AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana

RNA-sequencing (RNA-seq) allows global gene expression analysis at the individual transcript level. Accurate quantification of transcript variants generated by alternative splicing (AS) remains a challenge. We have developed a comprehensive, nonredundant Arabidopsis reference transcript dataset (AtR...

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Bibliographic Details
Published in:	The New phytologist Vol. 208; no. 1; pp. 96 - 101
Main Authors:	Zhang, Runxuan, Calixto, Cristiane P. G., Tzioutziou, Nikoleta A., James, Allan B., Simpson, Craig G., Guo, Wenbin, Marquez, Yamile, Kalyna, Maria, Patro, Rob, Eyras, Eduardo, Barta, Andrea, Nimmo, Hugh G., Brown, John W. S.
Format:	Journal Article
Language:	English
Published:	England New Phytologist Trust 01-10-2015 Wiley Subscription Services, Inc Wiley John Wiley and Sons Inc
Subjects:	Abundance Algorithms Alternative Splicing Arabidopsis Arabidopsis - genetics Arabidopsis thaliana Base Sequence Datasets Datasets as Topic DNA Freshwater fishes Gene expression Gene Expression Profiling - methods Gene sequencing Genes Genes, Plant High resolution reverse transcription (HR RT)-PCR, RNA-sequencing (RNA-seq) high resolution reverse transcription (HR RT)‐PCR High-Throughput Nucleotide Sequencing - methods Introns Isoforms Nucleic acids Nucleotide sequence PCR Polymerase chain reaction Protein isoforms Protein Isoforms - analysis Quantification Rapid Report Rapid reports Ratios Reference Values Reproducibility of Results Reverse Transcriptase Polymerase Chain Reaction Reverse transcription Ribonucleic acid RNA RNA Splicing RNA, Messenger - analysis RNA‐sequencing (RNA‐seq) SAILFISH SALMON Sequence Analysis, RNA - methods Software Splicing Transcription Transcriptome Transcripts per million Arabidopsis thaliana alternative splicing Sailfish Salmon transcripts per million RNA-sequencing (RNA-seq) high resolution reverse transcription (HR RT)-PCR
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