Use of ribosomal proteins as biomarkers for identification of Flavobacterium psychrophilum by MALDI-TOF mass spectrometry

• Published in: Journal of proteomics Vol. 170; pp. 59 - 69
• Main Authors: Fernández-Álvarez, Clara, Torres-Corral, Yolanda, Santos, Ysabel
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 06-01-2018
• Subjects: Bacterial cold-water disease (BCWD); Bacterial Proteins - metabolism; Biomarkers; Flavobacterium - classification; Flavobacterium - metabolism; Flavobacterium psychrophilum; MALDI-TOF-MS; Ribosomal proteins; Ribosomal Proteins - metabolism; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Flavobacterium psychrophilum; Biomarkers; MALDI-TOF-MS; Bacterial cold-water disease (BCWD); Ribosomal proteins
• ISSN: 1874-3919; 1876-7737
• DOI: 10.1016/j.jprot.2017.09.007

Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF-MS) is a rapid methodology for identification of bacteria that is increasingly used in diagnostic laboratories. This work aimed at evaluating the potential of MALDI-TOF-MS for identification of the main serotypes of Flavobacterium psychrophilum isolated from salmonids, and its discrimination from closely related Flavobacterium spp. A mass spectra library was constructed by analysing 70 F. psychrophilum strains representing the serotypes O1, O2a, O2b and O3, including reference and clinical isolates. Peak mass lists were examined using the Mass-Up software for the detection of potential biomarkers, similarity and cluster analysis. Fourteen species-identifying biomarkers were detected in all the F. psychrophilum isolates tested, moreover, sets of serotype-identifying biomarkers ions were selected. F. psychrophilum-specific biomarkers were identified as ribosomal proteins by matching with protein databases. Furthermore, sequence variation corresponding to amino acid exchanges in several biomarker proteins were tentatively assigned. Closely related Flavobacterium species (F. flevense, F. succinicans, F. columnare, F. branchiophilum and F. johnsoniae) could be differentiated from F. psychrophilum by defining species identifying biomarkers and hierarchical cluster analysis. These results demonstrated that MALDI-TOF spectrometry represents a powerful tool for an accurate identification of the fish pathogen F. psychrophilum as well as for epidemiological studies.
The results obtained in this study demonstrated that MALDI-TOF mass spectrometry represents a powerful tool that can be used by diagnostic laboratories for rapid identification of the fish pathogen Flavobacterium psychrophilum and its differentiation from other Flavobacterium-related species. Analysis of mass peak lists revealed the potential of the MALDI-TOF technique to identify epidemiologically important serotypes affecting salmonid fish. Furthermore, this study revealed the importance of the technique in the early and fast detection of bacterial pathogens, with the subsequent improvement in the health status and animal welfare and food safety in farmed fish.
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•Analysis by MALDI-TOF-MS of 70 Flavobacterium psychrophilum strains and 5 strains from other Flavobacterium species.•Analysis and processing of the mass spectra by using the Mass-Up software.•Identification of genus, species and serotype-identifying biomarkers.•Differentiation of Flavobacterium species through similarity and clustering analysis.•Relevant technique for the rapid detection of pathogens and the improvement of the health status and food safety of fish.