Perinatal lipid nutrition alters early intestinal development and programs the response to experimental colitis in young adult rats publication-title: Am J Physiol Gastrointest Liver Physiol doi: 10.1152/ajpgi.00258.2010 contributor: fullname: Innis – volume: 77 start-page: 1 year: 2000 ident: B316 article-title: Biosynthesis of conjugated linoleic acid in ruminants publication-title: J Anim Sci doi: 10.2134/jas2000.77E-Suppl1f contributor: fullname: Bauman – volume-title: Sphingolipid-Mediated Signal Transduction year: 2013 ident: B354 contributor: fullname: Hannun – volume: 6 start-page: e22978 year: 2011 ident: B564 article-title: Probiotics modulate intestinal expression of nuclear receptor and provide counter-regulatory signals to inflammation-driven adipose tissue activation publication-title: PLoS One doi: 10.1371/journal.pone.0022978 contributor: fullname: Mencarelli – volume: 320 start-page: 1647 year: 2008 ident: B88 article-title: Evolution of mammals and their gut microbes publication-title: Science doi: 10.1126/science.1155725 contributor: fullname: Ley – volume: 56 start-page: 2437 year: 2006 ident: B200 article-title: Proposal of Roseburia faecis sp. nov., Roseburia hominis sp. nov. and Roseburia inulinivorans sp. nov., based on isolates from human faeces publication-title: Int J Syst Evol Microbiol doi: 10.1099/ijs.0.64098-0 contributor: fullname: Duncan – volume: 23 start-page: 202 issue: 3 year: 2011 ident: B33 article-title: Type 1 regulatory T cells (Tr1) in autoimmunity publication-title: Semin Immunol doi: 10.1016/j.smim.2011.07.005 contributor: fullname: Pot – volume: 25 start-page: 1 year: 1981 ident: B385 article-title: Deconjugation of bile salts by Bacteroides and Clostridium publication-title: Microbiol Immunol doi: 10.1111/j.1348-0421.1981.tb00001.x contributor: fullname: Masuda – volume: 38 start-page: 1738 year: 2013 ident: B565 article-title: Effects of Lactobacillus helveticus on murine behavior are dependent on diet and genotype and correlate with alterations in the gut microbiome publication-title: Psychoneuroendocrinology doi: 10.1016/j.psyneuen.2013.02.008 contributor: fullname: Ohland – volume: 54 start-page: 325 year: 2015 ident: B575 article-title: Interaction of dietary compounds, especially polyphenols, with the intestinal microbiota: a review publication-title: Eur J Nutr doi: 10.1007/s00394-015-0852-y contributor: fullname: Duda-Chodak – volume: 28 start-page: 1991 year: 2007 ident: B267 article-title: Colitis-associated colon tumorigenesis is suppressed in transgenic mice rich in endogenous n-3 fatty acids publication-title: Carcinogenesis doi: 10.1093/carcin/bgm166 contributor: fullname: Nowak – volume: 6 start-page: 24 year: 2015 ident: B294 article-title: Maternal exposure to fish oil primes offspring to harbor intestinal pathobionts associated with altered immune cell balance publication-title: Gut Microbes doi: 10.1080/19490976.2014.997610 contributor: fullname: Gibson – volume: 7 start-page: 2930 year: 2015 ident: B164 article-title: The role of microbial amino acid metabolism in host metabolism publication-title: Nutrients doi: 10.3390/nu7042930 contributor: fullname: Neis – volume: 4 start-page: 112 year: 2013 ident: B245 article-title: Fatty acid composition of edible oils and fats publication-title: J Hyg Eng Des contributor: fullname: Kostik – volume: 491 start-page: 119 year: 2012 ident: B18 article-title: Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease publication-title: Nature doi: 10.1038/nature11582 contributor: fullname: Jostins – volume: 1 start-page: 645 year: 2009 ident: B433 article-title: Targeting the immunoregulatory indoleamine 2, 3 dioxygenase pathway in immunotherapy publication-title: Immunotherapy doi: 10.2217/IMT.09.21 contributor: fullname: Johnson – volume: 6 start-page: 148 year: 2015 ident: B486 article-title: Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes publication-title: Front Genet doi: 10.3389/fgene.2015.00148 contributor: fullname: Magnusdottir – volume: 39 start-page: 207 year: 2006 ident: B13 article-title: A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1 publication-title: Nat Genet doi: 10.1038/ng1954 contributor: fullname: Hampe – volume: 16 start-page: 474 year: 2005 ident: B617 article-title: Reactive oxygen species in the control of hypoxia-inducible factor-mediated gene expression publication-title: Semin Cell Dev Biol doi: 10.1016/j.semcdb.2005.03.010 contributor: fullname: Kietzmann – volume: 60 start-page: 1050 year: 2011 ident: B535 article-title: Anti-inflammatory capacity of selected lactobacilli in experimental colitis is driven by NOD2-mediated recognition of a specific peptidoglycan-derived muropeptide publication-title: Gut doi: 10.1136/gut.2010.232918 contributor: fullname: Macho Fernandez – volume: 52 start-page: 446 year: 2013 ident: B337 article-title: Postprandial lipoproteins and the molecular regulation of vascular homeostasis publication-title: Prog Lipid Res doi: 10.1016/j.plipres.2013.06.001 contributor: fullname: Botham – volume: 55 start-page: 887 year: 1993 ident: B511 article-title: Breath hydrogen and methane in populations at different risk for colon cancer publication-title: Int J Cancer doi: 10.1002/ijc.2910550603 contributor: fullname: Marchand – volume: 58 start-page: 949 year: 2013 ident: B376 article-title: Modulation of the fecal bile acid profile by gut microbiota in cirrhosis publication-title: J Hepatol doi: 10.1016/j.jhep.2013.01.003 contributor: fullname: Kakiyama – volume: 2011 start-page: 923250 year: 2011 ident: B453 article-title: The role of aryl hydrocarbon receptor and crosstalk with estrogen receptor in response of breast cancer cells to the novel antitumor agents benzothiazoles and aminoflavone publication-title: Int J Breast Cancer doi: 10.4061/2011/923250 contributor: fullname: Callero – volume: 496 start-page: 238 year: 2013 ident: B614 article-title: Succinate is an inflammatory signal that induces IL-1beta through HIF-1alpha publication-title: Nature doi: 10.1038/nature11986 contributor: fullname: Tannahill – volume: 486 start-page: 222 year: 2012 ident: B288 article-title: Human gut microbiome viewed across age and geography publication-title: Nature doi: 10.1038/nature11053 contributor: fullname: Yatsunenko – volume: 26 start-page: 184 year: 2014 ident: B339 article-title: The postprandial situation as a pro-inflammatory condition publication-title: Clín Investig Arterioscler doi: 10.1016/j.arteri.2014.02.007 contributor: fullname: de Vries – volume: 143 start-page: 913 year: 2012 ident: B101 article-title: Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome publication-title: Gastroenterology doi: 10.1053/j.gastro.2012.06.031 contributor: fullname: Vrieze – volume: 172 start-page: 3254 year: 2015 ident: B215 article-title: Characterizing pharmacological ligands to study the long-chain fatty acid receptors GPR40/FFA1 and GPR120/FFA4 publication-title: Br J Pharmacol doi: 10.1111/bph.12879 contributor: fullname: Milligan – volume: 25 start-page: 489 year: 2014 ident: B571 article-title: Chronic coffee consumption in the diet-induced obese rat: impact on gut microbiota and serum metabolomics publication-title: J Nutr Biochem doi: 10.1016/j.jnutbio.2013.12.009 contributor: fullname: Cowan – volume: 136 start-page: 348 year: 2010 ident: B152 article-title: Histone/protein deacetylase inhibitors increase suppressive functions of human FOXP3 Tregs publication-title: Clin Immunol doi: 10.1016/j.clim.2010.04.018 contributor: fullname: Akimova – volume: 23 start-page: 71 year: 2006 ident: B353 article-title: Lipid raft organization and function in brush borders of epithelial cells (Review) publication-title: Mol Membr Biol doi: 10.1080/09687860500445604 contributor: fullname: Michael Danielsen – volume: 303 start-page: G675 year: 2012 ident: B378 article-title: Colonic mucosal microbiome differs from stool microbiome in cirrhosis and hepatic encephalopathy and is linked to cognition and inflammation publication-title: Am J Physiol Gastrointest Liver Physiol doi: 10.1152/ajpgi.00152.2012 contributor: fullname: Bajaj – volume: 2014 start-page: 738512 year: 2014 ident: B134 article-title: Type I diabetes mellitus: genetic factors and presumptive enteroviral etiology or protection publication-title: J Pathog doi: 10.1155/2014/738512 contributor: fullname: Precechtelova – volume: 11 start-page: 129 year: 1995 ident: B167 article-title: Small intestinal malabsorption and colonic fermentation of resistant starch and resistant peptides to short-chain fatty acids publication-title: Nutrition contributor: fullname: Nordgaard – volume: 50 start-page: 321 year: 2010 ident: B364 article-title: Protection of intestinal occludin tight junction protein by dietary gangliosides in lipopolysaccharide-induced acute inflammation publication-title: J Pediatr Gastroenterol Nutr doi: 10.1097/MPG.0b013e3181ae2ba0 contributor: fullname: Park – volume: 229 start-page: 1136 year: 2004 ident: B527 article-title: Mounting evidence for vitamin D as an environmental factor affecting autoimmune disease prevalence publication-title: Exp Biol Med doi: 10.1177/153537020422901108 contributor: fullname: Cantorna – volume: 40 start-page: 128 year: 2014 ident: B158 article-title: Activation of Gpr109a, receptor for niacin and the commensal metabolite butyrate, suppresses colonic inflammation and carcinogenesis publication-title: Immunity doi: 10.1016/j.immuni.2013.12.007 contributor: fullname: Singh – volume: 164 start-page: 3596 year: 2000 ident: B426 article-title: Indoleamine 2,3-dioxygenase production by human dendritic cells results in the inhibition of T cell proliferation publication-title: J Immunol doi: 10.4049/jimmunol.164.7.3596 contributor: fullname: Hwu – volume: 285 start-page: 2227 year: 2010 ident: B533 article-title: Direct and indirect induction by 1,25-dihydroxyvitamin D3 of the NOD2/CARD15-defensin beta2 innate immune pathway defective in Crohn disease publication-title: J Biol Chem doi: 10.1074/jbc.C109.071225 contributor: fullname: Wang – volume: 11 start-page: 497 year: 2013 ident: B174 article-title: The abundance and variety of carbohydrate-active enzymes in the human gut microbiota publication-title: Nat Rev Microbiol doi: 10.1038/nrmicro3050 contributor: fullname: El Kaoutari – volume: 109 start-page: 828 year: 2007 ident: B317 article-title: Diet, rumen biohydrogenation and nutritional quality of cow and goat milk fat publication-title: Eur J Lipid Sci Technol doi: 10.1002/ejlt.200700080 contributor: fullname: Ferlay – volume: 63 start-page: 1275 year: 2014 ident: B182 article-title: A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis publication-title: Gut doi: 10.1136/gutjnl-2013-304833 contributor: fullname: Machiels – volume: 63 start-page: 497 year: 2012 ident: B576 article-title: The inhibitory effect of polyphenols on human gut microbiota publication-title: J Physiol Pharmacol contributor: fullname: Duda-Chodak – year: 2013 ident: B454 article-title: Influence of oxidative stress on aryl hydrocarbon receptor signaling publication-title: Karolinska Institutet contributor: fullname: Bardbori – volume: 9 start-page: 31 year: 2009 ident: B368 article-title: Distribution and biological activities of the flavonoid luteolin publication-title: Mini Rev Med Chem doi: 10.2174/138955709787001712 contributor: fullname: Lopez-Lazaro – volume: 189 start-page: 2566 year: 2007 ident: B321 article-title: Metabolism of linoleic acid by human gut bacteria: different routes for biosynthesis of conjugated linoleic acid publication-title: J Bacteriol doi: 10.1128/JB.01359-06 contributor: fullname: Devillard – volume: 504 start-page: 451 year: 2013 ident: B150 article-title: Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation publication-title: Nature doi: 10.1038/nature12726 contributor: fullname: Arpaia – volume: 15 start-page: 47 year: 2014 ident: B488 article-title: Human gut microbes use multiple transporters to distinguish vitamin B 12 analogs and compete in the gut publication-title: Cell Host Microbe doi: 10.1016/j.chom.2013.12.007 contributor: fullname: Degnan – volume: 75 start-page: 263 year: 1993 ident: B588 article-title: Interleukin-10-deficient mice develop chronic enterocolitis publication-title: Cell doi: 10.1016/0092-8674(93)80068-P contributor: fullname: Kühn – volume: 75 start-page: 33 year: 2007 ident: B450 article-title: The intersection between the aryl hydrocarbon receptor (AhR)- and retinoic acid-signaling pathways publication-title: Vitam Horm doi: 10.1016/S0083-6729(06)75002-6 contributor: fullname: Murphy – volume: 4 start-page: e36 year: 2013 ident: B74 article-title: Study of the viral and microbial communities associated with Crohn’s disease: a metagenomic approach publication-title: Clin Transl Gastroenterol doi: 10.1038/ctg.2013.9 contributor: fullname: Pérez-Brocal – volume: 22 start-page: 237 year: 2008 ident: B369 article-title: VSL# 3 probiotic upregulates intestinal mucosal alkaline sphingomyelinase and reduces inflammation publication-title: Can J Gastroenterol doi: 10.1155/2008/520383 contributor: fullname: Soo – volume: 91 start-page: 1042 year: 2006 ident: B115 article-title: Weight loss reduces adipose tissue cathepsin S and its circulating levels in morbidly obese women publication-title: J Clin Endocrinol Metab doi: 10.1210/jc.2005-1601 contributor: fullname: Taleb – volume: 115 start-page: 650 year: 1985 ident: B598 article-title: Composition of fecal fiber from human subjects publication-title: J Nutr doi: 10.1093/jn/115.5.650 contributor: fullname: Marlett – volume: 13 start-page: 685 year: 2011 ident: B217 article-title: Future of GPR109A agonists in the treatment of dyslipidaemia publication-title: Diabetes Obes Metab doi: 10.1111/j.1463-1326.2011.01400.x contributor: fullname: Wanders – volume: 5 start-page: e9085 year: 2010 ident: B125 article-title: Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults publication-title: PLoS One doi: 10.1371/journal.pone.0009085 contributor: fullname: Larsen – volume: 17 start-page: 72 year: 2015 ident: B133 article-title: Diet dominates host genotype in shaping the murine gut microbiota publication-title: Cell Host Microbe doi: 10.1016/j.chom.2014.11.010 contributor: fullname: Carmody – volume: 487 start-page: 104 year: 2012 ident: B382 article-title: Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/-mice publication-title: Nature doi: 10.1038/nature11225 contributor: fullname: Devkota – volume: 224 start-page: 29 year: 2003 ident: B463 article-title: An orally active Th1/Th2 balance modulator, M50367, suppresses Th2 differentiation of naıve Th cell in vitro publication-title: Cell Immunol doi: 10.1016/j.cellimm.2003.07.001 contributor: fullname: Kato – volume: 70 start-page: 46 year: 2002 ident: B461 article-title: Mechanism of TCDD-induced suppression of antibody production: effect on T cell-derived cytokine production in the primary immune reaction of mice publication-title: Toxicol Sci doi: 10.1093/toxsci/70.1.46 contributor: fullname: Ito – volume: 182 start-page: 4289 year: 2009 ident: B532 article-title: Vitamin d-directed rheostatic regulation of monocyte antibacterial responses publication-title: J Immunol doi: 10.4049/jimmunol.0803736 contributor: fullname: Adams – volume: 311 start-page: 1770 year: 2006 ident: B542 article-title: Toll-like receptor triggering of a vitamin D-mediated human antimicrobial response publication-title: Science doi: 10.1126/science.1123933 contributor: fullname: Liu – volume: 114 start-page: 389 year: 2012 ident: B495 article-title: Phosphatidylcholine functional foods and nutraceuticals: a potential approach to prevent non-alcoholic fatty liver disease publication-title: Eur J Lipid Sci Technol doi: 10.1002/ejlt.201100350 contributor: fullname: Duric – volume: 3 start-page: 5 year: 2016 ident: B39 article-title: Modeling-enabled systems nutritional immunology publication-title: Front Nutr doi: 10.3389/fnut.2016.00005 contributor: fullname: Verma – volume: 8 start-page: e73365 year: 2013 ident: B53 article-title: Predictive computational modeling of the mucosal immune responses during Helicobacter pylori infection publication-title: PLoS One doi: 10.1371/journal.pone.0073365 contributor: fullname: Carbo – volume: 36 start-page: 460 year: 2015 ident: B138 article-title: The bilateral responsiveness between intestinal microbes and IgA publication-title: Trends Immunol doi: 10.1016/j.it.2015.06.006 contributor: fullname: Macpherson – volume: 66 start-page: 117 year: 2002 ident: B459 article-title: Effect of a single oral dose of 2,3,7,8-tetrachlorodibenzo-p-dioxin on immune function in male NC/Nga mice publication-title: Toxicol Sci doi: 10.1093/toxsci/66.1.117 contributor: fullname: Fujimaki – volume: 23 start-page: 366 year: 2010 ident: B205 article-title: From the gut to the peripheral tissues: the multiple effects of butyrate publication-title: Nutr Res Rev doi: 10.1017/S0954422410000247 contributor: fullname: Guilloteau – volume: 281 start-page: 22021 year: 2006 ident: B434 article-title: Kynurenic acid as a ligand for orphan G protein-coupled receptor GPR35 publication-title: J Biol Chem doi: 10.1074/jbc.M603503200 contributor: fullname: Wang – volume: 489 start-page: 242 year: 2012 ident: B136 article-title: Functional interactions between the gut microbiota and host metabolism publication-title: Nature doi: 10.1038/nature11552 contributor: fullname: Tremaroli – volume: 21 start-page: 402 year: 2006 ident: B16 article-title: The –237C – >T promoter polymorphism of the SLC11A1 gene is associated with a protective effect in relation to inflammatory bowel disease in the South African population publication-title: Int J Colorectal Dis doi: 10.1007/s00384-005-0019-z contributor: fullname: Zaahl – volume: 17 start-page: 657 year: 2013 ident: B371 article-title: Pleiotropic roles of bile acids in metabolism publication-title: Cell Metabol doi: 10.1016/j.cmet.2013.03.013 contributor: fullname: de Aguiar Vallim – start-page: 233 volume-title: Handbook of Vitamins year: 2007 ident: B485 contributor: fullname: Anonymous – volume: 340 start-page: 1456 year: 2013 ident: B159 article-title: GPR15-mediated homing controls immune homeostasis in the large intestine mucosa publication-title: Science doi: 10.1126/science.1237013 contributor: fullname: Kim – volume: 105 start-page: 16731 year: 2008 ident: B70 article-title: Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.0804812105 contributor: fullname: Sokol – volume: 38 start-page: 127 year: 2003 ident: B345 article-title: A comparison of the effects of medium-and long-chain triglycerides on neutrophil stimulation in experimental ileitis publication-title: J Gastroenterol doi: 10.1007/s005350300021 contributor: fullname: Ohta – volume: 4 start-page: 482 year: 2006 ident: B103 article-title: The impact of increased body mass index on the clinical course of Crohn’s disease publication-title: Clin Gastroenterol Hepatol doi: 10.1016/j.cgh.2005.12.015 contributor: fullname: Hass – volume: 47 start-page: 913 year: 1998 ident: B106 article-title: Leptin secretion from subcutaneous and visceral adipose tissue in women publication-title: Diabetes doi: 10.2337/diabetes.47.6.913 contributor: fullname: Van Harmelen – volume: 19 start-page: 1540 issue: 11 year: 2005 ident: B114 article-title: Cathepsin S, a novel biomarker of adiposity: relevance to atherogenesis publication-title: FASEB J doi: 10.1096/fj.05-3673fje contributor: fullname: Taleb – volume: 111 start-page: 3311 issue: Pt 22 year: 1998 ident: B474 article-title: Aryl-hydrocarbon receptor is an inhibitory regulator of lipid synthesis and of commitment to adipogenesis publication-title: J Cell Sci doi: 10.1242/jcs.111.22.3311 contributor: fullname: Alexander – volume: 19 start-page: 2685 year: 2005 ident: B530 article-title: Large-scale in silico and microarray-based identification of direct 1, 25-dihydroxyvitamin D3 target genes publication-title: Mol Endocrinol doi: 10.1210/me.2005-0106 contributor: fullname: Wang – volume: 7 start-page: e52132 year: 2012 ident: B600 article-title: Crohn’s disease-associated adherent-invasive Escherichia coli adhesion is enhanced by exposure to the ubiquitous dietary polysaccharide maltodextrin publication-title: PLoS One doi: 10.1371/journal.pone.0052132 contributor: fullname: Nickerson – volume: 192 start-page: 1545 year: 2000 ident: B36 article-title: Follicular B helper T cells express CXC chemokine receptor 5, localize to B cell follicles, and support immunoglobulin production publication-title: J Exp Med doi: 10.1084/jem.192.11.1545 contributor: fullname: Breitfeld – volume: 1125 start-page: 171 year: 2008 ident: B190 article-title: Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea publication-title: Ann N Y Acad Sci doi: 10.1196/annals.1419.019 contributor: fullname: Liu – volume: 60 start-page: 2171 year: 2012 ident: B443 article-title: Dietary flavonoid naringenin induces regulatory T cells via an aryl hydrocarbon receptor mediated pathway publication-title: J Agric Food Chem doi: 10.1021/jf204625y contributor: fullname: Wang – volume: 66 start-page: 716 year: 2014 ident: B281 article-title: Long-chain omega-3 polyunsaturated fatty acid intake and risk of colorectal cancer publication-title: Nutr Cancer doi: 10.1080/01635581.2013.804101 contributor: fullname: Kantor – volume: 332 start-page: 65 year: 2011 ident: B413 article-title: Chronic mucocutaneous candidiasis in humans with inborn errors of interleukin-17 immunity publication-title: Science doi: 10.1126/science.1200439 contributor: fullname: Puel – volume: 288 start-page: 690 year: 2001 ident: B551 article-title: Butyrate-induced differentiation of Caco-2 cells is mediated by vitamin D receptor publication-title: Biochem Biophys Res Commun doi: 10.1006/bbrc.2001.5832 contributor: fullname: Gaschott – volume: 29 start-page: 608 year: 1988 ident: B510 article-title: Breath methane and large bowel cancer risk in contrasting African populations publication-title: Gut doi: 10.1136/gut.29.5.608 contributor: fullname: Segal – volume: 87 start-page: S83 year: 2002 ident: B272 article-title: Impact of parenteral n-3 fatty acids on experimental acute colitis publication-title: Br J Nutr doi: 10.1079/BJN2001460 contributor: fullname: Campos – volume: 140 start-page: 1720 year: 2011 ident: B66 article-title: The commensal microbiota and enteropathogens in the pathogenesis of inflammatory bowel diseases publication-title: Gastroenterology doi: 10.1053/j.gastro.2011.01.054 contributor: fullname: Chassaing – volume: 54 start-page: 2325 year: 2013 ident: B203 article-title: The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism publication-title: J Lipid Res doi: 10.1194/jlr.R036012 contributor: fullname: den Besten – volume: 457 start-page: 480 year: 2009 ident: B98 article-title: A core gut microbiome in obese and lean twins publication-title: Nature doi: 10.1038/nature07540 contributor: fullname: Turnbaugh – volume: 15 start-page: 307 year: 2014 ident: B154 article-title: Life at the beginning: perturbation of the microbiota by antibiotics in early life and its role in health and disease publication-title: Nat Immunol doi: 10.1038/ni.2847 contributor: fullname: Zeissig – volume: 343 start-page: 432 year: 2014 ident: B515 article-title: Adaptation of innate lymphoid cells to a micronutrient deficiency promotes type 2 barrier immunity publication-title: Science doi: 10.1126/science.1247606 contributor: fullname: Spencer – volume: 25 start-page: 234 year: 2013 ident: B548 article-title: The human microbiome and autoimmunity publication-title: Curr Opin Rheumatol doi: 10.1097/BOR.0b013e32835cedbf contributor: fullname: Proal – volume: 105 start-page: 9721 year: 2008 ident: B410 article-title: Aryl hydrocarbon receptor regulates Stat1 activation and participates in the development of Th17 cells publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.0804231105 contributor: fullname: Kimura – volume: 15 start-page: 5549 year: 2009 ident: B225 article-title: Short-chain fatty acids act as antiinflammatory mediators by regulating prostaglandin E(2) and cytokines publication-title: World J Gastroenterol doi: 10.3748/wjg.15.5549 contributor: fullname: Cox – volume: 30 start-page: 173 year: 2008 ident: B537 article-title: Vitamin D discovery outpaces FDA decision making publication-title: Bioessays doi: 10.1002/bies.20708 contributor: fullname: Marshall – volume: 146 start-page: 5092 year: 2005 ident: B229 article-title: Acetate and propionate short chain fatty acids stimulate adipogenesis via GPCR43 publication-title: Endocrinology doi: 10.1210/en.2005-0545 contributor: fullname: Hong – volume: 341 start-page: 1241214 year: 2013 ident: B102 article-title: Gut microbiota from twins discordant for obesity modulate metabolism in mice publication-title: Science doi: 10.1126/science.1241214 contributor: fullname: Ridaura – volume: 307 start-page: 1955 year: 2005 ident: B179 article-title: Glycan foraging in vivo by an intestine-adapted bacterial symbiont publication-title: Science doi: 10.1126/science.1109051 contributor: fullname: Sonnenburg – volume: 67 start-page: 659 year: 2015 ident: B261 article-title: Polyunsaturated fatty acids and inflammation publication-title: IUBMB Life doi: 10.1002/iub.1428 contributor: fullname: Marion-Letellier – volume: 472 start-page: 57 year: 2011 ident: B497 article-title: Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease publication-title: Nature doi: 10.1038/nature09922 contributor: fullname: Wang – volume: 280 start-page: 17601 year: 2005 ident: B360 article-title: Ceramide 1-phosphate acts as a positive allosteric activator of group IVA cytosolic phospholipase A2 alpha and enhances the interaction of the enzyme with phosphatidylcholine publication-title: J Biol Chem doi: 10.1074/jbc.M414173200 contributor: fullname: Subramanian – volume: 293 start-page: G1068 year: 2007 ident: B401 article-title: A novel phosphatase upregulated in Akp3 knockout mice publication-title: Am J Physiol Gastrointest Liver Physiol doi: 10.1152/ajpgi.00073.2007 contributor: fullname: Narisawa – volume: 8 start-page: e80476 year: 2013 ident: B566 article-title: High-fat diet reduces the formation of butyrate, but increases succinate, inflammation, liver fat and cholesterol in rats, while dietary fibre counteracts these effects publication-title: PLoS One doi: 10.1371/journal.pone.0080476 contributor: fullname: Jakobsdottir – volume: 116 start-page: 984 year: 2006 ident: B466 article-title: Nrf2 is a critical regulator of the innate immune response and survival during experimental sepsis publication-title: J Clin Invest doi: 10.1172/JCI25790 contributor: fullname: Thimmulappa – volume: 103 start-page: 11276 year: 2006 ident: B265 article-title: Transgenic mice rich in endogenous omega-3 fatty acids are protected from colitis publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.0601280103 contributor: fullname: Hudert – volume: 21 start-page: 1178 year: 2010 ident: B44 article-title: Abscisic acid ameliorates atherosclerosis by suppressing macrophage and CD4 T cell recruitment into the aortic wall publication-title: J Nutr Biochem doi: 10.1016/j.jnutbio.2009.10.003 contributor: fullname: Guri – volume: 42 start-page: 1118 year: 2010 ident: B17 article-title: Genome-wide meta-analysis increases to 71 the number of confirmed Crohn’s disease susceptibility loci publication-title: Nat Genet doi: 10.1038/ng.717 contributor: fullname: Franke – volume: 8 start-page: 2116 year: 2014 ident: B132 article-title: Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity publication-title: ISME J doi: 10.1038/ismej.2014.45 contributor: fullname: Everard – volume: 4 start-page: 307 year: 2012 ident: B506 article-title: Hydrogenotrophic microbiota distinguish native Africans from African and European Americans publication-title: Environ Microbiol Rep doi: 10.1111/j.1758-2229.2012.00334.x contributor: fullname: Nava – volume: 204 start-page: 1757 year: 2007 ident: B516 article-title: A functionally specialized population of mucosal CD103+ DCs induces Foxp3+ regulatory T cells via a TGF-beta and retinoic acid-dependent mechanism publication-title: J Exp Med doi: 10.1084/jem.20070590 contributor: fullname: Coombes – volume: 441 start-page: 235 year: 2006 ident: B31 article-title: Reciprocal developmental pathways for the generation of pathogenic effector TH17 and regulatory T cells publication-title: Nature doi: 10.1038/nature04753 contributor: fullname: Bettelli – volume: 35 start-page: 13 year: 2011 ident: B513 article-title: The role of retinoic acid in tolerance and immunity publication-title: Immunity doi: 10.1016/j.immuni.2011.07.002 contributor: fullname: Hall – volume: 121 start-page: 91 year: 2014 ident: B155 article-title: The role of short-chain fatty acids in health and disease publication-title: Adv Immunol doi: 10.1016/B978-0-12-800100-4.00003-9 contributor: fullname: Tan – volume: 72 start-page: 222 year: 2008 ident: B349 article-title: Analysis of sphingolipid classes and their contents in meals publication-title: Biosci Biotechnol Biochem doi: 10.1271/bbb.70463 contributor: fullname: Yunoki – volume: 41 start-page: 135 year: 1992 ident: B498 article-title: The exogenous origin of trimethylamine in the mouse publication-title: Metabolism doi: 10.1016/0026-0495(92)90140-6 contributor: fullname: Al-Waiz – volume: 5 start-page: 2516 year: 1991 ident: B428 article-title: Relationship between interferon-gamma, indoleamine 2,3-dioxygenase, and tryptophan catabolism publication-title: FASEB J doi: 10.1096/fasebj.5.11.1907934 contributor: fullname: Taylor – volume: 427 start-page: 504 year: 2004 ident: B264 article-title: Transgenic mice: fat-1 mice convert n-6 to n-3 fatty acids publication-title: Nature doi: 10.1038/427504a contributor: fullname: Kang – volume: 86 start-page: 103 year: 1991 ident: B389 article-title: Growth and activities of sulphate-reducing bacteria in gut contents of healthy subjects and patients with ulcerative colitis publication-title: FEMS Microbiol Lett doi: 10.1111/j.1574-6941.1991.tb01742.x contributor: fullname: Gibson – volume: 76 start-page: 11 year: 2005 ident: B522 article-title: D-hormone and the immune system publication-title: J Rheumatol contributor: fullname: Cantorna – volume: 51 start-page: 232 year: 2012 ident: B258 article-title: Omega-3 fatty acids in anti-inflammation (pro-resolution) and GPCRs publication-title: Prog Lipid Res doi: 10.1016/j.plipres.2012.02.003 contributor: fullname: Im – volume: 108 start-page: 1612 year: 2012 ident: B313 article-title: Attenuation of colonic inflammation by partial replacement of dietary linoleic acid with α-linolenic acid in a rat model of inflammatory bowel disease publication-title: Br J Nutr doi: 10.1017/S0007114511007197 contributor: fullname: Tyagi – volume: 278 start-page: 37041 year: 2003 ident: B330 article-title: Reciprocal modulation of Toll-like receptor-4 signaling pathways involving MyD88 and phosphatidylinositol 3-kinase/AKT by saturated and polyunsaturated fatty acids publication-title: J Biol Chem doi: 10.1074/jbc.M305213200 contributor: fullname: Lee – start-page: 27 volume-title: Methods in Molecular Biology: Phosphatase Modulators year: 2013 ident: B394 article-title: Multisystemic functions of alkaline phosphatases doi: 10.1007/978-1-62703-562-0_3 contributor: fullname: Buchet – volume: 181 start-page: 4545 year: 2008 ident: B470 article-title: Disruption of the transcription factor Nrf2 promotes pro-oxidative dendritic cells that stimulate Th2-like immunoresponsiveness upon activation by ambient particulate matter publication-title: J Immunol doi: 10.4049/jimmunol.181.7.4545 contributor: fullname: Williams – volume: 584 start-page: 2381 year: 2010 ident: B230 article-title: Roles of GPR41 and GPR43 in leptin secretory responses of murine adipocytes to short chain fatty acids publication-title: FEBS Lett doi: 10.1016/j.febslet.2010.04.027 contributor: fullname: Zaibi – volume: 36 start-page: 324 year: 2012 ident: B525 article-title: Review article: vitamin D and inflammatory bowel disease – established concepts and future directions publication-title: Aliment Pharmacol Ther doi: 10.1111/j.1365-2036.2012.05181.x contributor: fullname: Garg – volume: 108 start-page: 801 year: 2012 ident: B338 article-title: Influence of a high-fat diet on gut microbiota, intestinal permeability and metabolic endotoxaemia publication-title: Br J Nutr doi: 10.1017/S0007114512001213 contributor: fullname: Moreira – volume: 6 start-page: 1212 year: 2013 ident: B286 article-title: Interaction of fatty acid genotype and diet on changes in colonic fatty acids in a Mediterranean diet intervention study publication-title: Cancer Prev Res (Phila) doi: 10.1158/1940-6207.CAPR-13-0131 contributor: fullname: Porenta – volume: 16 start-page: S2 year: 2015 ident: B38 article-title: Multiscale modeling of mucosal immune responses publication-title: BMC Bioinformatics doi: 10.1186/1471-2105-16-S12-S2 contributor: fullname: Mei – volume: 500 start-page: 232 year: 2013 ident: B148 article-title: Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota publication-title: Nature doi: 10.1038/nature12331 contributor: fullname: Atarashi – volume: 366 start-page: 618 year: 2005 ident: B255 article-title: Rethinking lipid mediators publication-title: Lancet doi: 10.1016/S0140-6736(05)67119-X contributor: fullname: Weylandt – volume: 7 start-page: 339 year: 2008 ident: B435 article-title: Structural diversity of G protein-coupled receptors and significance for drug discovery publication-title: Nat Rev Drug Discov doi: 10.1038/nrd2518 contributor: fullname: Lagerström – volume: 87 start-page: 817 year: 2008 ident: B25 article-title: A new inflammatory cytokine on the block: re-thinking periodontal disease and the Th1/Th2 paradigm in the context of Th17 cells and IL-17 publication-title: J Dent Res doi: 10.1177/154405910808700908 contributor: fullname: Gaffen – volume: 21 start-page: 1219 year: 2015 ident: B55 article-title: Recent advances in characterizing the gastrointestinal microbiome in Crohn’s disease: a systematic review publication-title: Inflamm Bowel Dis doi: 10.1097/MIB.0000000000000382 contributor: fullname: Wright – volume: 89 start-page: 2548 year: 2004 ident: B105 article-title: Adipose tissue as an endocrine organ publication-title: J Clin Endocrinol Metab doi: 10.1210/jc.2004-0395 contributor: fullname: Kershaw – volume: 14 start-page: 282 year: 2008 ident: B419 article-title: Interleukin-22 mediates early host defense against attaching and effacing bacterial pathogens publication-title: Nat Med doi: 10.1038/nm1720 contributor: fullname: Zheng – volume: 97 start-page: 73 year: 2012 ident: B254 article-title: Omega-3 fatty acids and their lipid mediators: towards an understanding of resolvin and protectin formation publication-title: Prostaglandins Other Lipid Mediat doi: 10.1016/j.prostaglandins.2012.01.005 contributor: fullname: Weylandt – volume: 59 start-page: 1114 year: 2010 ident: B556 article-title: Transcriptional activity of the dominant gut mucosal microbiota in chronic inflammatory bowel disease patients publication-title: J Med Microbiol doi: 10.1099/jmm.0.021170-0 contributor: fullname: Rehman – volume: 6 start-page: e91 year: 2015 ident: B99 article-title: The influence of the gut microbiome on obesity, metabolic syndrome and gastrointestinal disease publication-title: Clin Transl Gastroenterol doi: 10.1038/ctg.2015.16 contributor: fullname: Parekh – volume: 130 start-page: 2285 year: 2000 ident: B318 article-title: Conjugated linoleic acid is synthesized endogenously in lactating dairy cows by Delta(9)-desaturase publication-title: J Nutr doi: 10.1093/jn/130.9.2285 contributor: fullname: Griinari – volume: 42 start-page: D199 year: 2014 ident: B340 article-title: Data, information, knowledge and principle: back to metabolism in KEGG publication-title: Nucleic Acids Res doi: 10.1093/nar/gkt1076 contributor: fullname: Kanehisa – volume: 70 start-page: 4635 year: 2004 ident: B326 article-title: Mining the microbiota of the neonatal gastrointestinal tract for conjugated linoleic acid-producing bifidobacteria publication-title: Appl Environ Microbiol doi: 10.1128/AEM.70.8.4635-4641.2004 contributor: fullname: Rosberg-Cody – volume: 117 start-page: 165 year: 1978 ident: B169 article-title: Volatile acid production from threonine, valine, leucine and isoleucine by clostridia publication-title: Arch Microbiol doi: 10.1007/BF00402304 contributor: fullname: Elsden – volume: 341 start-page: 569 year: 2013 ident: B147 article-title: The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis publication-title: Science doi: 10.1126/science.1241165 contributor: fullname: Smith – volume: 106 start-page: 1924 year: 2005 ident: B35 article-title: Balanced expression of CXCR5 and CCR7 on follicular T helper cells determines their transient positioning to lymph node follicles and is essential for efficient B-cell help publication-title: Blood doi: 10.1182/blood-2004-11-4494 contributor: fullname: Hardtke – volume: 21 start-page: 51 year: 2002 ident: B104 article-title: Crohn’s disease clinical course and severity in obese patients publication-title: Clin Nutr doi: 10.1054/clnu.2001.0503 contributor: fullname: Blain – volume: 334 start-page: 1561 year: 2011 ident: B422 article-title: Natural aryl hydrocarbon receptor ligands control organogenesis of intestinal lymphoid follicles publication-title: Science doi: 10.1126/science.1214914 contributor: fullname: Kiss – volume: 55 start-page: 205 year: 2006 ident: B10 article-title: Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach publication-title: Gut doi: 10.1136/gut.2005.073817 contributor: fullname: Manichanh – volume: 278 start-page: 11312 year: 2003 ident: B211 article-title: The Orphan G protein-coupled receptors GPR41 and GPR43 are activated by propionate and other short chain carboxylic acids publication-title: J Biol Chem doi: 10.1074/jbc.M211609200 contributor: fullname: Brown – volume: 314 start-page: 1461 year: 2006 ident: B14 article-title: A genome-wide association study identifies IL23R as an inflammatory bowel disease gene publication-title: Science doi: 10.1126/science.1135245 contributor: fullname: Duerr – volume: 286 start-page: 2504 year: 2011 ident: B47 article-title: Abscisic acid regulates inflammation via ligand-binding domain-independent activation of peroxisome proliferator-activated receptor gamma publication-title: J Biol Chem doi: 10.1074/jbc.M110.160077 contributor: fullname: Bassaganya-Riera – volume: 107 start-page: 14691 year: 2010 ident: B122 article-title: Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.1005963107 contributor: fullname: De Filippo – volume: 134 start-page: 577 year: 2008 ident: B23 article-title: Microbial influences in inflammatory bowel diseases publication-title: Gastroenterology doi: 10.1053/j.gastro.2007.11.059 contributor: fullname: Sartor – volume: 60 start-page: 8930 year: 2012 ident: B586 article-title: Urolithins are the main urinary microbial-derived phenolic metabolites discriminating a moderate consumption of nuts in free-living subjects with diagnosed metabolic syndrome publication-title: J Agric Food Chem doi: 10.1021/jf301509w contributor: fullname: Tulipani – volume: 2 start-page: 716 year: 2008 ident: B58 article-title: Molecular analysis of the gut microbiota of identical twins with Crohn’s disease publication-title: ISME J doi: 10.1038/ismej.2008.37 contributor: fullname: Dicksved – volume: 5 start-page: e01438 year: 2014 ident: B208 article-title: Differential modulation by Akkermansia muciniphila and Faecalibacterium prausnitzii of host peripheral lipid metabolism and histone acetylation in mouse gut organoids publication-title: MBio doi: 10.1128/mBio.01438 contributor: fullname: Lukovac – volume: 2 start-page: 308 year: 2005 ident: B524 article-title: Mechanisms of disease: vitamin D and inflammatory bowel disease publication-title: Nat Clin Prac Gastroenterol Hepatol doi: 10.1038/ncpgasthep0215 contributor: fullname: Lim – volume: 39 start-page: 199 year: 2014 ident: B457 article-title: The Nrf2 regulatory network provides an interface between redox and intermediary metabolism publication-title: Trends Biochem Sci doi: 10.1016/j.tibs.2014.02.002 contributor: fullname: Hayes – volume: 15 start-page: 382 year: 2014 ident: B560 article-title: The treatment-naive microbiome in new-onset Crohn’s disease publication-title: Cell Host Microbe doi: 10.1016/j.chom.2014.02.005 contributor: fullname: Gevers – volume: 60 start-page: 631 year: 2011 ident: B121 article-title: Dysbiosis of the faecal microbiota in patients with Crohn’s disease and their unaffected relatives publication-title: Gut doi: 10.1136/gut.2010.223263 contributor: fullname: Joossens – volume: 51 start-page: 304 year: 2010 ident: B183 article-title: DNA damage and toxicogenomic analyses of hydrogen sulfide in human intestinal epithelial FHs 74 Int cells publication-title: Environ Mol Mutagen doi: 10.1002/em.20546 contributor: fullname: Attene-Ramos – volume: 59 start-page: 1476 year: 2010 ident: B406 article-title: Intestinal alkaline phosphatase preserves the normal homeostasis of gut microbiota publication-title: Gut doi: 10.1136/gut.2010.211706 contributor: fullname: Malo – volume: 17 start-page: 892 year: 2015 ident: B577 article-title: Dietary saponins from four popular herbal tea exert prebiotic-like effects on gut microbiota in C57BL/6 mice publication-title: J Funct Foods doi: 10.1016/j.jff.2015.06.050 contributor: fullname: Chen – volume: 498 start-page: 99 year: 2013 ident: B126 article-title: Gut metagenome in European women with normal, impaired and diabetic glucose control publication-title: Nature doi: 10.1038/nature12198 contributor: fullname: Karlsson – volume: 60 start-page: 2465 year: 2011 ident: B472 article-title: Nrf2 represses FGF21 during long-term high-fat diet-induced obesity in mice publication-title: Diabetes doi: 10.2337/db11-0112 contributor: fullname: Chartoumpekis – volume: 29 start-page: 87 year: 2012 ident: B291 article-title: Effects of zinc and DHA on the epigenetic regulation of human neuronal cells publication-title: Cell Physiol Biochem doi: 10.1159/000337590 contributor: fullname: Sadli – volume: 40 start-page: 302 year: 1996 ident: B301 article-title: Susceptibility of Helicobacter pylori to bactericidal properties of medium-chain monoglycerides and free fatty acids publication-title: Antimicrob Agents Chemother doi: 10.1128/AAC.40.2.302 contributor: fullname: Petschow – volume: 57 start-page: 424 year: 2008 ident: B75 article-title: Dysbiosis in inflammatory bowel disease: a role for bacteriophages? publication-title: Gut doi: 10.1136/gut.2007.134668 contributor: fullname: Lepage – volume: 368 start-page: 1575 year: 2013 ident: B500 article-title: Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk publication-title: N Engl J Med doi: 10.1056/NEJMoa1109400 contributor: fullname: Tang – volume: 210 start-page: 1117 year: 2013 ident: B518 article-title: Retinoic acid expression associates with enhanced IL-22 production by gammadelta T cells and innate lymphoid cells and attenuation of intestinal inflammation publication-title: J Exp Med doi: 10.1084/jem.20121588 contributor: fullname: Mielke – volume: 340 start-page: 715 year: 1999 ident: B445 article-title: Dietary flavonols quercetin and kaempferol are ligands of the aryl hydrocarbon receptor that affect CYP1A1 transcription differentially publication-title: Biochem J doi: 10.1042/bj3400715 contributor: fullname: Ciolino – volume: 55 start-page: 2257 year: 1989 ident: B194 article-title: Acetate production by methanogenic bacteria publication-title: Appl Environ Microbiol doi: 10.1128/aem.55.9.2257-2261.1989 contributor: fullname: Westermann – volume: 54 start-page: 2277 year: 2005 ident: B116 article-title: Reduction of macrophage infiltration and chemoattractant gene expression changes in white adipose tissue of morbidly obese subjects after surgery-induced weight loss publication-title: Diabetes doi: 10.2337/diabetes.54.8.2277 contributor: fullname: Cancello – volume: 304 start-page: C905 year: 2013 ident: B270 article-title: Inhibitory effects of omega-3 fatty acids on injury-induced epidermal growth factor receptor transactivation contribute to delayed wound healing publication-title: Am J Physiol Cell Physiol doi: 10.1152/ajpcell.00379.2012 contributor: fullname: Turk – volume: 2 start-page: 93 year: 2011 ident: B611 article-title: Environmental and gut bacteroidetes: the food connection publication-title: Front Microbiol doi: 10.3389/fmicb.2011.00093 contributor: fullname: Thomas – volume-title: Evaluation of Certain Food Additives and Contaminants: Sixty-First Report of the Joint FAO/WHO Expert Committee on Food Additives (Vol 61) year: 2004 ident: B594 contributor: fullname: Joint FAO/WHO Expert Committee on Food Additives, World Health Organization – volume: 28 start-page: 3 year: 2006 ident: B27 article-title: Regulatory T cells in experimental autoimmune disease publication-title: Semin Immunopathol doi: 10.1007/s00281-006-0021-8 contributor: fullname: Suri-Payer – volume: 1 start-page: 142 year: 2007 ident: B28 article-title: TGFbeta and retinoic acid intersect in immune-regulation publication-title: Cell Adh Migr doi: 10.4161/cam.1.3.5062 contributor: fullname: Mucida – volume: 444 start-page: 1022 year: 2006 ident: B97 article-title: Microbial ecology: human gut microbes associated with obesity publication-title: Nature doi: 10.1038/4441022a contributor: fullname: Ley – volume: 108 start-page: 820 year: 2012 ident: B237 article-title: A review of the potential mechanisms for the lowering of colorectal oncogenesis by butyrate publication-title: Br J Nutr doi: 10.1017/S0007114512001948 contributor: fullname: Fung – volume: 31 start-page: 79 year: 1983 ident: B604 article-title: Carrageenan publication-title: IARC Monogr Eval Carcinog Risk Chem Hum contributor: fullname: IARC Working Group on the Evaluation of the Carcinogenic Risk of Chemicals to Humans – volume: 302 start-page: G168 year: 2012 ident: B375 article-title: Linkage of gut microbiome with cognition in hepatic encephalopathy publication-title: Am J Physiol Gastrointest Liver Physiol doi: 10.1152/ajpgi.00190.2011 contributor: fullname: Bajaj – volume: 12 start-page: 106 year: 2006 ident: B60 article-title: Specificities of the fecal microbiota in inflammatory bowel disease publication-title: Inflamm Bowel Dis doi: 10.1097/01.MIB.0000200323.38139.c6 contributor: fullname: Sokol – volume: 3 start-page: e287 year: 2006 ident: B110 article-title: Acute-phase serum amyloid A: an inflammatory adipokine and potential link between obesity and its metabolic complications publication-title: PLoS Med doi: 10.1371/journal.pmed.0030287 contributor: fullname: Yang – start-page: 1937 volume-title: Kirk-Othmer Concise Encylclopedia of Chemical Technology year: 1999 ident: B596 article-title: Sulfur compounds contributor: fullname: Weil – volume: 28 start-page: 1060 year: 1990 ident: B298 article-title: Unsaturated fatty acids and viability of Helicobacter (Campylobacter) pylori publication-title: J Clin Microbiol doi: 10.1128/jcm.28.5.1060-1061.1990 contributor: fullname: Hazell – volume: 28 start-page: 724 year: 2008 ident: B561 article-title: Sustained modulation of intestinal bacteria by exclusive enteral nutrition used to treat children with Crohn’s disease publication-title: Aliment Pharmacol Ther doi: 10.1111/j.1365-2036.2008.03796.x contributor: fullname: Leach – volume: 21 start-page: 951 year: 1980 ident: B509 article-title: Studies on breath methane: the effect of ethnic origins and lactulose publication-title: Gut doi: 10.1136/gut.21.11.951 contributor: fullname: Pitt – volume: 17 start-page: 141 year: 2013 ident: B279 article-title: Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice publication-title: Cell Metab doi: 10.1016/j.cmet.2012.12.007 contributor: fullname: Parks – volume: 50 start-page: 1949 year: 2007 ident: B482 article-title: l-glutamine supplementation induces insulin resistance in adipose tissue and improves insulin signalling in liver and muscle of rats with diet-induced obesity publication-title: Diabetologia doi: 10.1007/s00125-007-0723-z contributor: fullname: Prada – volume: 132 start-page: 3566 year: 2002 ident: B5 article-title: (n-3) Fatty acids and infectious disease resistance publication-title: J Nutr doi: 10.1093/jn/132.12.3566 contributor: fullname: Anderson – volume: 142 start-page: 148 year: 2012 ident: B423 article-title: Establishment of true niacin deficiency in quinolinic acid phosphoribosyltransferase knockout mice publication-title: J Nutr doi: 10.3945/jn.112.167569 contributor: fullname: Terakara – start-page: 161 volume-title: Bioactive Sphingolipids in Cancer Biology and Therapy year: 2015 ident: B347 article-title: Dietary sphingolipids in colon cancer prevention doi: 10.1007/978-3-319-20750-6_8 contributor: fullname: Schmelz – volume: 19 start-page: 2685 year: 2005 ident: B544 article-title: Large-scale in silico and microarray-based identification of direct 1,25-dihydroxyvitamin D3 target genes publication-title: Mol Endocrinol doi: 10.1210/me.2005-0106 contributor: fullname: Wang – volume: 461 start-page: 1282 year: 2009 ident: B227 article-title: Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43 publication-title: Nature doi: 10.1038/nature08530 contributor: fullname: Maslowski – volume: 10 start-page: 273 year: 2004 ident: B188 article-title: Effects of mannooligosaccharides from coffee on microbiota and short chain fatty acids in rat cecum publication-title: Food Sci Technol Res doi: 10.3136/fstr.10.273 contributor: fullname: Asano – volume: 2015 start-page: 143109 year: 2015 ident: B260 article-title: Omega-3 polyunsaturated fatty acids: the way forward in times of mixed evidence publication-title: Biomed Res Int doi: 10.1155/2015/143109 contributor: fullname: Weylandt – volume: 339 start-page: 708 year: 2013 ident: B184 article-title: Host-derived nitrate boosts growth of E. coli in the inflamed gut publication-title: Science doi: 10.1126/science.1232467 contributor: fullname: Winter – volume: 86 start-page: 397 year: 2008 ident: B315 article-title: Board-invited review: recent advances in biohydrogenation of unsaturated fatty acids within the rumen microbial ecosystem publication-title: J Anim Sci doi: 10.2527/jas.2007-0588 contributor: fullname: Jenkins – volume: 14 start-page: 858 year: 2008 ident: B62 article-title: Analysis of bacterial bowel communities of IBD patients: what has it revealed? publication-title: Inflamm Bowel Dis doi: 10.1002/ibd.20392 contributor: fullname: Sokol – year: 2008 ident: B562 article-title: Bacteria induced vitamin D receptor dysfunction in autoimmune disease: theoretical and practical implications for interpretation of serum vitamin D metabolite levels contributor: fullname: Perez – volume: 278 start-page: 25481 year: 2003 ident: B212 article-title: Functional characterization of human receptors for short chain fatty acids and their role in polymorphonuclear cell activation publication-title: J Biol Chem doi: 10.1074/jbc.M301403200 contributor: fullname: Le Poul – volume: 28 start-page: 33 year: 2013 ident: B278 article-title: Effect of dietary fat on intestinal inflammatory diseases publication-title: J Gastroenterol Hepatol doi: 10.1111/jgh.12252 contributor: fullname: Hokari – volume: 30 start-page: 2022 year: 2002 ident: B480 article-title: Glutamine supplementation in serious illness: a systematic review of the evidence publication-title: Crit Care Med doi: 10.1097/00003246-200209000-00011 contributor: fullname: Novak – volume: 68 start-page: 95 year: 2013 ident: B171 article-title: Intestinal luminal nitrogen metabolism: role of the gut microbiota and consequences for the host publication-title: Pharmacol Res doi: 10.1016/j.phrs.2012.11.005 contributor: fullname: Davila – volume: 287 start-page: 41195 year: 2012 ident: B219 article-title: Extracellular ionic locks determine variation in constitutive activity and ligand potency between species orthologs of the free fatty acid receptors FFA2 and FFA3 publication-title: J Biol Chem doi: 10.1074/jbc.M112.396259 contributor: fullname: Hudson – volume: 6 start-page: 1578 year: 2012 ident: B491 article-title: The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic–anoxic interphases publication-title: ISME J doi: 10.1038/ismej.2012.5 contributor: fullname: Khan – volume: 17 start-page: 1433 year: 2012 ident: B492 article-title: How can Faecalibacterium prausnitzii employ riboflavin for extracellular electron transfer? publication-title: Antioxid Redox Signal doi: 10.1089/ars.2012.4701 contributor: fullname: Khan – volume: 473 start-page: 174 year: 2011 ident: B91 article-title: Enterotypes of the human gut microbiome publication-title: Nature doi: 10.1038/nature09944 contributor: fullname: Arumugam – volume: 71 start-page: 23 year: 2006 ident: B609 article-title: Bioconversion of red seaweed galactans: a focus on bacterial agarases and carrageenases publication-title: Appl Microbiol Biotechnol doi: 10.1007/s00253-006-0377-7 contributor: fullname: Michel – volume: 12 start-page: 278 year: 2006 ident: B381 article-title: Unique dietary-related mouse model of colitis publication-title: Inflamm Bowel Dis doi: 10.1097/01.MIB.0000209789.14114.63 contributor: fullname: Bernstein – volume: 70 start-page: 5810 year: 2004 ident: B199 article-title: Lactate-utilizing bacteria, isolated from human feces, that produce butyrate as a major fermentation product publication-title: Appl Environ Microbiol doi: 10.1128/AEM.70.10.5810-5817.2004 contributor: fullname: Duncan – volume: 34 start-page: 137 year: 2013 ident: B425 article-title: Indoleamine 2, 3 dioxygenase and metabolic control of immune responses publication-title: Trends Immunol doi: 10.1016/j.it.2012.10.001 contributor: fullname: Munn – volume: 25 start-page: 1878 year: 2012 ident: B444 article-title: Quercetin, resveratrol, and curcumin are indirect activators of the aryl hydrocarbon receptor (AHR) publication-title: Chem Res Toxicol doi: 10.1021/tx300169e contributor: fullname: Mohammadi-Bardbori |
SSID | ssj0000493335 |
Score | 2.4673603 |
SecondaryResourceType | review_article |
Snippet | Numerous reviews have discussed gut microbiota composition changes during inflammatory bowel diseases (IBD), particularly Crohn's disease (CD). However, most... Numerous reviews have discussed gut microbiota composition changes during inflammatory bowel diseases (IBD), particularly Crohn’s disease (CD). However, most... |
SourceID | pubmedcentral proquest crossref pubmed |
SourceType | Open Access Repository Aggregation Database Index Database |
StartPage | 290 |
SubjectTerms | Immunology |
Title | Mucosal Interactions between Genetics, Diet, and Microbiome in Inflammatory Bowel Disease |
URI | https://www.ncbi.nlm.nih.gov/pubmed/27531998 https://search.proquest.com/docview/1812442188 https://pubmed.ncbi.nlm.nih.gov/PMC4970383 |
Volume | 7 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://sdu.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1NaxsxEB3qQCGX0K8kbtqgQi6FbByv9kM6to5DLi6FtJCcFkk7Ihu861DblPz7zkjeELe3nlcSYjS782bnzRPAiSzPlUZWALDSJllO30EtTZqkOjUeS20dcjfy1XX57UZdTFkmJ-97YQJp39nmrJu3Z11zF7iVD60b9Tyx0ffZJNPkp0qOBjAgbPgsRb-PkFdKmceSJCVgeuSbtl0zi4vrDqnmy9_Skn1Pq-1o9A_E_Jsp-Sz0XL6CvQ1mFF_i3l7DC-zewMt4i-TjW7idMeucBoS_e7FRYSk2BCzButIsxXwqLhpcnQrT1WLWRPmlFkXT0TRPbtGGcrv4uviNcxoayjbv4Ofl9MfkKtncmJC4rEhXSe0o2is3liV6Y710JqsLU7sMpS_ONWJujUJP76A1hOSUkWNULh9br4ois0ruw0636PAQBCOPzGFuCjSZ8l6zMFmR15YWopDmhvC5t1z1EIUxKkoo2OBVMHjFBq-CwYfwqTdtRd7LJQnT4WK9rCK-IJihhnAQTf20Wn9GQyi3DuFpACtjbz8hhwkK2RsHef_fM49gl7cfmH7pB9hZ_VrjRxgs6_VxyNqPg8_9Afx13cM |
link.rule.ids | 230,315,729,782,786,866,887,27933,27934,53800,53802 |
linkProvider | National Library of Medicine |
linkToHtml | http://sdu.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1Jb9QwFH6iRYhe2FuG1Ui9IDWzxFnsI3TRIDoVEq0Ep8h2nkVQk6mYGSH-Pe_Zk6oDt569KMn3bH_O-_wZYF-WY6WRHQCstEmW0zyopUmTVKfGY6mtQz6NPP1ann1TR8dsk5P3Z2GCaN_ZZthdtsOu-RG0lVetG_U6sdGX2WGmKU6VHG3BXRqv4_GNTfrPSHqllHlMStIWTI9807Yr1nFx5iHVfP1bWnL0abW5Hv1HMv_VSt5YfE4e3vKxH8GDNdsUH2LxY7iD3RO4F--f_PMUvs9Yr04Vwn_BeMRhIdbSLcGO1GzifCCOGlweCNPVYtZE46YWRdNRM08B1YZEvfg4_42XVDUkfJ7Bxcnx-eE0Wd-1kLisSJdJ7YgnKDeRJXpjvXQmqwtTuwylL8YaMbdGoafRaw1xQGXkBJXLJ9arosiskruw3c07fA6COUvmMDcFmkx5r9nSrMhrSx3RYugG8L7_4tVVtNSoaCvCQFUBqIqBqgJQA3jXQ1JR3HMyw3Q4Xy2qyEyIoKgB7EWIrnvrsR1AuQHedQX21N4sIcyCt_Yaoxe3bvkW7k_PZ6fV6aezzy9hh18l6AXTV7C9_LXC17C1qFdvQsT-Ba_M8lg |
linkToPdf | http://sdu.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwpV1Nj9MwEB2xi0B74Ru2fBqJC9Jm08b5sI-w3WoRdLUSIMEpsp2xCNqkFW2F-PfM2G21hRucM7aSvHH8nHl-Bnglq6HSyA4AVtokL-g7qKXJkkxnxmOlrUPejXz2sTr_osanbJOzPeoriPadbY_7y-64b78FbeW8c-lGJ5ZeTE9yTXmqZDpvfLoH12nMDrMrC_XvkfhKKYtYmKRlmE5923Ur1nJx9SHTfARcVnEGarU7J_1FNP_US16ZgCa3_-PW78CtNesUb2LIXbiG_T24Ec-h_HUfvk5Zt04B4f9g3OqwEGsJl2BnajZzPhLjFpdHwvSNmLbRwKlD0fbUzFNidaFgL97OfuIlhYbCzwP4PDn9dHKWrM9cSFxeZsukccQXlBvJCr2xXjqTN6VpXI7Sl0ONWFij0NMotoa4oDJyhMoVI-tVWeZWyYew3896PATB3CV3WJgSTa6812xtVhaNpY5oUnQDeL156_U8WmvUtCRhsOoAVs1g1QGsAbzcwFJT_nNRw_Q4Wy3qyFCIqKgBPIowbXvb4DuAagfAbQB7a-9eIdyCx_Yap8f_3PIF3LwYT-oP787fP4EDfpIgG8yewv7yxwqfwd6iWT0PSfsbTQH02A |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Mucosal+Interactions+between+Genetics%2C+Diet%2C+and+Microbiome+in+Inflammatory+Bowel+Disease&rft.jtitle=Frontiers+in+immunology&rft.au=Basson%2C+Abigail&rft.au=Trotter%2C+Ashley&rft.au=Rodriguez-Palacios%2C+Alex&rft.au=Cominelli%2C+Fabio&rft.date=2016-08-02&rft.issn=1664-3224&rft.eissn=1664-3224&rft.volume=7&rft.spage=290&rft.epage=290&rft_id=info:doi/10.3389%2Ffimmu.2016.00290&rft.externalDBID=NO_FULL_TEXT |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1664-3224&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1664-3224&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1664-3224&client=summon |