Nanopore detection of double stranded DNA using a track-etched polycarbonate membrane
We investigate the resistive-pulse sensing of 50-bp DNA using track-etched polycarbonate (PC) nanopores and show the translocation dynamics originating from the electrophoretic transport of DNAs. Conically shaped PC nanopore membranes have been prepared with asymmetric chemical etching technique. We...
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| Published in: | Talanta (Oxford) Vol. 144; pp. 268 - 274 |
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01-11-2015
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| Abstract | We investigate the resistive-pulse sensing of 50-bp DNA using track-etched polycarbonate (PC) nanopores and show the translocation dynamics originating from the electrophoretic transport of DNAs. Conically shaped PC nanopore membranes have been prepared with asymmetric chemical etching technique. We show the potential and concentration dependence of DNA translocation through a PC nanopore. We find that the translocation of DNA scales linearly with both potential and concentration. Additionally, the threshold potential is determined to complete the translocation. Finally, by investigating the current-pulse amplitudes of nanopores with different tip sizes, we show that the nanopore size can be successfully used to distinguish the DNA molecules. These results suggest great promise for the sensing of short DNAs and understanding the dynamics of the translocation process using chemically-etched PC nanopores.
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•Track-etched polycarbonate membranes were used to fabricate nanopores.•Asymmetric chemical etching has been performed to shape the nanopore in conical shape.•50-bp DNAs have been used as a model molecule.•Potential and concentration dependence of short DNA translocation have been shown. |
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| AbstractList | We investigate the resistive-pulse sensing of 50-bp DNA using track-etched polycarbonate (PC) nanopores and show the translocation dynamics originating from the electrophoretic transport of DNAs. Conically shaped PC nanopore membranes have been prepared with asymmetric chemical etching technique. We show the potential and concentration dependence of DNA translocation through a PC nanopore. We find that the translocation of DNA scales linearly with both potential and concentration. Additionally, the threshold potential is determined to complete the translocation. Finally, by investigating the current-pulse amplitudes of nanopores with different tip sizes, we show that the nanopore size can be successfully used to distinguish the DNA molecules. These results suggest great promise for the sensing of short DNAs and understanding the dynamics of the translocation process using chemically-etched PC nanopores. We investigate the resistive-pulse sensing of 50-bp DNA using track-etched polycarbonate (PC) nanopores and show the translocation dynamics originating from the electrophoretic transport of DNAs. Conically shaped PC nanopore membranes have been prepared with asymmetric chemical etching technique. We show the potential and concentration dependence of DNA translocation through a PC nanopore. We find that the translocation of DNA scales linearly with both potential and concentration. Additionally, the threshold potential is determined to complete the translocation. Finally, by investigating the current-pulse amplitudes of nanopores with different tip sizes, we show that the nanopore size can be successfully used to distinguish the DNA molecules. These results suggest great promise for the sensing of short DNAs and understanding the dynamics of the translocation process using chemically-etched PC nanopores. [Display omitted] •Track-etched polycarbonate membranes were used to fabricate nanopores.•Asymmetric chemical etching has been performed to shape the nanopore in conical shape.•50-bp DNAs have been used as a model molecule.•Potential and concentration dependence of short DNA translocation have been shown. |
| Author | San, Nevim Kaya, Dila Kececi, Kaan |
| Author_xml | – sequence: 1 givenname: Kaan surname: Kececi fullname: Kececi, Kaan email: kaan.kececi@medeniyet.edu.tr organization: Istanbul Medeniyet University, Department of Chemistry, Uskudar 34700, Istanbul – sequence: 2 givenname: Nevim surname: San fullname: San, Nevim organization: Yildiz Technical University, Department of Chemistry, Esenler 34220, Istanbul – sequence: 3 givenname: Dila surname: Kaya fullname: Kaya, Dila organization: Yildiz Technical University, Department of Chemistry, Esenler 34220, Istanbul |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26452821$$D View this record in MEDLINE/PubMed |
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| Keywords | Track-etched polymer membrane Resistive-pulse Conically shaped nanopore DNA Biosensing |
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| Snippet | We investigate the resistive-pulse sensing of 50-bp DNA using track-etched polycarbonate (PC) nanopores and show the translocation dynamics originating from... |
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| SubjectTerms | Biosensing Biosensing Techniques Conically shaped nanopore DNA DNA - analysis DNA - chemistry Formates - chemistry Membranes, Artificial Nanopores Polycarboxylate Cement - chemistry Potassium Chloride - chemistry Resistive-pulse Sodium Hydroxide - chemistry Track-etched polymer membrane |
| Title | Nanopore detection of double stranded DNA using a track-etched polycarbonate membrane |
| URI | https://dx.doi.org/10.1016/j.talanta.2015.06.005 https://www.ncbi.nlm.nih.gov/pubmed/26452821 https://search.proquest.com/docview/1721361298 |
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