Mitochondrial coding genome analysis of tropical root-knot nematodes (Meloidogyne) supports haplotype based diagnostics and reveals evidence of recent reticulate evolution
The polyphagous parthenogenetic root-knot nematodes of the genus Meloidogyne are considered to be the most significant nematode pest in sub-tropical and tropical agriculture. Despite the crucial need for correct diagnosis, identification of these pathogens remains problematic. The traditionally used...
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| Published in: | Scientific reports Vol. 6; no. 1; p. 22591 |
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| Abstract | The polyphagous parthenogenetic root-knot nematodes of the genus
Meloidogyne
are considered to be the most significant nematode pest in sub-tropical and tropical agriculture. Despite the crucial need for correct diagnosis, identification of these pathogens remains problematic. The traditionally used diagnostic strategies, including morphometrics, host-range tests, biochemical and molecular techniques, now appear to be unreliable due to the recently-suggested hybrid origin of root-knot nematodes. In order to determine a suitable barcode region for these pathogens nine quickly-evolving mitochondrial coding genes were screened. Resulting haplotype networks revealed closely related lineages indicating a recent speciation, an anthropogenic-aided distribution through agricultural practices, and evidence for reticulate evolution within
M. arenaria
. Nonetheless, nucleotide polymorphisms harbor enough variation to distinguish these closely-related lineages. Furthermore, completeness of lineage sorting was verified by screening 80 populations from widespread geographical origins and variable hosts. Importantly, our results indicate that mitochondrial haplotypes are strongly linked and consistent with traditional esterase isozyme patterns, suggesting that different parthenogenetic lineages can be reliably identified using mitochondrial haplotypes. The study indicates that the barcode region Nad5 can reliably identify the major lineages of tropical root-knot nematodes. |
|---|---|
| AbstractList | The polyphagous parthenogenetic root-knot nematodes of the genus
Meloidogyne
are considered to be the most significant nematode pest in sub-tropical and tropical agriculture. Despite the crucial need for correct diagnosis, identification of these pathogens remains problematic. The traditionally used diagnostic strategies, including morphometrics, host-range tests, biochemical and molecular techniques, now appear to be unreliable due to the recently-suggested hybrid origin of root-knot nematodes. In order to determine a suitable barcode region for these pathogens nine quickly-evolving mitochondrial coding genes were screened. Resulting haplotype networks revealed closely related lineages indicating a recent speciation, an anthropogenic-aided distribution through agricultural practices, and evidence for reticulate evolution within
M. arenaria
. Nonetheless, nucleotide polymorphisms harbor enough variation to distinguish these closely-related lineages. Furthermore, completeness of lineage sorting was verified by screening 80 populations from widespread geographical origins and variable hosts. Importantly, our results indicate that mitochondrial haplotypes are strongly linked and consistent with traditional esterase isozyme patterns, suggesting that different parthenogenetic lineages can be reliably identified using mitochondrial haplotypes. The study indicates that the barcode region Nad5 can reliably identify the major lineages of tropical root-knot nematodes. The polyphagous parthenogenetic root-knot nematodes of the genus Meloidogyne are considered to be the most significant nematode pest in sub-tropical and tropical agriculture. Despite the crucial need for correct diagnosis, identification of these pathogens remains problematic. The traditionally used diagnostic strategies, including morphometrics, host-range tests, biochemical and molecular techniques, now appear to be unreliable due to the recently-suggested hybrid origin of root-knot nematodes. In order to determine a suitable barcode region for these pathogens nine quickly-evolving mitochondrial coding genes were screened. Resulting haplotype networks revealed closely related lineages indicating a recent speciation, an anthropogenic-aided distribution through agricultural practices, and evidence for reticulate evolution within M. arenaria. Nonetheless, nucleotide polymorphisms harbor enough variation to distinguish these closely-related lineages. Furthermore, completeness of lineage sorting was verified by screening 80 populations from widespread geographical origins and variable hosts. Importantly, our results indicate that mitochondrial haplotypes are strongly linked and consistent with traditional esterase isozyme patterns, suggesting that different parthenogenetic lineages can be reliably identified using mitochondrial haplotypes. The study indicates that the barcode region Nad5 can reliably identify the major lineages of tropical root-knot nematodes. |
| ArticleNumber | 22591 |
| Author | Coyne, Danny Janssen, Toon Verhaeven, Myrtle Bert, Wim Karssen, Gerrit |
| Author_xml | – sequence: 1 givenname: Toon surname: Janssen fullname: Janssen, Toon email: toon.janssen@ugent.be organization: Department of Biology, Nematology Research Unit, Ghent University – sequence: 2 givenname: Gerrit surname: Karssen fullname: Karssen, Gerrit organization: Department of Biology, Nematology Research Unit, Ghent University, National Plant Protection Organization, Wageningen Nematode Collection – sequence: 3 givenname: Myrtle surname: Verhaeven fullname: Verhaeven, Myrtle organization: Department of Biology, Nematology Research Unit, Ghent University – sequence: 4 givenname: Danny surname: Coyne fullname: Coyne, Danny organization: International Institute of Tropical Agriculture (IITA), c/o icipe, Kasarani – sequence: 5 givenname: Wim surname: Bert fullname: Bert, Wim email: wim.bert@ugent.be organization: Department of Biology, Nematology Research Unit, Ghent University |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26940543$$D View this record in MEDLINE/PubMed |
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| Snippet | The polyphagous parthenogenetic root-knot nematodes of the genus
Meloidogyne
are considered to be the most significant nematode pest in sub-tropical and... The polyphagous parthenogenetic root-knot nematodes of the genus Meloidogyne are considered to be the most significant nematode pest in sub-tropical and... |
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| SubjectTerms | 45/22 45/77 631/181/457 631/208/728 631/208/8 631/45/731 82/29 Agricultural practices Animals Anthropogenic factors Biological Evolution DNA Barcoding, Taxonomic DNA, Mitochondrial - genetics Esterases - genetics Evolution Gene Regulatory Networks Genes, Helminth - genetics Genetic Speciation Genomes Haplotypes Humanities and Social Sciences Humans Morphometry multidisciplinary Nematodes Parthenogenesis - genetics Pathogens Plant Roots Plants Science Science (multidisciplinary) Secernentea Infections - diagnosis Speciation Tropical Climate Tylenchoidea - genetics Worms |
| Title | Mitochondrial coding genome analysis of tropical root-knot nematodes (Meloidogyne) supports haplotype based diagnostics and reveals evidence of recent reticulate evolution |
| URI | https://link.springer.com/article/10.1038/srep22591 https://www.ncbi.nlm.nih.gov/pubmed/26940543 https://www.proquest.com/docview/1898715661 https://search.proquest.com/docview/1770873957 https://pubmed.ncbi.nlm.nih.gov/PMC4778069 |
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