The diversity of Pseudomonas species isolated from fish farms in Turkey
The prevalence of Pseudomonas species in freshwater fish and water from aquaculture farms in Turkey was determined on a monthly basis, in the period covering 2013–2017 and two seasons of 2018. The farms included in the study were located in six different regions of Turkey. A total of 90 Pseudomonas...
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| Published in: | Aquaculture Vol. 535; p. 736369 |
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| Format: | Journal Article |
| Language: | English |
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Elsevier B.V
30-03-2021
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| Abstract | The prevalence of Pseudomonas species in freshwater fish and water from aquaculture farms in Turkey was determined on a monthly basis, in the period covering 2013–2017 and two seasons of 2018. The farms included in the study were located in six different regions of Turkey. A total of 90 Pseudomonas strains were isolated from water and diseased and healthy fish, and were classified under 20 species. The phenotypic characterization of the strains was based on oxidase and catalase activities, haemolysis, tolerance to temperature and sodium chloride, the production of fluorescent pigments and antibiotic resistance spectra. The phylogenetic identification of the 90 isolates was performed by a 4-gene multilocus sequence analysis, based on the partial sequencing of the 16S rRNA, gyrB, rpoB and rpoD genes. This is the first report on the isolation of several Pseudomonas species, namely, P. brenneri, P. defensor, P. haemolytica, P. lactis, P. lundensis, P. lurida, P. mandelii, P. meridiana, P. migulae, P. proteolytica, P. simiae, and P. weihenstephanensis, from freshwater salmonid fish. Two of these species, P. haemolytica and P. lactis have been isolated for the first time from fish farms, an environment quite different from their original isolation source, raw milk. Furthermore, seven putative new Pseudomonas species were isolated from water and farmed rainbow trout. During the 2013 to 2018 period, several Pseudomonas species were detected to have spread from the Aegean and Central Anatolia regions to the Eastern Anatolia and Black Sea regions.
•Ninety Pseudomonas strains isolated from water fish, were classified under 20 species.•First report on the isolation of 12 Pseudomonas species from freshwater salmonid fish•Seven putative new Pseudomonas species isolated from water and farmed rainbow trouts |
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| AbstractList | The prevalence of Pseudomonas species in freshwater fish and water from aquaculture farms in Turkey was determined on a monthly basis, in the period covering 2013–2017 and two seasons of 2018. The farms included in the study were located in six different regions of Turkey. A total of 90 Pseudomonas strains were isolated from water and diseased and healthy fish, and were classified under 20 species. The phenotypic characterization of the strains was based on oxidase and catalase activities, haemolysis, tolerance to temperature and sodium chloride, the production of fluorescent pigments and antibiotic resistance spectra. The phylogenetic identification of the 90 isolates was performed by a 4-gene multilocus sequence analysis, based on the partial sequencing of the 16S rRNA, gyrB, rpoB and rpoD genes. This is the first report on the isolation of several Pseudomonas species, namely, P. brenneri, P. defensor, P. haemolytica, P. lactis, P. lundensis, P. lurida, P. mandelii, P. meridiana, P. migulae, P. proteolytica, P. simiae, and P. weihenstephanensis, from freshwater salmonid fish. Two of these species, P. haemolytica and P. lactis have been isolated for the first time from fish farms, an environment quite different from their original isolation source, raw milk. Furthermore, seven putative new Pseudomonas species were isolated from water and farmed rainbow trout. During the 2013 to 2018 period, several Pseudomonas species were detected to have spread from the Aegean and Central Anatolia regions to the Eastern Anatolia and Black Sea regions.
•Ninety Pseudomonas strains isolated from water fish, were classified under 20 species.•First report on the isolation of 12 Pseudomonas species from freshwater salmonid fish•Seven putative new Pseudomonas species isolated from water and farmed rainbow trouts |
| ArticleNumber | 736369 |
| Author | Altun, Soner Saticioglu, Izzet Burcin Ajmi, Nihed Mulet, Magdalena Lalucat, Jorge Duman, Muhammed García-Valdés, Elena Ozdemir, Burak |
| Author_xml | – sequence: 1 givenname: Muhammed surname: Duman fullname: Duman, Muhammed organization: Department of Aquatic Animal Diseases, Faculty of Veterinary Medicine, Bursa Uludag University, 16059 Bursa, Turkey – sequence: 2 givenname: Magdalena surname: Mulet fullname: Mulet, Magdalena organization: Microbiologia, Departament de Biologia, Edifici Guillem Colom, Universitat de les Illes Balears, Campus UIB, 07122 Palma de Mallorca, Spain – sequence: 3 givenname: Soner surname: Altun fullname: Altun, Soner organization: Department of Aquatic Animal Diseases, Faculty of Veterinary Medicine, Bursa Uludag University, 16059 Bursa, Turkey – sequence: 4 givenname: Izzet Burcin surname: Saticioglu fullname: Saticioglu, Izzet Burcin organization: Department of Aquatic Animal Diseases, Faculty of Veterinary Medicine, Erciyes University, 38280 Kayseri, Turkey – sequence: 5 givenname: Burak surname: Ozdemir fullname: Ozdemir, Burak organization: Department of Aquatic Animal Diseases, Faculty of Veterinary Medicine, Bursa Uludag University, 16059 Bursa, Turkey – sequence: 6 givenname: Nihed surname: Ajmi fullname: Ajmi, Nihed organization: Department of Aquatic Animal Diseases, Faculty of Veterinary Medicine, Bursa Uludag University, 16059 Bursa, Turkey – sequence: 7 givenname: Jorge surname: Lalucat fullname: Lalucat, Jorge organization: Microbiologia, Departament de Biologia, Edifici Guillem Colom, Universitat de les Illes Balears, Campus UIB, 07122 Palma de Mallorca, Spain – sequence: 8 givenname: Elena surname: García-Valdés fullname: García-Valdés, Elena email: elena.garciavaldes@uib.es organization: Microbiologia, Departament de Biologia, Edifici Guillem Colom, Universitat de les Illes Balears, Campus UIB, 07122 Palma de Mallorca, Spain |
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| Keywords | Water Pseudomonas Onchorhynchus mykiss Rainbow trout Aquaculture |
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