Human aromatic amino acid decarboxylase is an asymmetric and flexible enzyme: Implication in aromatic amino acid decarboxylase deficiency

• Published in: Protein science Vol. 32; no. 8; pp. e4732 - n/a
• Main Authors: Bisello, Giovanni, Ribeiro, Rui P., Perduca, Massimiliano, Belviso, Benny Danilo, Polverino de' Laureto, Patrizia, Giorgetti, Alejandro, Caliandro, Rocco, Bertoldi, Mariarita
• Format: Journal Article
• Language: English
• Published: Hoboken, USA John Wiley & Sons, Inc 01-08-2023; Wiley Subscription Services, Inc
• Subjects: AADC deficiency; Amino acids; Asymmetry; Basal ganglia; Biosynthesis; Catalysis; Central nervous system diseases; Children; Cognitive ability; Crystal structure; Crystallography; Dopamine; Dynamic structural analysis; Enzymes; Flexibility; human aromatic amino acid decarboxylase; Levodopa; L‐Dopa methylester; Molecular dynamics; Molecular structure; Movement disorders; Pathogenicity; Pathogens; Protein structure; Proteins; Proteolysis; Serotonin; small angle x‐ray scattering; Structural integrity; Substrates; x‐ray diffraction; small angle x-ray scattering; human aromatic amino acid decarboxylase; L-Dopa methylester; x-ray diffraction; molecular dynamics; AADC deficiency
• ISSN: 0961-8368; 1469-896X
• DOI: 10.1002/pro.4732

Human aromatic amino acid decarboxylase (AADC) is a pyridoxal 5′‐phosphate‐dependent enzyme responsible for the biosynthesis of dopamine and serotonin, essential neurotransmitters involved in motor and cognitive abilities. Mutations in its gene lead to AADC deficiency, a monogenic rare neurometabolic childhood parkinsonism characterized by severe motor and neurodevelopmental symptoms. Here, for the first time, we solved the crystal structure of human holoAADC in the internal aldimine (1.9 Å) and in the external aldimine (2.4 Å) of the substrate analog L‐Dopa methylester. In this intermediate, the highly flexible AADC catalytic loop (CL) is captured in a closed state contacting all protein domains. In addition, each active site, composed by residues of both subunits, is connected to the other through weak interactions and a central cavity. By combining crystallographic analyses with all‐atom and coarse‐grained molecular dynamics simulations, SAXS investigations and limited proteolysis experiments, we realized that the functionally obligate homodimeric AADC enzyme in solution is an elongated, asymmetric molecule, where the fluctuations of the CL are coupled to flexibility at the edge between the N‐terminal and C‐terminal domains. The structural integrity of this peripheral protein region is essential to catalysis, as assessed by both artificial and 37 AADC deficiency pathogenic variants leading to the interpretation that structural dynamics in protein regions far from the active site is essential for CL flexibility and the acquirement of a correct catalytically competent structure. This could represent the molecular basis for pathogenicity prediction in AADC deficiency.