Keystone metabolites of crop rhizosphere microbiomes
The role of microbes in sustaining agricultural plant growth has great potential consequences for human prosperity. Yet we have an incomplete understanding of the basic function of rhizosphere microbial communities and how they may change under future stresses, let alone how these processes might be...
Saved in:
| Published in: | Current biology Vol. 30; no. 19; pp. R1131 - R1137 |
|---|---|
| Main Authors: | , , |
| Format: | Journal Article |
| Language: | English |
| Published: |
England
Elsevier Inc
05-10-2020
|
| Online Access: | Get full text |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| Abstract | The role of microbes in sustaining agricultural plant growth has great potential consequences for human prosperity. Yet we have an incomplete understanding of the basic function of rhizosphere microbial communities and how they may change under future stresses, let alone how these processes might be harnessed to sustain or improve crop yields. A reductionist approach may aid the generation and testing of hypotheses that can ultimately be translated to agricultural practices. With this in mind, we ask whether some rhizosphere microbial communities might be governed by ‘keystone metabolites’, envisioned here as microbially produced molecules that, through antibiotic and/or growth-promoting properties, may play an outsized role in shaping the development of the community spatiotemporally. To illustrate this point, we use the example of redox-active metabolites, and in particular phenazines, which are produced by many bacteria found in agricultural soils and have well-understood catalytic properties. Phenazines can act as potent antibiotics against a variety of cell types, yet they also can promote the acquisition of essential inorganic nutrients. In this essay, we suggest the ways these metabolites might affect microbial communities and ultimately agricultural productivity in two specific scenarios: firstly, in the biocontrol of beneficial and pathogenic fungi in increasingly arid crop soils and, secondly, through promotion of phosphorus bioavailability and sustainable fertilizer use. We conclude with specific proposals for future research.
Dahlstrom et al. put forward redox-active metabolites as potential ‘keystone metabolites’ that may both control the composition of microbial communities associated with plants and influence the availability of nutrients, with potentially important ramifications for crop yields in a warming climate. |
|---|---|
| AbstractList | The role of microbes in sustaining agricultural plant growth has great potential consequences for human prosperity. Yet we have an incomplete understanding of the basic function of rhizosphere microbial communities and how they may change under future stresses, let alone how these processes might be harnessed to sustain or improve crop yields. A reductionist approach may aid the generation and testing of hypotheses that can ultimately be translated to agricultural practices. With this in mind, we ask whether some rhizosphere microbial communities might be governed by ‘keystone metabolites’, envisioned here as microbially produced molecules that, through antibiotic and/or growth-promoting properties, may play an outsized role in shaping the development of the community spatiotemporally. To illustrate this point, we use the example of redox-active metabolites, and in particular phenazines, which are produced by many bacteria found in agricultural soils and have well-understood catalytic properties. Phenazines can act as potent antibiotics against a variety of cell types, yet they also can promote the acquisition of essential inorganic nutrients. In this essay, we suggest the ways these metabolites might affect microbial communities and ultimately agricultural productivity in two specific scenarios: firstly, in the biocontrol of beneficial and pathogenic fungi in increasingly arid crop soils and, secondly, through promotion of phosphorus bioavailability and sustainable fertilizer use. We conclude with specific proposals for future research.
Dahlstrom et al. put forward redox-active metabolites as potential ‘keystone metabolites’ that may both control the composition of microbial communities associated with plants and influence the availability of nutrients, with potentially important ramifications for crop yields in a warming climate. The role of microbes in sustaining agricultural plant growth has great potential consequences for human prosperity. Yet we have an incomplete understanding of the basic function of rhizosphere microbial communities and how they may change under future stresses, let alone how these processes might be harnessed to sustain or improve crop yields. A reductionist approach may aid the generation and testing of hypotheses that can ultimately be translated to agricultural practices. With this in mind, we ask whether some rhizosphere microbial communities might be governed by 'keystone metabolites', envisioned here as microbially produced molecules that, through antibiotic and/or growth-promoting properties, may play an outsized role in shaping the development of the community spatiotemporally. To illustrate this point, we use the example of redox-active metabolites, and in particular phenazines, which are produced by many bacteria found in agricultural soils and have well-understood catalytic properties. Phenazines can act as potent antibiotics against a variety of cell types, yet they also can promote the acquisition of essential inorganic nutrients. In this essay, we suggest the ways these metabolites might affect microbial communities and ultimately agricultural productivity in two specific scenarios: firstly, in the biocontrol of beneficial and pathogenic fungi in increasingly arid crop soils and, secondly, through promotion of phosphorus bioavailability and sustainable fertilizer use. We conclude with specific proposals for future research. The role of microbes in sustaining agricultural plant growth has great potential consequences for human prosperity. Yet we have an incomplete understanding of the basic function of rhizosphere microbial communities and how they may change under future stresses, let alone how these processes might be harnessed to sustain or improve crop yields. A reductionist approach may aid the generation and testing of hypotheses that can ultimately be translated to agricultural practices. With this in mind, we ask whether some rhizosphere microbial communities might be governed by “keystone metabolites”, envisioned here as microbially produced molecules that, through antibiotic and/or growth-promoting properties, may play an outsized role in shaping the development of the community spatiotemporally. To illustrate this point, we use the example of redox-active metabolites, and in particular phenazines, which are produced by many bacteria found in agricultural soils and have well-understood catalytic properties. Phenazines can act as potent antibiotics against a variety of cell types, yet they also can promote the acquisition of essential inorganic nutrients. In this essay, we suggest the ways these metabolites might affect microbial communities and ultimately agricultural productivity in two specific scenarios: i) biocontrol of beneficial and pathogenic fungi in increasingly arid crop soils and ii) promotion of phosphorus bioavailability and sustainable fertilizer use. We conclude with specific proposals for future research. |
| Author | McRose, Darcy L. Newman, Dianne K. Dahlstrom, Kurt M. |
| AuthorAffiliation | 1 Division of Biology and Biological Engineering, California Institute of Technology, Pasadena California, 91125 2 Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena California, 91125 |
| AuthorAffiliation_xml | – name: 2 Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena California, 91125 – name: 1 Division of Biology and Biological Engineering, California Institute of Technology, Pasadena California, 91125 |
| Author_xml | – sequence: 1 givenname: Kurt M. surname: Dahlstrom fullname: Dahlstrom, Kurt M. organization: Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA – sequence: 2 givenname: Darcy L. surname: McRose fullname: McRose, Darcy L. organization: Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA – sequence: 3 givenname: Dianne K. surname: Newman fullname: Newman, Dianne K. email: dkn@caltech.edu organization: Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/33022255$$D View this record in MEDLINE/PubMed |
| BookMark | eNp9kM9LwzAUx4Mobk7_AC-yo5fWl7RJUwRBhr9Q8KLn0KYvLqNtZtIN5l9vZDr04ikh7_s-7-VzRPZ71yMhpxRSClRcLFK9qlMGDFKQKQDfI2MqizKBPOf7ZAylgKSUjI3IUQgLAMpkKQ7JKMuAMcb5mOSPuAlDxE47HKratXbAMHVmqr1bTv3cfriwnKOPdRufaus6DMfkwFRtwJPvc0Jeb29eZvfJ0_Pdw-z6KdE5p0MiuDYCBKUiQ9mYDKDOZW0oIhWcsobXKKu4alkalpU1z4zBRuRFvBe0ETybkKstd7mqO2w09oOvWrX0tqv8RrnKqr-V3s7Vm1srCbwsiiwCzr8B3r2vMAyqs0Fj21Y9ulVQLA6nRcEKFqN0G42_DMGj2Y2hoL5sq4WKttWXbQVSRdux5-z3fruOH70xcLkNYLS0tuhV0BZ7jY31qAfVOPsP_hNfEJJa |
| CitedBy_id | crossref_primary_10_1016_j_jia_2022_08_043 crossref_primary_10_1093_ismeco_ycae006 crossref_primary_10_3389_fmicb_2024_1307677 crossref_primary_10_1111_nph_17908 crossref_primary_10_1094_PBIOMES_11_21_0071_R crossref_primary_10_1016_j_celrep_2024_114046 crossref_primary_10_1016_S2542_5196_21_00138_8 crossref_primary_10_1007_s00203_022_02953_3 crossref_primary_10_3389_fmicb_2022_976154 crossref_primary_10_1016_j_apsoil_2023_105050 crossref_primary_10_1016_j_cub_2022_10_008 crossref_primary_10_1016_j_envexpbot_2021_104552 crossref_primary_10_1016_j_scitotenv_2024_171952 crossref_primary_10_1016_j_scitotenv_2022_155204 crossref_primary_10_1126_science_abd1515 crossref_primary_10_3390_plants13050683 crossref_primary_10_1080_07352689_2021_1959137 crossref_primary_10_1016_j_jhazmat_2022_128828 crossref_primary_10_3390_agronomy13071876 crossref_primary_10_34133_2022_9858049 crossref_primary_10_3390_microorganisms10051053 crossref_primary_10_1094_PBIOMES_6_2 crossref_primary_10_1111_nph_17854 crossref_primary_10_1016_j_cub_2022_10_068 crossref_primary_10_1111_jam_15686 crossref_primary_10_7554_eLife_59726 |
| Cites_doi | 10.1016/j.gca.2005.03.045 10.1007/BF00511241 10.1021/cb200337h 10.1111/nph.15076 10.1094/MPMI.1998.11.11.1069 10.1128/mBio.00526-12 10.1038/382445a0 10.3389/fpls.2018.00345 10.1038/ngeo1990 10.1130/G39829.1 10.3389/fmicb.2017.01102 10.1038/s41586-018-0386-6 10.1007/s00248-017-1044-5 10.1016/j.soilbio.2009.05.004 10.1073/pnas.1719588115 10.1021/es702290a 10.1038/srep08220 10.1128/AEM.02874-09 10.1038/493286a 10.1128/AEM.06784-11 10.1021/acs.est.9b03962 10.1128/jb.170.8.3499-3508.1988 10.1016/0016-7037(92)90301-X 10.1016/j.femsec.2004.04.005 10.7717/peerj.5877 10.3390/toxins8080236 10.1038/ncomms1046 10.1080/12298093.2018.1475370 10.1073/pnas.1907500116 10.1088/1748-9326/2/1/014002 10.1128/AEM.70.2.921-928.2004 10.1017/S0889189300000886 10.1371/journal.pone.0152894 |
| ContentType | Journal Article |
| Copyright | 2020 Elsevier Inc. Copyright © 2020 Elsevier Inc. All rights reserved. |
| Copyright_xml | – notice: 2020 Elsevier Inc. – notice: Copyright © 2020 Elsevier Inc. All rights reserved. |
| DBID | NPM AAYXX CITATION 7X8 5PM |
| DOI | 10.1016/j.cub.2020.08.005 |
| DatabaseName | PubMed CrossRef MEDLINE - Academic PubMed Central (Full Participant titles) |
| DatabaseTitle | PubMed CrossRef MEDLINE - Academic |
| DatabaseTitleList | MEDLINE - Academic PubMed |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Biology |
| EISSN | 1879-0445 |
| EndPage | R1137 |
| ExternalDocumentID | 10_1016_j_cub_2020_08_005 33022255 S0960982220311593 |
| Genre | Research Support, Non-U.S. Gov't Journal Article Research Support, N.I.H., Extramural |
| GrantInformation_xml | – fundername: NIAID NIH HHS grantid: R01 AI127850 |
| GroupedDBID | --- --K -DZ -~X 0R~ 1RT 1~5 2WC 4.4 457 4G. 53G 5GY 62- 6J9 7-5 AACTN AAEDW AAFTH AAFWJ AAIAV AAKRW AALRI AAUCE AAVLU AAXUO ABJNI ABMAC ABMWF ABVKL ACGFO ACGFS ADBBV ADEZE ADJPV AEFWE AENEX AEXQZ AFTJW AGHSJ AGKMS AGUBO AHHHB AITUG ALKID ALMA_UNASSIGNED_HOLDINGS AMRAJ AZFZN BAWUL CS3 DIK DU5 E3Z EBS F5P FCP FDB FIRID IHE IXB J1W JIG LX5 M3Z M41 O-L O9- OK1 P2P RCE ROL RPZ SCP SDG SES SSZ TR2 WQ6 ZA5 0SF AAEDT AAMRU ADVLN AKAPO AKRWK NPM RIG 29F 5VS 6I. AAIKJ AAQFI AAQXK AAYXX ADMUD AGHFR ASPBG AVWKF CAG CITATION COF EJD FEDTE FGOYB G-2 HVGLF HZ~ NCXOZ OZT R2- SEW UHS XIH XPP Y6R ZGI 7X8 5PM |
| ID | FETCH-LOGICAL-c451t-65cf6061163e8df300b48bf1ee16512d5be8a04499f239b53ffed64739b71d653 |
| ISSN | 0960-9822 |
| IngestDate | Tue Sep 17 21:24:44 EDT 2024 Fri Oct 25 06:15:30 EDT 2024 Thu Sep 26 19:59:27 EDT 2024 Wed Oct 16 00:42:44 EDT 2024 Fri Feb 23 02:47:20 EST 2024 |
| IsDoiOpenAccess | false |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 19 |
| Language | English |
| License | Copyright © 2020 Elsevier Inc. All rights reserved. |
| LinkModel | OpenURL |
| MergedId | FETCHMERGED-LOGICAL-c451t-65cf6061163e8df300b48bf1ee16512d5be8a04499f239b53ffed64739b71d653 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 These authors contributed equally and are listed in alphabetical order. |
| OpenAccessLink | http://www.cell.com/article/S0960982220311593/pdf |
| PMID | 33022255 |
| PQID | 2449177272 |
| PQPubID | 23479 |
| ParticipantIDs | pubmedcentral_primary_oai_pubmedcentral_nih_gov_8059773 proquest_miscellaneous_2449177272 crossref_primary_10_1016_j_cub_2020_08_005 pubmed_primary_33022255 elsevier_sciencedirect_doi_10_1016_j_cub_2020_08_005 |
| PublicationCentury | 2000 |
| PublicationDate | 2020-10-05 |
| PublicationDateYYYYMMDD | 2020-10-05 |
| PublicationDate_xml | – month: 10 year: 2020 text: 2020-10-05 day: 05 |
| PublicationDecade | 2020 |
| PublicationPlace | England |
| PublicationPlace_xml | – name: England |
| PublicationTitle | Current biology |
| PublicationTitleAlternate | Curr Biol |
| PublicationYear | 2020 |
| Publisher | Elsevier Inc |
| Publisher_xml | – name: Elsevier Inc |
| References | Reid, Greene (bib2) 2012 Thomashow, Weller (bib8) 1988; 170 Bahram, Hildebrand, Forslund, Anderson, Soudzilovskaia, Bodegom, Bengtsson-Palme, Anslan, Coelho, Harend (bib20) 2018; 560 Whooley, McLoughlin (bib35) 1982; 15 Goldstein (bib36) 1986; 1 Simionato, Navarro, de Jesus, Barazetti, da Silva, Simões, Balbi-Peña, de Mello, Panagio, de Almeida (bib25) 2017; 8 Stumm, Sulzberger (bib31) 1992; 56 Wang, Newman (bib5) 2008; 42 Briard, Bomme, Lechner, Mislin, Lair, Prévost, Latgé, Haas, Beauvais (bib11) 2015; 5 IPCC (2019). Climate Change and Land: an IPCC special report on climate change, desertification, land degradation, sustainable land management, food security, and greenhouse gas fluxes in terrestrial ecosystems. P.R. Shukla, J. Skea, E. Calvo Buendia, V. Masson-Delmotte, H.-O. Pörtner, D.C. Roberts, P. Zhai, R. Slade, S. Connors, R. van Diemen Davies, Ryan (bib27) 2012; 7 eds. Mavrodi, Mavrodi, Elbourne, Tetu, Bonsall, Parejko, Yang, Paulsen, Weller, Thomashow (bib24) 2018; 9 Marjanovic, Nehls (bib13) 2008 Bankhead, Landa, Lutton, Weller, Gardener (bib26) 2004; 49 Strullu-Derrien, Selosse, Kenrick, Martin (bib40) 2018; 220 Lovley, Coates, Blunt-Harris, Phillips, Woodward (bib30) 1996; 382 Morris, Puttick, Clark, Edwards, Kenrick, Silvia, Wellman, Yang, Schneider, Donoghue (bib37) 2018; 115 Obersteiner, Peñuelas, Ciais, van der Velde, Janssens (bib29) 2013; 6 Morales, Grahl, Okegbe, Dietrich, Jacobs, Hogan (bib10) 2013; 4 Javaux (bib39) 2020 Lobell, Field (bib12) 2007; 2 Bonfante, Genre (bib14) 2010; 1 Levy, Merritt, Mayo, Chang, Abbott, Inglis (bib28) 2009; 41 Grahl, Kern, Newman, Hogan (bib6) 2013 Chincholkar, Thomashow (bib7) 2013 Castro, Classen, Austin, Norby, Schadt (bib19) 2010; 76 Zeng, Dong, An (bib22) 2016; 11 Yoo, Shin, Won, Song, Sang (bib17) 2018; 46 Gibson, Shih, Cumming, Fischer, Crockford, Hodgskiss, Wörndle, Creaser, Rainbird, Skulski (bib38) 2017; 46 Hall, McDermott, Anoopkumar-Dukie, McFarland, Forbes, Perkins, Davey, Chess-Williams, Kiefel, Arora (bib4) 2016; 8 Khadka, Uphoff (bib16) 2019; 7 Varoquaux, Cole, Gao, Pierroz, Baker, Patel, Madera, Jeffers, Hollingsworth, Sievert (bib21) 2019; 116 Hernandez, Kappler, Newman (bib32) 2004; 70 Yong (bib3) 2013; 493 Chin-A-Woeng, Bloemberg, van der Bij, van der Drift, Schripsema, Kroon, Scheffer, Keel, Bakker, Tichy (bib9) 2007; 11 Mavrodi, Mavrodi, Parejko, Bonsall, Kwak, Paulitz, Thomashow, Weller (bib23) 2012; 78 Peretyazhko, Sposito (bib33) 2005; 69 Zhang, Gan, Xu (bib15) 2016; 7 LeTourneau, Marshall, Grant, Freeze, Strawn, Lai, Dohnalkova, Harsh, Weller, Thomashow (bib34) 2019; 53 Mucha, Peay, Smith, Reich, Stefan´ski, Hobbie (bib18) 2018; 75 Zhang (10.1016/j.cub.2020.08.005_bib15) 2016; 7 Khadka (10.1016/j.cub.2020.08.005_bib16) 2019; 7 Davies (10.1016/j.cub.2020.08.005_bib27) 2012; 7 Varoquaux (10.1016/j.cub.2020.08.005_bib21) 2019; 116 Javaux (10.1016/j.cub.2020.08.005_bib39) 2020 Marjanovic (10.1016/j.cub.2020.08.005_bib13) 2008 Lovley (10.1016/j.cub.2020.08.005_bib30) 1996; 382 Peretyazhko (10.1016/j.cub.2020.08.005_bib33) 2005; 69 Thomashow (10.1016/j.cub.2020.08.005_bib8) 1988; 170 Yoo (10.1016/j.cub.2020.08.005_bib17) 2018; 46 Mavrodi (10.1016/j.cub.2020.08.005_bib24) 2018; 9 Bankhead (10.1016/j.cub.2020.08.005_bib26) 2004; 49 Wang (10.1016/j.cub.2020.08.005_bib5) 2008; 42 10.1016/j.cub.2020.08.005_bib1 Simionato (10.1016/j.cub.2020.08.005_bib25) 2017; 8 Hernandez (10.1016/j.cub.2020.08.005_bib32) 2004; 70 Castro (10.1016/j.cub.2020.08.005_bib19) 2010; 76 Chincholkar (10.1016/j.cub.2020.08.005_bib7) 2013 Whooley (10.1016/j.cub.2020.08.005_bib35) 1982; 15 LeTourneau (10.1016/j.cub.2020.08.005_bib34) 2019; 53 Briard (10.1016/j.cub.2020.08.005_bib11) 2015; 5 Gibson (10.1016/j.cub.2020.08.005_bib38) 2017; 46 Zeng (10.1016/j.cub.2020.08.005_bib22) 2016; 11 Strullu-Derrien (10.1016/j.cub.2020.08.005_bib40) 2018; 220 Yong (10.1016/j.cub.2020.08.005_bib3) 2013; 493 Reid (10.1016/j.cub.2020.08.005_bib2) 2012 Chin-A-Woeng (10.1016/j.cub.2020.08.005_bib9) 2007; 11 Lobell (10.1016/j.cub.2020.08.005_bib12) 2007; 2 Mavrodi (10.1016/j.cub.2020.08.005_bib23) 2012; 78 Grahl (10.1016/j.cub.2020.08.005_bib6) 2013 Morris (10.1016/j.cub.2020.08.005_bib37) 2018; 115 Hall (10.1016/j.cub.2020.08.005_bib4) 2016; 8 Mucha (10.1016/j.cub.2020.08.005_bib18) 2018; 75 Bahram (10.1016/j.cub.2020.08.005_bib20) 2018; 560 Obersteiner (10.1016/j.cub.2020.08.005_bib29) 2013; 6 Bonfante (10.1016/j.cub.2020.08.005_bib14) 2010; 1 Morales (10.1016/j.cub.2020.08.005_bib10) 2013; 4 Levy (10.1016/j.cub.2020.08.005_bib28) 2009; 41 Stumm (10.1016/j.cub.2020.08.005_bib31) 1992; 56 Goldstein (10.1016/j.cub.2020.08.005_bib36) 1986; 1 |
| References_xml | – volume: 493 start-page: 286 year: 2013 end-page: 289 ident: bib3 article-title: Bob Paine fathered an idea — and an academic family — that changed ecology publication-title: Nature contributor: fullname: Yong – volume: 560 start-page: 233 year: 2018 end-page: 237 ident: bib20 article-title: Structure and function of the global topsoil microbiome publication-title: Nature contributor: fullname: Harend – start-page: 43 year: 2013 end-page: 69 ident: bib6 article-title: The Yin and Yang of phenazine physiology publication-title: Microbial Phenazines contributor: fullname: Hogan – volume: 56 start-page: 3233 year: 1992 end-page: 3257 ident: bib31 article-title: The cycling of iron in natural environments: considerations based on laboratory studies of heterogenous redox processes publication-title: Geochimica et Cosmochimica Acta contributor: fullname: Sulzberger – year: 2012 ident: bib2 article-title: How microbes can help feed the world. Report on an American Academy of Microbiology Colloquium contributor: fullname: Greene – volume: 11 start-page: 1069 year: 2007 end-page: 1077 ident: bib9 article-title: Biocontrol by phenazine-1-carboxamide-producing publication-title: Mol. Plant Microbe Interact. contributor: fullname: Tichy – volume: 69 start-page: 3643 year: 2005 end-page: 3652 ident: bib33 article-title: Iron(III) reduction and phosphorous solubilization in humid tropical forest soils publication-title: Geochimica et Cosmochimica Acta contributor: fullname: Sposito – volume: 115 start-page: E2274 year: 2018 end-page: E2283 ident: bib37 article-title: The timescale of early land plant evolution publication-title: Proc. Natl. Acad. Sci. USA contributor: fullname: Donoghue – volume: 49 start-page: 307 year: 2004 end-page: 318 ident: bib26 article-title: Minimal changes in rhizobacterial population structure following root colonization by wild type and transgenic biocontrol strains publication-title: FEMS Microbiol. Ecol. contributor: fullname: Gardener – volume: 8 year: 2016 ident: bib4 article-title: Cellular effects of pyocyanin, a secreted virulence factor of publication-title: Toxins contributor: fullname: Arora – volume: 7 start-page: 252 year: 2012 end-page: 259 ident: bib27 article-title: Introducing the parvome: bioactive compounds in the microbial world publication-title: ACS Chem. Biol. contributor: fullname: Ryan – year: 2013 ident: bib7 article-title: Microbial Phenazines contributor: fullname: Thomashow – volume: 41 start-page: 1757 year: 2009 end-page: 1759 ident: bib28 article-title: Association between publication-title: Soil Biol. Biochem. contributor: fullname: Inglis – volume: 116 start-page: 27124 year: 2019 end-page: 27132 ident: bib21 article-title: Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses publication-title: Proc. Natl. Acad. Sci. USA contributor: fullname: Sievert – volume: 2 start-page: 014002 year: 2007 ident: bib12 article-title: Global scale climate–crop yield relationships and the impacts of recent warming publication-title: Environ. Res. Lett. contributor: fullname: Field – volume: 11 start-page: e0152894 year: 2016 ident: bib22 article-title: Bacterial community responses to soils along a latitudinal and vegetation gradient on the Loess Plateau, China publication-title: PLoS One contributor: fullname: An – start-page: 149 year: 2008 end-page: 159 ident: bib13 article-title: Ectomycorrhiza and water transport publication-title: Mycorrhiza contributor: fullname: Nehls – volume: 15 start-page: 161 year: 1982 end-page: 166 ident: bib35 article-title: The regulation of pyocyanin production in publication-title: Eur. J. Appl. Biotechnol. contributor: fullname: McLoughlin – volume: 7 start-page: 306 year: 2016 ident: bib15 article-title: Application of plant-growth-promoting fungi publication-title: Front. Plant Sci. contributor: fullname: Xu – volume: 9 start-page: 7279 year: 2018 ident: bib24 article-title: Long-term irrigation affects the dynamics and activity of the wheat rhizosphere microbiome publication-title: Front. Plant Sci. contributor: fullname: Thomashow – volume: 6 start-page: 897 year: 2013 end-page: 898 ident: bib29 article-title: The phosphorus trilemma publication-title: Nat. Geosci. contributor: fullname: Janssens – volume: 53 start-page: 1 year: 2019 end-page: 12 ident: bib34 article-title: Phenazine-1-carboxylic acid-producing bacteria enhance the reactivity of iron minerals in dryland and irrigated wheat rhizospheres publication-title: Environ. Sci. Technol. contributor: fullname: Thomashow – volume: 75 start-page: 348 year: 2018 end-page: 363 ident: bib18 article-title: Effect of simulated climate warming on the ectomycorrhizal fungal community of boreal and temperate host species growing near their shared ecotonal range limits publication-title: Microb. Ecol. contributor: fullname: Hobbie – volume: 170 start-page: 3499 year: 1988 end-page: 3508 ident: bib8 article-title: Role of a phenazine antibiotic from publication-title: J. Bacteriol. contributor: fullname: Weller – volume: 8 start-page: 1102 year: 2017 ident: bib25 article-title: The effect of phenazine-1-carboxylic acid on mycelial growth of publication-title: Front. Microbiol. contributor: fullname: de Almeida – volume: 1 start-page: 48 year: 2010 ident: bib14 article-title: Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis publication-title: Nat. Commun. contributor: fullname: Genre – volume: 220 start-page: 1012 year: 2018 end-page: 1030 ident: bib40 article-title: The origin and evolution of mycorrhizal symbioses: from palaeomycology to phylogenomics publication-title: New Phytol contributor: fullname: Martin – volume: 70 start-page: 921 year: 2004 end-page: 928 ident: bib32 article-title: Phenazines and other redox-active antibiotics promote microbial mineral reduction publication-title: Appl. Environ. Microbiol. contributor: fullname: Newman – volume: 5 start-page: 8220 year: 2015 ident: bib11 article-title: manipulates redox and iron homeostasis of its microbiota partner publication-title: Sci. Rep. contributor: fullname: Beauvais – volume: 46 start-page: 135 year: 2017 end-page: 138 ident: bib38 article-title: Precise age of publication-title: Geology contributor: fullname: Skulski – volume: 382 start-page: 445 year: 1996 end-page: 448 ident: bib30 article-title: Humic substances as electron acceptors for microbial respiration publication-title: Nature contributor: fullname: Woodward – volume: 4 start-page: e00526 year: 2013 end-page: 00512 ident: bib10 article-title: Control of publication-title: mBio contributor: fullname: Hogan – volume: 78 start-page: 804 year: 2012 end-page: 812 ident: bib23 article-title: Accumulation of the antibiotic phenazine-1-carboxylic acid in the rhizosphere of dryland cereals publication-title: Appl. Environ. Microbiol. contributor: fullname: Weller – volume: 1 start-page: 51 year: 1986 end-page: 57 ident: bib36 article-title: Bacterial solubilization of mineral phosphates: Historical perspectives and future prospects publication-title: Am. J. Alt. Agr. contributor: fullname: Goldstein – volume: 7 start-page: e5877 year: 2019 ident: bib16 article-title: Effects of publication-title: PeerJ contributor: fullname: Uphoff – volume: 76 start-page: 999 year: 2010 end-page: 1007 ident: bib19 article-title: Soil microbial community responses to multiple experimental climate change drivers publication-title: Appl. Environ. Microbiol. contributor: fullname: Schadt – start-page: 1 year: 2020 end-page: 19 ident: bib39 article-title: The early eukaryotic fossil record publication-title: Eukaryotic Membranes and Cytoskeleton contributor: fullname: Javaux – volume: 46 start-page: 147 year: 2018 end-page: 153 ident: bib17 article-title: JF27 promotes the growth of tomato plants and induces resistance against publication-title: Mycobiology contributor: fullname: Sang – volume: 42 start-page: 2380 year: 2008 end-page: 2386 ident: bib5 article-title: Redox reactions of phenazine antibiotics with ferric (hydr)oxides and molecular oxygen publication-title: Environ. Sci. Technol. contributor: fullname: Newman – volume: 69 start-page: 3643 year: 2005 ident: 10.1016/j.cub.2020.08.005_bib33 article-title: Iron(III) reduction and phosphorous solubilization in humid tropical forest soils publication-title: Geochimica et Cosmochimica Acta doi: 10.1016/j.gca.2005.03.045 contributor: fullname: Peretyazhko – volume: 15 start-page: 161 year: 1982 ident: 10.1016/j.cub.2020.08.005_bib35 article-title: The regulation of pyocyanin production in Pseudomonas aeruginosa publication-title: Eur. J. Appl. Biotechnol. doi: 10.1007/BF00511241 contributor: fullname: Whooley – year: 2012 ident: 10.1016/j.cub.2020.08.005_bib2 contributor: fullname: Reid – volume: 7 start-page: 252 year: 2012 ident: 10.1016/j.cub.2020.08.005_bib27 article-title: Introducing the parvome: bioactive compounds in the microbial world publication-title: ACS Chem. Biol. doi: 10.1021/cb200337h contributor: fullname: Davies – volume: 220 start-page: 1012 year: 2018 ident: 10.1016/j.cub.2020.08.005_bib40 article-title: The origin and evolution of mycorrhizal symbioses: from palaeomycology to phylogenomics publication-title: New Phytol doi: 10.1111/nph.15076 contributor: fullname: Strullu-Derrien – volume: 11 start-page: 1069 year: 2007 ident: 10.1016/j.cub.2020.08.005_bib9 article-title: Biocontrol by phenazine-1-carboxamide-producing Pseudomonas chlororaphis PCL1391 of tomato root rot caused by Fusarium oxysporum f. sp. radicis-lycopersici publication-title: Mol. Plant Microbe Interact. doi: 10.1094/MPMI.1998.11.11.1069 contributor: fullname: Chin-A-Woeng – year: 2013 ident: 10.1016/j.cub.2020.08.005_bib7 contributor: fullname: Chincholkar – start-page: 149 year: 2008 ident: 10.1016/j.cub.2020.08.005_bib13 article-title: Ectomycorrhiza and water transport contributor: fullname: Marjanovic – volume: 4 start-page: e00526 year: 2013 ident: 10.1016/j.cub.2020.08.005_bib10 article-title: Control of Candida albicans metabolism and biofilm formation by Pseudomonas aeruginosa phenazines publication-title: mBio doi: 10.1128/mBio.00526-12 contributor: fullname: Morales – volume: 382 start-page: 445 year: 1996 ident: 10.1016/j.cub.2020.08.005_bib30 article-title: Humic substances as electron acceptors for microbial respiration publication-title: Nature doi: 10.1038/382445a0 contributor: fullname: Lovley – volume: 9 start-page: 7279 year: 2018 ident: 10.1016/j.cub.2020.08.005_bib24 article-title: Long-term irrigation affects the dynamics and activity of the wheat rhizosphere microbiome publication-title: Front. Plant Sci. doi: 10.3389/fpls.2018.00345 contributor: fullname: Mavrodi – start-page: 1 year: 2020 ident: 10.1016/j.cub.2020.08.005_bib39 article-title: The early eukaryotic fossil record contributor: fullname: Javaux – volume: 6 start-page: 897 year: 2013 ident: 10.1016/j.cub.2020.08.005_bib29 article-title: The phosphorus trilemma publication-title: Nat. Geosci. doi: 10.1038/ngeo1990 contributor: fullname: Obersteiner – volume: 46 start-page: 135 year: 2017 ident: 10.1016/j.cub.2020.08.005_bib38 article-title: Precise age of Bangiomorpha pubescens dates the origin of eukaryotic photosynthesis publication-title: Geology doi: 10.1130/G39829.1 contributor: fullname: Gibson – volume: 8 start-page: 1102 year: 2017 ident: 10.1016/j.cub.2020.08.005_bib25 article-title: The effect of phenazine-1-carboxylic acid on mycelial growth of Botrytis cinerea produced by Pseudomonas aeruginosa LV strain publication-title: Front. Microbiol. doi: 10.3389/fmicb.2017.01102 contributor: fullname: Simionato – volume: 560 start-page: 233 year: 2018 ident: 10.1016/j.cub.2020.08.005_bib20 article-title: Structure and function of the global topsoil microbiome publication-title: Nature doi: 10.1038/s41586-018-0386-6 contributor: fullname: Bahram – volume: 75 start-page: 348 year: 2018 ident: 10.1016/j.cub.2020.08.005_bib18 article-title: Effect of simulated climate warming on the ectomycorrhizal fungal community of boreal and temperate host species growing near their shared ecotonal range limits publication-title: Microb. Ecol. doi: 10.1007/s00248-017-1044-5 contributor: fullname: Mucha – volume: 41 start-page: 1757 year: 2009 ident: 10.1016/j.cub.2020.08.005_bib28 article-title: Association between Burkholderia species and arbuscular mycorrhizal fungus spores in soil publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2009.05.004 contributor: fullname: Levy – volume: 115 start-page: E2274 year: 2018 ident: 10.1016/j.cub.2020.08.005_bib37 article-title: The timescale of early land plant evolution publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1719588115 contributor: fullname: Morris – volume: 42 start-page: 2380 year: 2008 ident: 10.1016/j.cub.2020.08.005_bib5 article-title: Redox reactions of phenazine antibiotics with ferric (hydr)oxides and molecular oxygen publication-title: Environ. Sci. Technol. doi: 10.1021/es702290a contributor: fullname: Wang – volume: 5 start-page: 8220 year: 2015 ident: 10.1016/j.cub.2020.08.005_bib11 article-title: Pseudomonas aeruginosa manipulates redox and iron homeostasis of its microbiota partner Aspergillus fumigatus via phenazines publication-title: Sci. Rep. doi: 10.1038/srep08220 contributor: fullname: Briard – volume: 76 start-page: 999 year: 2010 ident: 10.1016/j.cub.2020.08.005_bib19 article-title: Soil microbial community responses to multiple experimental climate change drivers publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.02874-09 contributor: fullname: Castro – volume: 493 start-page: 286 year: 2013 ident: 10.1016/j.cub.2020.08.005_bib3 article-title: Bob Paine fathered an idea — and an academic family — that changed ecology publication-title: Nature doi: 10.1038/493286a contributor: fullname: Yong – start-page: 43 year: 2013 ident: 10.1016/j.cub.2020.08.005_bib6 article-title: The Yin and Yang of phenazine physiology contributor: fullname: Grahl – volume: 78 start-page: 804 year: 2012 ident: 10.1016/j.cub.2020.08.005_bib23 article-title: Accumulation of the antibiotic phenazine-1-carboxylic acid in the rhizosphere of dryland cereals publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.06784-11 contributor: fullname: Mavrodi – volume: 53 start-page: 1 year: 2019 ident: 10.1016/j.cub.2020.08.005_bib34 article-title: Phenazine-1-carboxylic acid-producing bacteria enhance the reactivity of iron minerals in dryland and irrigated wheat rhizospheres publication-title: Environ. Sci. Technol. doi: 10.1021/acs.est.9b03962 contributor: fullname: LeTourneau – volume: 170 start-page: 3499 year: 1988 ident: 10.1016/j.cub.2020.08.005_bib8 article-title: Role of a phenazine antibiotic from Pseudomonas fluorescens in biological control of Gaeumannomyces graminis var. tritici publication-title: J. Bacteriol. doi: 10.1128/jb.170.8.3499-3508.1988 contributor: fullname: Thomashow – volume: 56 start-page: 3233 year: 1992 ident: 10.1016/j.cub.2020.08.005_bib31 article-title: The cycling of iron in natural environments: considerations based on laboratory studies of heterogenous redox processes publication-title: Geochimica et Cosmochimica Acta doi: 10.1016/0016-7037(92)90301-X contributor: fullname: Stumm – ident: 10.1016/j.cub.2020.08.005_bib1 – volume: 7 start-page: 306 year: 2016 ident: 10.1016/j.cub.2020.08.005_bib15 article-title: Application of plant-growth-promoting fungi Trichoderma longibrachiatum T6 enhances tolerance of wheat to salt stress through improvement of antioxidative defense system and gene expression publication-title: Front. Plant Sci. contributor: fullname: Zhang – volume: 49 start-page: 307 year: 2004 ident: 10.1016/j.cub.2020.08.005_bib26 article-title: Minimal changes in rhizobacterial population structure following root colonization by wild type and transgenic biocontrol strains publication-title: FEMS Microbiol. Ecol. doi: 10.1016/j.femsec.2004.04.005 contributor: fullname: Bankhead – volume: 7 start-page: e5877 year: 2019 ident: 10.1016/j.cub.2020.08.005_bib16 article-title: Effects of Trichoderma seedling treatment with system of rice intensification management and with conventional management of transplanted rice publication-title: PeerJ doi: 10.7717/peerj.5877 contributor: fullname: Khadka – volume: 8 year: 2016 ident: 10.1016/j.cub.2020.08.005_bib4 article-title: Cellular effects of pyocyanin, a secreted virulence factor of Pseudomonas aeruginosa publication-title: Toxins doi: 10.3390/toxins8080236 contributor: fullname: Hall – volume: 1 start-page: 48 year: 2010 ident: 10.1016/j.cub.2020.08.005_bib14 article-title: Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis publication-title: Nat. Commun. doi: 10.1038/ncomms1046 contributor: fullname: Bonfante – volume: 46 start-page: 147 year: 2018 ident: 10.1016/j.cub.2020.08.005_bib17 article-title: Aspergillus terreus JF27 promotes the growth of tomato plants and induces resistance against Pseudomonas syringae pv. tomato publication-title: Mycobiology doi: 10.1080/12298093.2018.1475370 contributor: fullname: Yoo – volume: 116 start-page: 27124 year: 2019 ident: 10.1016/j.cub.2020.08.005_bib21 article-title: Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1907500116 contributor: fullname: Varoquaux – volume: 2 start-page: 014002 year: 2007 ident: 10.1016/j.cub.2020.08.005_bib12 article-title: Global scale climate–crop yield relationships and the impacts of recent warming publication-title: Environ. Res. Lett. doi: 10.1088/1748-9326/2/1/014002 contributor: fullname: Lobell – volume: 70 start-page: 921 year: 2004 ident: 10.1016/j.cub.2020.08.005_bib32 article-title: Phenazines and other redox-active antibiotics promote microbial mineral reduction publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.70.2.921-928.2004 contributor: fullname: Hernandez – volume: 1 start-page: 51 year: 1986 ident: 10.1016/j.cub.2020.08.005_bib36 article-title: Bacterial solubilization of mineral phosphates: Historical perspectives and future prospects publication-title: Am. J. Alt. Agr. doi: 10.1017/S0889189300000886 contributor: fullname: Goldstein – volume: 11 start-page: e0152894 year: 2016 ident: 10.1016/j.cub.2020.08.005_bib22 article-title: Bacterial community responses to soils along a latitudinal and vegetation gradient on the Loess Plateau, China publication-title: PLoS One doi: 10.1371/journal.pone.0152894 contributor: fullname: Zeng |
| SSID | ssj0012896 |
| Score | 2.5149155 |
| Snippet | The role of microbes in sustaining agricultural plant growth has great potential consequences for human prosperity. Yet we have an incomplete understanding of... |
| SourceID | pubmedcentral proquest crossref pubmed elsevier |
| SourceType | Open Access Repository Aggregation Database Index Database Publisher |
| StartPage | R1131 |
| Title | Keystone metabolites of crop rhizosphere microbiomes |
| URI | https://dx.doi.org/10.1016/j.cub.2020.08.005 https://www.ncbi.nlm.nih.gov/pubmed/33022255 https://search.proquest.com/docview/2449177272 https://pubmed.ncbi.nlm.nih.gov/PMC8059773 |
| Volume | 30 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://sdu.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1Zb9NAEF6lRUi8IG7CJSPxROTIxx7eR0SCigI80CLxtlrba7VRlaAkfui_Z2YPH-UQIPFiOes4mcxMxnPtN4S8ymTDyjJp4pJrEVNRsVjzRMYV-K6Z1izlFqz65FR8-loslnQ5mYRRpf3af5U0rIGscefsX0i7-1BYgHOQORxB6nD8I7mvQDQIsI2zoUHAuMXYdmvgqK7ZDjvs9ogkANcvHAZT2AKyHsOQenSmPpN9frk_7LZWfVbt7jD7OO9zemE-4wKYeTX70F0BE-ozrAtQQyBqNR-mGSCmtEXyPvcV9r-M2jMx_okRAdA9TZwJLQSWWxxIZLCxvvbidUkOLObnNPWPAdO9Fj-17S7NsJ5XbTlHCi30qidxDJl9anH00PVJEExI5kfkRgaGyIbc71ddlQmCTVvLDr8iVL1t_9-1r_mV3_JjXHK9vXbgr5zdIbd9oBG9cRpyl0zM5h656UaPXt0nNOhJNNCTaNtEqCfRQE-igZ48IF_eLc_ensR-gkZcUZYeYs6qBiLUFJxuU9RNniQlLcomNSbl4OnVrDSFBllJ2WS5LFneNKbmVMC5SGvO8ofkeAOkPCYRA17JSkhDhaayLkqemZpyikY9kVpPyevAH_XNAaWo0EG4VsBMhcxUOPM0YVNCAweV9_ScB6dA2L-77WXgtgIriKUtvTHbdq_ASZWpwKaCKXnkuN9Rkec2qQF3i5Fcujcgwvr4yubi3CKtFwnCM-ZP_o3cp-RW_096Ro4Pu9Y8J0f7un1h9fA7iieZ_w |
| link.rule.ids | 230,315,782,786,887,27933,27934 |
| linkProvider | Flying Publisher |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Keystone+metabolites+of+crop+rhizosphere+microbiomes&rft.jtitle=Current+biology&rft.au=Dahlstrom%2C+Kurt+M.&rft.au=McRose%2C+Darcy+L.&rft.au=Newman%2C+Dianne+K.&rft.date=2020-10-05&rft.pub=Elsevier+Inc&rft.issn=0960-9822&rft.eissn=1879-0445&rft.volume=30&rft.issue=19&rft.spage=R1131&rft.epage=R1137&rft_id=info:doi/10.1016%2Fj.cub.2020.08.005&rft.externalDocID=S0960982220311593 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0960-9822&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0960-9822&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0960-9822&client=summon |