IPAVS: Integrated Pathway Resources, Analysis and Visualization System
Integrated Pathway Resources, Analysis and Visualization System (iPAVS) is an integrated biological pathway database designed to support pathway discovery in the fields of proteomics, transcriptomics, metabolomics and systems biology. The key goal of IPAVS is to provide biologists access to expert-c...
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| Published in: | Nucleic acids research Vol. 40; no. D1; pp. D803 - D808 |
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| Main Authors: | , , , , |
| Format: | Journal Article |
| Language: | English |
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Oxford University Press
01-01-2012
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| Abstract | Integrated Pathway Resources, Analysis and Visualization System (iPAVS) is an integrated biological pathway database designed to support pathway discovery in the fields of proteomics, transcriptomics, metabolomics and systems biology. The key goal of IPAVS is to provide biologists access to expert-curated pathways from experimental data belonging to specific biological contexts related to cell types, tissues, organs and diseases. IPAVS currently integrates over 500 human pathways (consisting of 24 574 interactions) that include metabolic-, signaling- and disease-related pathways, drug-action pathways and several large process maps collated from other pathway resources. IPAVS web interface allows biologists to browse and search pathway resources and provides tools for data import, management, visualization and analysis to support the interpretation of biological data in light of cellular processes. Systems Biology Graphical Notations (SBGN) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway notations are used for the visual display of pathway information. The integrated datasets in IPAVS are made available in several standard data formats that can be downloaded. IPAVS is available at: http://ipavs.cidms.org. |
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| AbstractList | Integrated Pathway Resources, Analysis and Visualization System (iPAVS) is an integrated biological pathway database designed to support pathway discovery in the fields of proteomics, transcriptomics, metabolomics and systems biology. The key goal of IPAVS is to provide biologists access to expert-curated pathways from experimental data belonging to specific biological contexts related to cell types, tissues, organs and diseases. IPAVS currently integrates over 500 human pathways (consisting of 24 574 interactions) that include metabolic-, signaling- and disease-related pathways, drug–action pathways and several large process maps collated from other pathway resources. IPAVS web interface allows biologists to browse and search pathway resources and provides tools for data import, management, visualization and analysis to support the interpretation of biological data in light of cellular processes. Systems Biology Graphical Notations (SBGN) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway notations are used for the visual display of pathway information. The integrated datasets in IPAVS are made available in several standard data formats that can be downloaded. IPAVS is available at:
http://ipavs.cidms.org. Integrated Pathway Resources, Analysis and Visualization System (iPAVS) is an integrated biological pathway database designed to support pathway discovery in the fields of proteomics, transcriptomics, metabolomics and systems biology. The key goal of IPAVS is to provide biologists access to expert-curated pathways from experimental data belonging to specific biological contexts related to cell types, tissues, organs and diseases. IPAVS currently integrates over 500 human pathways (consisting of 24 574 interactions) that include metabolic-, signaling- and disease-related pathways, drug-action pathways and several large process maps collated from other pathway resources. IPAVS web interface allows biologists to browse and search pathway resources and provides tools for data import, management, visualization and analysis to support the interpretation of biological data in light of cellular processes. Systems Biology Graphical Notations (SBGN) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway notations are used for the visual display of pathway information. The integrated datasets in IPAVS are made available in several standard data formats that can be downloaded. IPAVS is available at: http://ipavs.cidms.org. |
| Author | Rani, Shilpa Cayetano, Joseph Kim, Do Han Sreenivasaiah, Pradeep Kumar Arul, Novino |
| AuthorAffiliation | School of Life Sciences and Systems Biology Research Center, Gwangju Institute of Science and Technology, Gwangju 500-712, Korea |
| AuthorAffiliation_xml | – name: School of Life Sciences and Systems Biology Research Center, Gwangju Institute of Science and Technology, Gwangju 500-712, Korea |
| Author_xml | – sequence: 1 givenname: Pradeep Kumar surname: Sreenivasaiah fullname: Sreenivasaiah, Pradeep Kumar – sequence: 2 givenname: Shilpa surname: Rani fullname: Rani, Shilpa – sequence: 3 givenname: Joseph surname: Cayetano fullname: Cayetano, Joseph – sequence: 4 givenname: Novino surname: Arul fullname: Arul, Novino – sequence: 5 givenname: Do Han surname: Kim fullname: Kim, Do Han email: dhkim@gist.ac.kr |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/22140115$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.1038/msb4100057 10.1097/FPC.0b013e32832b16ba 10.1007/s12033-010-9336-8 10.1093/nar/gkp875 10.1038/msb.2008.7 10.1093/bioinformatics/btq143 10.1093/nar/gkq1156 10.1161/CIRCRESAHA.110.227033 10.1093/bfgp/elq021 10.1371/journal.pbio.1000472 10.1093/nar/gkp1002 10.1038/nbt.1666 10.1186/1471-2105-11-87 10.1038/nbt.1558 10.1093/nar/gkp896 10.1093/nar/gkp983 10.1186/1752-0509-4-121 10.1093/nar/gkq1018 10.1109/JPROC.2008.925458 10.1093/nar/gkq1039 10.1093/nar/gkp1019 10.1016/j.drudis.2010.08.002 10.1093/nar/gkn653 10.1186/1471-2105-6-144 |
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| Title | IPAVS: Integrated Pathway Resources, Analysis and Visualization System |
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