Investigating Triticeae anther gene promoter activity in transgenic Brachypodium distachyon

There remains a vast gap in our knowledge of the promoter cis-acting elements responsible for the transcriptional regulation of Triticeae anther-specific genes. In an attempt to identify conserved cis-elements, 14 pollen-specific and 8 tapetum-specific Triticeae putative promoter sequences were anal...

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Published in:Planta Vol. 245; no. 2; pp. 385 - 396
Main Authors: Zaidi, Mohsin A., O’Leary, Stephen J. B., Wu, Shaobo, Chabot, Denise, Gleddie, Steve, Laroche, André, Eudes, François, Robert, Laurian S.
Format: Journal Article
Language:English
Published: Berlin/Heidelberg Springer Science + Business Media 01-02-2017
Springer Berlin Heidelberg
Springer Nature B.V
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Abstract There remains a vast gap in our knowledge of the promoter cis-acting elements responsible for the transcriptional regulation of Triticeae anther-specific genes. In an attempt to identify conserved cis-elements, 14 pollen-specific and 8 tapetum-specific Triticeae putative promoter sequences were analyzed using different promoter sequence analysis tools. Several cis-elements were found to be enriched in these sequences and their possible role in gene expression regulation in the anther is discussed. Despite the fact that potential cis-acting elements can be identified within putative promoter sequence datasets, determining whether particular promoter sequences can in fact direct proper tissue-specific and developmental gene expression still needs to be confirmed via functional assays preferably performed in closely related plants. Transgenic functional assays with Triticeae species remain challenging and Brachypodium distachyon may represent a suitable alternative. The promoters of the triticale pollen-specific genes group 3 pollen allergen (PAL3) and group 4 pollen allergen (PAL4), as well as the tapetum-specific genes chalcone synthase-like 1 (CHSL1), from wheat and cysteine-rich protein 1 (CRP1) from triticale were fused to the green fluorescent protein gene (GFP) and analyzed in transgenic Brachypodium. This report demonstrates that this model species could serve to accelerate the functional analysis of Triticeae anther-specific gene promoters.
AbstractList MAIN CONCLUSIONIn this report, we demonstrate that Brachypodium distachyon could serve as a relatively high throughput in planta functional assay system for Triticeae anther-specific gene promoters. There remains a vast gap in our knowledge of the promoter cis-acting elements responsible for the transcriptional regulation of Triticeae anther-specific genes. In an attempt to identify conserved cis-elements, 14 pollen-specific and 8 tapetum-specific Triticeae putative promoter sequences were analyzed using different promoter sequence analysis tools. Several cis-elements were found to be enriched in these sequences and their possible role in gene expression regulation in the anther is discussed. Despite the fact that potential cis-acting elements can be identified within putative promoter sequence datasets, determining whether particular promoter sequences can in fact direct proper tissue-specific and developmental gene expression still needs to be confirmed via functional assays preferably performed in closely related plants. Transgenic functional assays with Triticeae species remain challenging and Brachypodium distachyon may represent a suitable alternative. The promoters of the triticale pollen-specific genes group 3 pollen allergen (PAL3) and group 4 pollen allergen (PAL4), as well as the tapetum-specific genes chalcone synthase-like 1 (CHSL1), from wheat and cysteine-rich protein 1 (CRP1) from triticale were fused to the green fluorescent protein gene (GFP) and analyzed in transgenic Brachypodium. This report demonstrates that this model species could serve to accelerate the functional analysis of Triticeae anther-specific gene promoters.
In this report, we demonstrate that Brachypodium distachyon could serve as a relatively high throughput in planta functional assay system for Triticeae anther-specific gene promoters. There remains a vast gap in our knowledge of the promoter cis-acting elements responsible for the transcriptional regulation of Triticeae anther-specific genes. In an attempt to identify conserved cis-elements, 14 pollen-specific and 8 tapetum-specific Triticeae putative promoter sequences were analyzed using different promoter sequence analysis tools. Several cis-elements were found to be enriched in these sequences and their possible role in gene expression regulation in the anther is discussed. Despite the fact that potential cis-acting elements can be identified within putative promoter sequence datasets, determining whether particular promoter sequences can in fact direct proper tissue-specific and developmental gene expression still needs to be confirmed via functional assays preferably performed in closely related plants. Transgenic functional assays with Triticeae species remain challenging and Brachypodium distachyon may represent a suitable alternative. The promoters of the triticale pollen-specific genes group 3 pollen allergen (PAL3) and group 4 pollen allergen (PAL4), as well as the tapetum-specific genes chalcone synthase-like 1 (CHSL1), from wheat and cysteine-rich protein 1 (CRP1) from triticale were fused to the green fluorescent protein gene (GFP) and analyzed in transgenic Brachypodium. This report demonstrates that this model species could serve to accelerate the functional analysis of Triticeae anther-specific gene promoters.
Main conclusion In this report, we demonstrate that Brachypodium distachyon could serve as a relatively high throughput in planta functional assay system for Triticeae anther-specific gene promoters. There remains a vast gap in our knowledge of the promoter cis -acting elements responsible for the transcriptional regulation of Triticeae anther-specific genes. In an attempt to identify conserved cis -elements, 14 pollen-specific and 8 tapetum-specific Triticeae putative promoter sequences were analyzed using different promoter sequence analysis tools. Several cis -elements were found to be enriched in these sequences and their possible role in gene expression regulation in the anther is discussed. Despite the fact that potential cis -acting elements can be identified within putative promoter sequence datasets, determining whether particular promoter sequences can in fact direct proper tissue-specific and developmental gene expression still needs to be confirmed via functional assays preferably performed in closely related plants. Transgenic functional assays with Triticeae species remain challenging and Brachypodium distachyon may represent a suitable alternative. The promoters of the triticale pollen-specific genes group 3 pollen allergen ( PAL3 ) and group 4 pollen allergen ( PAL4 ), as well as the tapetum-specific genes chalcone synthase - like 1 ( CHSL1 ), from wheat and cysteine - rich protein 1 ( CRP1 ) from triticale were fused to the green fluorescent protein gene ( GFP ) and analyzed in transgenic Brachypodium. This report demonstrates that this model species could serve to accelerate the functional analysis of Triticeae anther-specific gene promoters.
There remains a vast gap in our knowledge of the promoter cis-acting elements responsible for the transcriptional regulation of Triticeae anther-specific genes. In an attempt to identify conserved cis-elements, 14 pollen-specific and 8 tapetum-specific Triticeae putative promoter sequences were analyzed using different promoter sequence analysis tools. Several cis-elements were found to be enriched in these sequences and their possible role in gene expression regulation in the anther is discussed. Despite the fact that potential cis-acting elements can be identified within putative promoter sequence datasets, determining whether particular promoter sequences can in fact direct proper tissue-specific and developmental gene expression still needs to be confirmed via functional assays preferably performed in closely related plants. Transgenic functional assays with Triticeae species remain challenging and Brachypodium distachyon may represent a suitable alternative. The promoters of the triticale pollen-specific genes group 3 pollen allergen (PAL3) and group 4 pollen allergen (PAL4), as well as the tapetum-specific genes chalcone synthase-like 1 (CHSL1), from wheat and cysteine-rich protein 1 (CRP1) from triticale were fused to the green fluorescent protein gene (GFP) and analyzed in transgenic Brachypodium. This report demonstrates that this model species could serve to accelerate the functional analysis of Triticeae anther-specific gene promoters.
Main conclusion In this report, we demonstrate that Brachypodium distachyon could serve as a relatively high throughput in planta functional assay system for Triticeae anther-specific gene promoters. There remains a vast gap in our knowledge of the promoter cis-acting elements responsible for the transcriptional regulation of Triticeae anther-specific genes. In an attempt to identify conserved cis-elements, 14 pollen-specific and 8 tapetum-specific Triticeae putative promoter sequences were analyzed using different promoter sequence analysis tools. Several cis-elements were found to be enriched in these sequences and their possible role in gene expression regulation in the anther is discussed. Despite the fact that potential cis-acting elements can be identified within putative promoter sequence datasets, determining whether particular promoter sequences can in fact direct proper tissue-specific and developmental gene expression still needs to be confirmed via functional assays preferably performed in closely related plants. Transgenic functional assays with Triticeae species remain challenging and Brachypodium distachyon may represent a suitable alternative. The promoters of the triticale pollen-specific genes group 3 pollen allergen (PAL3) and group 4 pollen allergen (PAL4), as well as the tapetum-specific genes chalcone synthase-like 1 (CHSL1), from wheat and cysteine-rich protein 1 (CRP1) from triticale were fused to the green fluorescent protein gene (GFP) and analyzed in transgenic Brachypodium. This report demonstrates that this model species could serve to accelerate the functional analysis of Triticeae anther-specific gene promoters.
Author Gleddie, Steve
Robert, Laurian S.
Zaidi, Mohsin A.
Wu, Shaobo
O’Leary, Stephen J. B.
Eudes, François
Chabot, Denise
Laroche, André
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/27787603$$D View this record in MEDLINE/PubMed
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CitedBy_id crossref_primary_10_3390_ijms19072009
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Keywords Tapetum
Pollen
Promoter analysis
Wheat
Green fluorescent protein
Triticale
Language English
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PublicationSubtitle An International Journal of Plant Biology
PublicationTitle Planta
PublicationTitleAbbrev Planta
PublicationTitleAlternate Planta
PublicationYear 2017
Publisher Springer Science + Business Media
Springer Berlin Heidelberg
Springer Nature B.V
Publisher_xml – name: Springer Science + Business Media
– name: Springer Berlin Heidelberg
– name: Springer Nature B.V
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SSID ssj0014377
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Snippet There remains a vast gap in our knowledge of the promoter cis-acting elements responsible for the transcriptional regulation of Triticeae anther-specific...
Main conclusion In this report, we demonstrate that Brachypodium distachyon could serve as a relatively high throughput in planta functional assay system for...
In this report, we demonstrate that Brachypodium distachyon could serve as a relatively high throughput in planta functional assay system for Triticeae...
Main conclusion In this report, we demonstrate that Brachypodium distachyon could serve as a relatively high throughput in planta functional assay system for...
MAIN CONCLUSIONIn this report, we demonstrate that Brachypodium distachyon could serve as a relatively high throughput in planta functional assay system for...
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SubjectTerms Acyltransferases - genetics
Acyltransferases - metabolism
Agriculture
Allergens
Biomedical and Life Sciences
Brachypodium
Brachypodium - genetics
Brachypodium distachyon
Ecology
Flowers - genetics
Forestry
Gene Expression Regulation, Plant
High-Throughput Nucleotide Sequencing
Life Sciences
ORIGINAL ARTICLE
Plant Proteins - genetics
Plant Proteins - metabolism
Plant Sciences
Plants, Genetically Modified
Poaceae - genetics
Pollen
Pollen - genetics
Pollen - growth & development
Promoter Regions, Genetic
Triticeae
Triticum aestivum
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Title Investigating Triticeae anther gene promoter activity in transgenic Brachypodium distachyon
URI https://www.jstor.org/stable/48726649
https://link.springer.com/article/10.1007/s00425-016-2612-5
https://www.ncbi.nlm.nih.gov/pubmed/27787603
https://www.proquest.com/docview/1865257789
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Volume 245
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