Antimicrobial susceptibility testing data analysis over 3 years at the Yaoundé General Hospital, Cameroon
Antimicrobial resistance (AMR) is a major health concern with high rates in low-income countries. Bacteriology laboratories sustain the fight against AMR by providing antibiotic susceptibility testing (AST) results to ensure appropriate therapies. These laboratories generate a lot of data, which are...
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Published in: | JAC-antimicrobial resistance Vol. 6; no. 2; p. dlae043 |
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Abstract | Antimicrobial resistance (AMR) is a major health concern with high rates in low-income countries. Bacteriology laboratories sustain the fight against AMR by providing antibiotic susceptibility testing (AST) results to ensure appropriate therapies. These laboratories generate a lot of data, which are usually used for prospective interventions. Our study conducted in a lower-middle-income hospital setting aimed to describe the profile of bacteria isolated from the specimens received over 3 years, assess their susceptibility profile and identify potential gaps or area of improvement from the analysis of our data.
Monthly data were retrieved from registers for all specimens received between January 2020 until December 2022. Data were compiled and analysed using the R and WHONET software.
Out of 3582 specimens received, 797 were culture positive (22.3%).
and
were frequently isolated (30.5% and 24.2%, respectively). AST results analysis showed high resistance of Gram-negative bacteria to penams and cephems, whereas low resistance was observed to carbapenems. Susceptibility to antibiotics based on the AWaRe antibiotic classification was variable. The bacteriological profile in the various types of specimen was established and rational information to design a therapeutic protocol adapted to our hospital setting was obtained.
AST results may not only be used for prospective guidance for treatment, but rather cumulative data analysis can contribute to design effective antibiotic prescriptions and improve general practices at the laboratory. This is, however, dependent on a good record-keeping, standardization of practices and collaboration between clinicians and laboratory scientists. |
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AbstractList | BackgroundAntimicrobial resistance (AMR) is a major health concern with high rates in low-income countries. Bacteriology laboratories sustain the fight against AMR by providing antibiotic susceptibility testing (AST) results to ensure appropriate therapies. These laboratories generate a lot of data, which are usually used for prospective interventions. Our study conducted in a lower-middle-income hospital setting aimed to describe the profile of bacteria isolated from the specimens received over 3 years, assess their susceptibility profile and identify potential gaps or area of improvement from the analysis of our data.MethodsMonthly data were retrieved from registers for all specimens received between January 2020 until December 2022. Data were compiled and analysed using the R and WHONET software.ResultsOut of 3582 specimens received, 797 were culture positive (22.3%). Escherichia coli and Klebsiella pneumoniae were frequently isolated (30.5% and 24.2%, respectively). AST results analysis showed high resistance of Gram-negative bacteria to penams and cephems, whereas low resistance was observed to carbapenems. Susceptibility to antibiotics based on the AWaRe antibiotic classification was variable. The bacteriological profile in the various types of specimen was established and rational information to design a therapeutic protocol adapted to our hospital setting was obtained.ConclusionsAST results may not only be used for prospective guidance for treatment, but rather cumulative data analysis can contribute to design effective antibiotic prescriptions and improve general practices at the laboratory. This is, however, dependent on a good record-keeping, standardization of practices and collaboration between clinicians and laboratory scientists. Antimicrobial resistance (AMR) is a major health concern with high rates in low-income countries. Bacteriology laboratories sustain the fight against AMR by providing antibiotic susceptibility testing (AST) results to ensure appropriate therapies. These laboratories generate a lot of data, which are usually used for prospective interventions. Our study conducted in a lower-middle-income hospital setting aimed to describe the profile of bacteria isolated from the specimens received over 3 years, assess their susceptibility profile and identify potential gaps or area of improvement from the analysis of our data. Monthly data were retrieved from registers for all specimens received between January 2020 until December 2022. Data were compiled and analysed using the R and WHONET software. Out of 3582 specimens received, 797 were culture positive (22.3%). and were frequently isolated (30.5% and 24.2%, respectively). AST results analysis showed high resistance of Gram-negative bacteria to penams and cephems, whereas low resistance was observed to carbapenems. Susceptibility to antibiotics based on the AWaRe antibiotic classification was variable. The bacteriological profile in the various types of specimen was established and rational information to design a therapeutic protocol adapted to our hospital setting was obtained. AST results may not only be used for prospective guidance for treatment, but rather cumulative data analysis can contribute to design effective antibiotic prescriptions and improve general practices at the laboratory. This is, however, dependent on a good record-keeping, standardization of practices and collaboration between clinicians and laboratory scientists. |
Author | Medi Sike, Christiane Ngaleu, Welysiane Toukam, Michel Nibeye, Yannick Mouliom Mouiche, Mohammed Moctar Nkoth, Abel Fils Mbopi-Keou, Francois-Xavier Ngogang, Marie Paule Mfouapon, Heroine Ekoume, Priscille Voundi, Esther Voundi Fonkoua, Marie Christine |
Author_xml | – sequence: 1 givenname: Marie Paule orcidid: 0000-0001-9996-8035 surname: Ngogang fullname: Ngogang, Marie Paule organization: Yaoundé General Hospital, Yaounde, Cameroon – sequence: 2 givenname: Abel Fils surname: Nkoth fullname: Nkoth, Abel Fils organization: Yaoundé General Hospital, Yaounde, Cameroon – sequence: 3 givenname: Welysiane surname: Ngaleu fullname: Ngaleu, Welysiane organization: Yaoundé General Hospital, Yaounde, Cameroon – sequence: 4 givenname: Heroine surname: Mfouapon fullname: Mfouapon, Heroine organization: Yaoundé General Hospital, Yaounde, Cameroon – sequence: 5 givenname: Priscille surname: Ekoume fullname: Ekoume, Priscille organization: Yaoundé General Hospital, Yaounde, Cameroon – sequence: 6 givenname: Yannick surname: Nibeye fullname: Nibeye, Yannick organization: Faculty of Medicine and Biomedical Sciences, Yaoundé I University, Yaounde, Cameroon – sequence: 7 givenname: Christiane surname: Medi Sike fullname: Medi Sike, Christiane organization: Faculty of Medicine and Biomedical Sciences, Yaoundé I University, Yaounde, Cameroon – sequence: 8 givenname: Esther Voundi surname: Voundi fullname: Voundi, Esther Voundi organization: Faculty of Medicine and Biomedical Sciences, Yaoundé I University, Yaounde, Cameroon – sequence: 9 givenname: Mohammed Moctar surname: Mouliom Mouiche fullname: Mouliom Mouiche, Mohammed Moctar organization: Infectious Diseases Detection and Surveillance, USAID, Yaounde, Cameroon – sequence: 10 givenname: Marie Christine surname: Fonkoua fullname: Fonkoua, Marie Christine organization: Infectious Diseases Detection and Surveillance, USAID, Yaounde, Cameroon – sequence: 11 givenname: Michel surname: Toukam fullname: Toukam, Michel organization: Faculty of Medicine and Biomedical Sciences, Yaoundé I University, Yaounde, Cameroon – sequence: 12 givenname: Francois-Xavier surname: Mbopi-Keou fullname: Mbopi-Keou, Francois-Xavier organization: Faculty of Medicine and Biomedical Sciences, Yaoundé I University, Yaounde, Cameroon |
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Snippet | Antimicrobial resistance (AMR) is a major health concern with high rates in low-income countries. Bacteriology laboratories sustain the fight against AMR by... BackgroundAntimicrobial resistance (AMR) is a major health concern with high rates in low-income countries. Bacteriology laboratories sustain the fight against... |
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Title | Antimicrobial susceptibility testing data analysis over 3 years at the Yaoundé General Hospital, Cameroon |
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