Stenotrophomonas sp. SRS1 promotes growth of Arabidopsis and tomato plants under salt stress conditions

Aims Plant Growth-Promoting Rhizobacteria (PGPR) support plant growth by alleviating plant stresses, among which those triggered by saline soils. We isolated Stenotrophomonas sp. SRS1 from salt-resistant Carex distans (distant sedge) roots to understand how this growth promotion was enabled and whet...

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Published in:	Plant and soil Vol. 473; no. 1-2; pp. 547 - 571
Main Authors:	Manh Tuong, Ho, Garcia Mendez, Sonia, Vandecasteele, Michiel, Willems, Anne, Luo, Dexian, Beirinckx, Stien, Goormachtig, Sofie
Format:	Journal Article
Language:	English
Published:	Cham Springer International Publishing 01-04-2022 Springer Springer Nature B.V
Subjects:	Abscisic acid Agriculture Analysis Arabidopsis Arabidopsis thaliana Bacteria Biomedical and Life Sciences Carex distans Ecology Gene expression Genes Genetic aspects Genomes Genomics Growth Identification and classification Inoculation Life Sciences Microfluidics Plant genetics Plant growth Plant Physiology Plant Sciences Regular Article Saline soils Salinity tolerance Salt stress (Botany) Salts Sand Soil Science & Conservation Soils, Salts in Solanum lycopersicum Stenotrophomonas Strain Tomatoes Belgium Salt tolerance Plant growth-promoting bacteria Auxin Arabidopsis Root endosphere Genomics Mutant qRT-PCR PGPR Tomato
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Abstract	Aims Plant Growth-Promoting Rhizobacteria (PGPR) support plant growth by alleviating plant stresses, among which those triggered by saline soils. We isolated Stenotrophomonas sp. SRS1 from salt-resistant Carex distans (distant sedge) roots to understand how this growth promotion was enabled and whether an active contribution of the bacteria and/or plant was required. Methods Various growth assays were used to analyze the effect of bacterial inoculation on Arabidopsis thaliana and Solanum lycopersicum (cherry tomato MicroTom) growth. Furthermore, droplet microfluidics, bacterial genome mining, and bacterial and plant gene expression analysis combined with plant mutant analysis were used for in-depth analysis. Results SRS1 application enhanced plant growth in both saline and nonsaline environments. The fresh weight of SRS1-inoculated plants was higher than that of noninoculated plants, whereas the fresh weight ratio between SRS1-inoculated and noninoculated plants differed whether the plants were grown on agar plates, white sand or in soil. We demonstrated that the strain grew well in high salt-containing media and that, besides plant-growth-promotion-related genes, the bacterium contained various active stress genes. Interestingly, inoculation with the strain increased the induction of plant genes related to abscisic acid and auxin signaling pathways under saline conditions. Conclusions SRS1 inoculation promoted the growth of Arabidopsis and MicroTom tomato under saline and nonsaline conditions, also when the plants were grown in white sand and potting soil. Overall, genetic traits related to stress alleviation, derived from both the bacteria and the plants, play a crucial role in the impact of this novel PGPR strain on plant performance.
AbstractList	Aims Plant Growth-Promoting Rhizobacteria (PGPR) support plant growth by alleviating plant stresses, among which those triggered by saline soils. We isolated Stenotrophomonas sp. SRS1 from salt-resistant Carex distans (distant sedge) roots to understand how this growth promotion was enabled and whether an active contribution of the bacteria and/or plant was required. Methods Various growth assays were used to analyze the effect of bacterial inoculation on Arabidopsis thaliana and Solanum lycopersicum (cherry tomato MicroTom) growth. Furthermore, droplet microfluidics, bacterial genome mining, and bacterial and plant gene expression analysis combined with plant mutant analysis were used for in-depth analysis. Results SRS1 application enhanced plant growth in both saline and nonsaline environments. The fresh weight of SRS1-inoculated plants was higher than that of noninoculated plants, whereas the fresh weight ratio between SRS1-inoculated and noninoculated plants differed whether the plants were grown on agar plates, white sand or in soil. We demonstrated that the strain grew well in high salt-containing media and that, besides plant-growth-promotion-related genes, the bacterium contained various active stress genes. Interestingly, inoculation with the strain increased the induction of plant genes related to abscisic acid and auxin signaling pathways under saline conditions. Conclusions SRS1 inoculation promoted the growth of Arabidopsis and MicroTom tomato under saline and nonsaline conditions, also when the plants were grown in white sand and potting soil. Overall, genetic traits related to stress alleviation, derived from both the bacteria and the plants, play a crucial role in the impact of this novel PGPR strain on plant performance. Aims Plant Growth-Promoting Rhizobacteria (PGPR) support plant growth by alleviating plant stresses, among which those triggered by saline soils. We isolated Stenotrophomonas sp. SRS1 from salt-resistant Carex distans (distant sedge) roots to understand how this growth promotion was enabled and whether an active contribution of the bacteria and/or plant was required. Methods Various growth assays were used to analyze the effect of bacterial inoculation on Arabidopsis thaliana and Solanum lycopersicum (cherry tomato MicroTom) growth. Furthermore, droplet microfluidics, bacterial genome mining, and bacterial and plant gene expression analysis combined with plant mutant analysis were used for in-depth analysis. Results SRS1 application enhanced plant growth in both saline and nonsaline environments. The fresh weight of SRS1-inoculated plants was higher than that of noninoculated plants, whereas the fresh weight ratio between SRS1-inoculated and noninoculated plants differed whether the plants were grown on agar plates, white sand or in soil. We demonstrated that the strain grew well in high salt-containing media and that, besides plant-growth-promotion-related genes, the bacterium contained various active stress genes. Interestingly, inoculation with the strain increased the induction of plant genes related to abscisic acid and auxin signaling pathways under saline conditions. Conclusions SRS1 inoculation promoted the growth of Arabidopsis and MicroTom tomato under saline and nonsaline conditions, also when the plants were grown in white sand and potting soil. Overall, genetic traits related to stress alleviation, derived from both the bacteria and the plants, play a crucial role in the impact of this novel PGPR strain on plant performance. AimsPlant Growth-Promoting Rhizobacteria (PGPR) support plant growth by alleviating plant stresses, among which those triggered by saline soils. We isolated Stenotrophomonas sp. SRS1 from salt-resistant Carex distans (distant sedge) roots to understand how this growth promotion was enabled and whether an active contribution of the bacteria and/or plant was required.MethodsVarious growth assays were used to analyze the effect of bacterial inoculation on Arabidopsis thaliana and Solanum lycopersicum (cherry tomato MicroTom) growth. Furthermore, droplet microfluidics, bacterial genome mining, and bacterial and plant gene expression analysis combined with plant mutant analysis were used for in-depth analysis.ResultsSRS1 application enhanced plant growth in both saline and nonsaline environments. The fresh weight of SRS1-inoculated plants was higher than that of noninoculated plants, whereas the fresh weight ratio between SRS1-inoculated and noninoculated plants differed whether the plants were grown on agar plates, white sand or in soil. We demonstrated that the strain grew well in high salt-containing media and that, besides plant-growth-promotion-related genes, the bacterium contained various active stress genes. Interestingly, inoculation with the strain increased the induction of plant genes related to abscisic acid and auxin signaling pathways under saline conditions.ConclusionsSRS1 inoculation promoted the growth of Arabidopsis and MicroTom tomato under saline and nonsaline conditions, also when the plants were grown in white sand and potting soil. Overall, genetic traits related to stress alleviation, derived from both the bacteria and the plants, play a crucial role in the impact of this novel PGPR strain on plant performance.
Audience	Academic
Author	Goormachtig, Sofie Luo, Dexian Garcia Mendez, Sonia Vandecasteele, Michiel Manh Tuong, Ho Willems, Anne Beirinckx, Stien
Author_xml	– sequence: 1 givenname: Ho orcidid: 0000-0002-0214-7757 surname: Manh Tuong fullname: Manh Tuong, Ho organization: Department of Plant Biotechnology and Bioinformatics, Ghent University, Center for Plant Systems Biology, VIB, Institute of Biotechnology, Vietnam Academy of Science and Technology – sequence: 2 givenname: Sonia orcidid: 0000-0002-1140-9237 surname: Garcia Mendez fullname: Garcia Mendez, Sonia organization: Department of Plant Biotechnology and Bioinformatics, Ghent University, Center for Plant Systems Biology, VIB, Department of Biochemistry and Microbiology, Faculty of Sciences, Ghent University – sequence: 3 givenname: Michiel orcidid: 0000-0001-7486-7748 surname: Vandecasteele fullname: Vandecasteele, Michiel organization: Department of Plant Biotechnology and Bioinformatics, Ghent University, Center for Plant Systems Biology, VIB – sequence: 4 givenname: Anne orcidid: 0000-0002-8421-2881 surname: Willems fullname: Willems, Anne organization: Department of Biochemistry and Microbiology, Faculty of Sciences, Ghent University – sequence: 5 givenname: Dexian surname: Luo fullname: Luo, Dexian organization: Department of Plant Biotechnology and Bioinformatics, Ghent University, Center for Plant Systems Biology, VIB, Department of Biochemistry and Biophysics, Texas A&M University – sequence: 6 givenname: Stien orcidid: 0000-0002-4830-3225 surname: Beirinckx fullname: Beirinckx, Stien organization: Department of Plant Biotechnology and Bioinformatics, Ghent University, Center for Plant Systems Biology, VIB – sequence: 7 givenname: Sofie orcidid: 0000-0001-6195-9889 surname: Goormachtig fullname: Goormachtig, Sofie email: sofie.goormachtig@psb.vib-ugent.be organization: Department of Plant Biotechnology and Bioinformatics, Ghent University, Center for Plant Systems Biology, VIB
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Keywords	Salt tolerance Plant growth-promoting bacteria Auxin Arabidopsis Root endosphere Genomics Mutant qRT-PCR PGPR Tomato
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Snippet	Aims Plant Growth-Promoting Rhizobacteria (PGPR) support plant growth by alleviating plant stresses, among which those triggered by saline soils. We isolated... Aims Plant Growth-Promoting Rhizobacteria (PGPR) support plant growth by alleviating plant stresses, among which those triggered by saline soils. We isolated... AimsPlant Growth-Promoting Rhizobacteria (PGPR) support plant growth by alleviating plant stresses, among which those triggered by saline soils. We isolated...
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SubjectTerms	Abscisic acid Agriculture Analysis Arabidopsis Arabidopsis thaliana Bacteria Biomedical and Life Sciences Carex distans Ecology Gene expression Genes Genetic aspects Genomes Genomics Growth Identification and classification Inoculation Life Sciences Microfluidics Plant genetics Plant growth Plant Physiology Plant Sciences Regular Article Saline soils Salinity tolerance Salt stress (Botany) Salts Sand Soil Science & Conservation Soils, Salts in Solanum lycopersicum Stenotrophomonas Strain Tomatoes
Title	Stenotrophomonas sp. SRS1 promotes growth of Arabidopsis and tomato plants under salt stress conditions
URI	https://link.springer.com/article/10.1007/s11104-022-05304-9 https://www.proquest.com/docview/2652414946
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