Gene Network Analysis for Osteoporosis, Sarcopenia, Diabetes, and Obesity in Human Mesenchymal Stromal Cells

• Published in: Genes Vol. 13; no. 3; p. 459
• Main Authors: Jin, Yilan, Kim, Dowan, Choi, Yong Jun, Song, Insun, Chung, Yoon-Sok
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 03-03-2022; MDPI
• Subjects: Bone density; Bone marrow; Bone Marrow Cells - metabolism; Bone remodeling; Cardiovascular disease; Diabetes; Diabetes mellitus; Diabetes Mellitus - metabolism; Energy metabolism; Fractures; Gene expression; Gene Regulatory Networks; Genomes; Humans; Mesenchymal Stem Cells; Mesenchyme; Obesity; Obesity - genetics; Obesity - metabolism; Osteoblastogenesis; Osteoclastogenesis; Osteogenesis - genetics; Osteoporosis; Osteoporosis - genetics; Patients; Proteins; Sarcopenia; Sarcopenia - genetics; Sarcopenia - metabolism; Software; Statistical analysis; Stromal cells; United States > US; osteoporosis; gene network analysis; mesenchymal stromal cells
• ISSN: 2073-4425; 2073-4425
• DOI: 10.3390/genes13030459

The systemic gene interactions that occur during osteoporosis and their underlying mechanisms remain to be determined. To this end, mesenchymal stromal cells (MSCs) were analyzed from bone marrow samples collected from healthy individuals (
= 5) and patients with osteoporosis (
= 5). A total of 120 osteoporosis-related genes were identified using RNA-sequencing (RNA-seq) and Ingenuity Pathway Analysis (IPA) software. In order to analyze these genes, we constructed a heatmap of one-way hierarchical clustering and grouped the gene expression patterns of the samples. The MSCs from one control participant showed a similar expression pattern to that observed in the MSCs of three patients with osteoporosis, suggesting that the differentiating genes might be important genetic determinants of osteoporosis. Then, we selected the top 38 genes based on fold change and expression, excluding osteoporosis-related genes from the control participant. We identified a network among the top 38 genes related to osteoblast and osteoclast differentiation, bone remodeling, osteoporosis, and sarcopenia using the Molecule Activity Predictor program. Among them, 25 genes were essential systemic genes involved in osteoporosis. Furthermore, we identified 24 genes also associated with diabetes and obesity, among which 10 genes were involved in a network related to bone and energy metabolism. The study findings may have implications for the treatment and prevention of osteoporosis.