Mucosal Interactions between Genetics, Diet, and Microbiome in Inflammatory Bowel Disease

Numerous reviews have discussed gut microbiota composition changes during inflammatory bowel diseases (IBD), particularly Crohn's disease (CD). However, most studies address the observed effects by focusing on studying the univariate connection between disease and dietary-induced alterations to...

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Published in:Frontiers in immunology Vol. 7; p. 290
Main Authors: Basson, Abigail, Trotter, Ashley, Rodriguez-Palacios, Alex, Cominelli, Fabio
Format: Journal Article
Language:English
Published: Switzerland Frontiers Media S.A 02-08-2016
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Abstract Numerous reviews have discussed gut microbiota composition changes during inflammatory bowel diseases (IBD), particularly Crohn's disease (CD). However, most studies address the observed effects by focusing on studying the univariate connection between disease and dietary-induced alterations to gut microbiota composition. The possibility that these effects may reflect a number of other interconnected (i.e., pantropic) mechanisms, activated in parallel, particularly concerning various bacterial metabolites, is in the process of being elucidated. Progress seems, however, hampered by various difficult-to-study factors interacting at the mucosal level. Here, we highlight some of such factors that merit consideration, namely: (1) the contribution of host genetics and diet in altering gut microbiome, and in turn, the crosstalk among secondary metabolic pathways; (2) the interdependence between the amount of dietary fat, the fatty acid composition, the effects of timing and route of administration on gut microbiota community, and the impact of microbiota-derived fatty acids; (3) the effect of diet on bile acid composition, and the modulator role of bile acids on the gut microbiota; (4) the impact of endogenous and exogenous intestinal micronutrients and metabolites; and (5) the need to consider food associated toxins and chemicals, which can introduce confounding immune modulating elements (e.g., antioxidant and phytochemicals in oils and proteins). These concepts, which are not mutually exclusive, are herein illustrated paying special emphasis on physiologically inter-related processes.
AbstractList Numerous reviews have discussed gut microbiota composition changes during inflammatory bowel diseases (IBD), particularly Crohn's disease (CD). However, most studies address the observed effects by focusing on studying the univariate connection between disease and dietary-induced alterations to gut microbiota composition. The possibility that these effects may reflect a number of other interconnected (i.e., pantropic) mechanisms, activated in parallel, particularly concerning various bacterial metabolites, is in the process of being elucidated. Progress seems, however, hampered by various difficult-to-study factors interacting at the mucosal level. Here, we highlight some of such factors that merit consideration, namely: (1) the contribution of host genetics and diet in altering gut microbiome, and in turn, the crosstalk among secondary metabolic pathways; (2) the interdependence between the amount of dietary fat, the fatty acid composition, the effects of timing and route of administration on gut microbiota community, and the impact of microbiota-derived fatty acids; (3) the effect of diet on bile acid composition, and the modulator role of bile acids on the gut microbiota; (4) the impact of endogenous and exogenous intestinal micronutrients and metabolites; and (5) the need to consider food associated toxins and chemicals, which can introduce confounding immune modulating elements (e.g., antioxidant and phytochemicals in oils and proteins). These concepts, which are not mutually exclusive, are herein illustrated paying special emphasis on physiologically inter-related processes.
Author Cominelli, Fabio
Rodriguez-Palacios, Alex
Trotter, Ashley
Basson, Abigail
AuthorAffiliation 1 Digestive Health Research Institute, Case Western Reserve University , Cleveland, OH , USA
2 University Hospitals Case Medical Center , Cleveland, OH , USA
AuthorAffiliation_xml – name: 2 University Hospitals Case Medical Center , Cleveland, OH , USA
– name: 1 Digestive Health Research Institute, Case Western Reserve University , Cleveland, OH , USA
Author_xml – sequence: 1
  givenname: Abigail
  surname: Basson
  fullname: Basson, Abigail
  organization: Digestive Health Research Institute, Case Western Reserve University , Cleveland, OH , USA
– sequence: 2
  givenname: Ashley
  surname: Trotter
  fullname: Trotter, Ashley
  organization: Digestive Health Research Institute, Case Western Reserve University, Cleveland, OH, USA; University Hospitals Case Medical Center, Cleveland, OH, USA
– sequence: 3
  givenname: Alex
  surname: Rodriguez-Palacios
  fullname: Rodriguez-Palacios, Alex
  organization: Digestive Health Research Institute, Case Western Reserve University , Cleveland, OH , USA
– sequence: 4
  givenname: Fabio
  surname: Cominelli
  fullname: Cominelli, Fabio
  organization: Digestive Health Research Institute, Case Western Reserve University, Cleveland, OH, USA; University Hospitals Case Medical Center, Cleveland, OH, USA
BackLink https://www.ncbi.nlm.nih.gov/pubmed/27531998$$D View this record in MEDLINE/PubMed
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Keywords fatty acids
inflammation
diet
gut microbiota
inflammatory bowel disease
Crohn’s disease
mucosal
Language English
License This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
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Specialty section: This article was submitted to Nutritional Immunology, a section of the journal Frontiers in Immunology
Edited by: Adria Carbo, Biotherapeutics Inc., USA
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Snippet Numerous reviews have discussed gut microbiota composition changes during inflammatory bowel diseases (IBD), particularly Crohn's disease (CD). However, most...
Numerous reviews have discussed gut microbiota composition changes during inflammatory bowel diseases (IBD), particularly Crohn’s disease (CD). However, most...
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SubjectTerms Immunology
Title Mucosal Interactions between Genetics, Diet, and Microbiome in Inflammatory Bowel Disease
URI https://www.ncbi.nlm.nih.gov/pubmed/27531998
https://search.proquest.com/docview/1812442188
https://pubmed.ncbi.nlm.nih.gov/PMC4970383
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