ESBL Displace: A Protocol for an Observational Study to Identify Displacing Escherichia coli Strain Candidates from ESBL-Colonized Travel Returners Using Phenotypic, Genomic Sequencing and Metagenome Analysis

Introduction: Invading extended-spectrum beta-lactamase-producing Escherichia coli (ESBL-PE), non-ESBL E. coli, and other bacteria form a complex environment in the gut. The duration and dynamics of ESBL-PE colonization varies among individuals. Understanding the factors associated with colonization...

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Bibliographic Details
Published in:	Microbiology research Vol. 14; no. 1; pp. 177 - 189
Main Authors:	Schweitzer, Michael, Mari, Alfredo, Roloff, Tim, Künzli, Esther, Heller, Stefanie, Albertos Torres, Diana, Meola, Marco, Nogarth, Danica, Laganenka, Leanid, Prampolini, Lisa, Seth-Smith, Helena M. B., Grüninger, Olivia, Gensch, Alexander, Reist, Josiane, Bonhoeffer, Sebastian, Hardt, Wolf-Dietrich, Egli, Adrian
Format:	Journal Article
Language:	English
Published:	Perugia MDPI AG 01-03-2023
Subjects:	Antibiotics Antimicrobial agents Antimicrobial resistance Bacteria Colonization Decolonization Displacement Drug resistance E coli Escherichia coli Ethics extended spectrum beta-lactamase Gene sequencing Genomes Health care Leukocytes (mononuclear) Metagenomics Microbiomes Microbiota Mortality Multidrug resistant organisms Observational studies Patients Peripheral blood mononuclear cells Phylogeny Public health Questionnaires screening sensitive sequencing Strains (organisms) travel Travellers Virulence Whole genome sequencing β Lactamase Switzerland Southeast Asia India
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