The updated mouse universal genotyping array bioinformatic pipeline improves genetic QC in laboratory mice

Abstract The MiniMUGA genotyping array is a popular tool for genetic quality control of laboratory mice and genotyping samples from most experimental crosses involving laboratory strains, particularly for reduced complexity crosses. The content of the production version of the MiniMUGA array is fixe...

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Bibliographic Details
Published in:	G3 : genes - genomes - genetics Vol. 14; no. 10
Main Authors:	Blanchard, Matthew W, Sigmon, John Sebastian, Brennan, Jennifer, Ahulamibe, Chidima, Allen, Michelle E, Ardery, Sam, Baric, Ralph S, Bell, Timothy A, Farrington, Joseph, Ciavatta, Dominic, Cruz Cisneros, Marta C, Drushal, Madison, Ferris, Martin T, Fry, Rebecca C, Gaines, Christiann, Gu, Bin, Heise, Mark T, Hock, Pablo, Hodges, Richard Austin, Hulgin, Mia, Kafri, Tal, Lynch, Rachel M, Magnuson, Terry, Miller, Darla R, Murphy, Caroline E Y, Nguyen, David Truong, Noll, Kelsey E, Proulx, Megan K, Sassetti, Christopher M, Schoenrock, Sarah A, Shaw, Ginger D, Simon, Jeremy M, Smith, Clare M, Styblo, Miroslav, Tarantino, Lisa M, Woo, Joyce, Pardo Manuel de Villena, Fernando
Format:	Journal Article
Language:	English
Published:	US Oxford University Press 07-10-2024
Subjects:	Alleles Animals Computational Biology - methods Genotype Genotyping Techniques - methods Genotyping Techniques - standards Mice Oligonucleotide Array Sequence Analysis - methods Quality Control Reproducibility of Results Software and Data Resources diagnostic SNPs genetic QC substrains chromosomal sex genetic background genetic constructs inbred strains microarrays
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