The application of Gaussian processes in the prediction of percutaneous absorption

• Published in: Journal of pharmacy and pharmacology Vol. 61; no. 9; pp. 1147 - 1153
• Main Authors: Moss, Gary P., Sun, Yi, Prapopoulou, Maria, Davey, Neil, Adams, Rod, Pugh, W. John, Brown, Marc B.
• Format: Journal Article
• Language: English
• Published: Oxford, UK Blackwell Publishing Ltd 01-09-2009
• Subjects: Databases as Topic; Forecasting - methods; Gaussian process; Humans; Linear Models; machine learning methods; Nonlinear Dynamics; Normal Distribution; percutaneous absorption; Principal Component Analysis; Quantitative Structure-Activity Relationship; quantitative structure-permeability relationships; Skin - drug effects; Skin Absorption
• ISSN: 0022-3573; 2042-7158
• DOI: 10.1211/jpp.61.09.0003

Objectives The aim was to assess mathematically the nature of a skin permeability dataset and to determine the utility of Gaussian processes in developing a predictive model for skin permeability, comparing it with existing methods for deriving predictive models.
Methods Principal component analysis was carried out in order to determine the nature of the dataset. MatLab software was used to assess the performance of Gaussian process, single linear networks (SLN) and quantitative structure‐permeability relationships (QSPRs) using a range of statistical measures.
Key findings Principal component analysis showed that the dataset is inherently nonlinear. The Gaussian process model yielded a predictive model that provides a significantly more accurate estimate of skin absorption than previous models, particularly QSPRs (which were consistently worse than Gaussian process or SLN models), and does so across a wider range of molecular properties. Gaussian process models appear particularly capable of providing excellent predictions where previous studies have shown QSPRs to fail, such as where penetrants have high log P and high molecular weight.
Conclusions A non‐linear approach was more appropriate than QSPRs or SLNs for the analysis of the dataset employed herein, as the prediction and confidence values in the prediction given by the Gaussian process are better than with other methods examined. Gaussian process provides a novel way of analysing skin absorption data that is substantially more accurate, statistically robust and reflective of our empirical understanding of skin absorption than the QSPR methods so far applied to skin absorption.