Physics-informed deep generative learning for quantitative assessment of the retina

• Published in: Nature communications Vol. 15; no. 1; pp. 6859 - 14
• Main Authors: Brown, Emmeline E., Guy, Andrew A., Holroyd, Natalie A., Sweeney, Paul W., Gourmet, Lucie, Coleman, Hannah, Walsh, Claire, Markaki, Athina E., Shipley, Rebecca, Rajendram, Ranjan, Walker-Samuel, Simon
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 10-08-2024; Nature Publishing Group; Nature Portfolio
• Subjects: 631/114/1305; 631/114/2397; 631/114/794; Algorithms; Biophysics; Blood; Blood vessels; Contrast agents; Datasets; Deep Learning; Diabetes mellitus; Diabetic Retinopathy - diagnosis; Disease; Disease detection; Eye diseases; Generative adversarial networks; Human performance; Humanities and Social Sciences; Humans; Image Processing, Computer-Assisted - methods; Labeling; Macular degeneration; Macular Degeneration - pathology; Medical imaging; multidisciplinary; Ophthalmology; Optics; Physics; Retina; Retina - diagnostic imaging; Retinal Vessels - diagnostic imaging; Retinopathy; Science; Science (multidisciplinary); Segmentation; Simulation; Tomography; Veins & arteries
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-024-50911-y

Disruption of retinal vasculature is linked to various diseases, including diabetic retinopathy and macular degeneration, leading to vision loss. We present here a novel algorithmic approach that generates highly realistic digital models of human retinal blood vessels, based on established biophysical principles, including fully-connected arterial and venous trees with a single inlet and outlet. This approach, using physics-informed generative adversarial networks (PI-GAN), enables the segmentation and reconstruction of blood vessel networks with no human input and which out-performs human labelling. Segmentation of DRIVE and STARE retina photograph datasets provided near state-of-the-art vessel segmentation, with training on only a small (
n
 = 100) simulated dataset. Our findings highlight the potential of PI-GAN for accurate retinal vasculature characterization, with implications for improving early disease detection, monitoring disease progression, and improving patient care.
Analysis of retinal vasculature is limited by the availability of annotated datasets. Here, the authors show a method for generating synthetic retinal vessel data which is not statistically significantly different from real clinical data.