Artificial Intelligence-Triaged 3-Dimensional Pathology to Improve Detection of Esophageal Neoplasia While Reducing Pathologist Workloads

• Published in: Modern pathology Vol. 36; no. 12; p. 100322
• Main Authors: Erion Barner, Lindsey A, Gao, Gan, Reddi, Deepti M, Lan, Lydia, Burke, Wynn, Mahmood, Faisal, Grady, William M, Liu, Jonathan T C
• Format: Journal Article
• Language: English
• Published: United States 01-12-2023
• Subjects: dysplasia; deep learning; esophageal adenocarcinoma; 3D pathology; light-sheet microscopy; Barrett's esophagus
• ISSN: 0893-3952; 1530-0285; 1530-0285
• DOI: 10.1016/j.modpat.2023.100322

Early detection of esophageal neoplasia via evaluation of endoscopic surveillance biopsies is the key to maximizing survival for patients with Barrett's esophagus, but it is hampered by the sampling limitations of conventional slide-based histopathology. Comprehensive evaluation of whole biopsies with 3-dimensional (3D) pathology may improve early detection of malignancies, but large 3D pathology data sets are tedious for pathologists to analyze. Here, we present a deep learning-based method to automatically identify the most critical 2-dimensional (2D) image sections within 3D pathology data sets for pathologists to review. Our method first generates a 3D heatmap of neoplastic risk for each biopsy, then classifies all 2D image sections within the 3D data set in order of neoplastic risk. In a clinical validation study, we diagnose esophageal biopsies with artificial intelligence-triaged 3D pathology (3 images per biopsy) vs standard slide-based histopathology (16 images per biopsy) and show that our method improves detection sensitivity while reducing pathologist workloads.