Exposure of Bacillus subtilis to mercury induces accumulation of shorter tRNACys species

RNA processing is an essential pathway in the regulation of genetic expression in the cell. In this work, Bacillus subtilis was used to understand the effects of mercury on the mechanism of tRNA metabolism. The CVAAS (cold vapor atomic absorption spectroscopy) method revealed that from the addition...

Full description

Saved in:
Bibliographic Details
Published in:Metallomics Vol. 5; no. 4; pp. 398 - 43
Main Authors: Cruz Hernández, Andrés, Millan, Emmanuel Sánchez, de Jesús Romero Gómez, Sergio, Antonio Cervantes Chávez, José, Garcia Martínez, Rocio, Pastrana Martínez, Xóchitl, Gómez, Jackeline Lizzeta Arvizu, Jones, George H, Guillén, Juan Campos
Format: Journal Article
Language:English
Published: 27-03-2013
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Abstract RNA processing is an essential pathway in the regulation of genetic expression in the cell. In this work, Bacillus subtilis was used to understand the effects of mercury on the mechanism of tRNA metabolism. The CVAAS (cold vapor atomic absorption spectroscopy) method revealed that from the addition of HgCl 2 (0.75 μg ml −1 ) during the bacterial exponential phase, ca. 48% of the added mercury was taken up by the cells. This led to an immediate reduction in the rate of cell division. During this response, we observed accumulation of species shorter than mature tRNA Cys over a 10 h period. We did not observe this accumulation for another five tRNAs analyzed. tRNA processing is largely dependent on RNase R and PNPase in B. subtilis . Thus, when the exonuclease PNPase was absent, we found that the shorter tRNA Cys species increased and mature tRNA Cys decreased after mercury addition, but this proportion changed during the time analyzed. However, in the absence of RNase R and PNPase the accumulation of the shorter tRNA Cys was more pronounced and the mature form was not recovered. In the single rnr mutant strain the shorter tRNA Cys was not observed. All together, we provide in vivo evidence that PNPase and RNase R are indispensable in controlling tRNA Cys quality in the presence of mercury. The effects of mercury on tRNA metabolism are investigated using Northern blotting with wild type, single and double mutants of RNases in Bacillus subtilis and CVAAS.
AbstractList RNA processing is an essential pathway in the regulation of genetic expression in the cell. In this work, Bacillus subtilis was used to understand the effects of mercury on the mechanism of tRNA metabolism. The CVAAS (cold vapor atomic absorption spectroscopy) method revealed that from the addition of HgCl 2 (0.75 μg ml −1 ) during the bacterial exponential phase, ca. 48% of the added mercury was taken up by the cells. This led to an immediate reduction in the rate of cell division. During this response, we observed accumulation of species shorter than mature tRNA Cys over a 10 h period. We did not observe this accumulation for another five tRNAs analyzed. tRNA processing is largely dependent on RNase R and PNPase in B. subtilis . Thus, when the exonuclease PNPase was absent, we found that the shorter tRNA Cys species increased and mature tRNA Cys decreased after mercury addition, but this proportion changed during the time analyzed. However, in the absence of RNase R and PNPase the accumulation of the shorter tRNA Cys was more pronounced and the mature form was not recovered. In the single rnr mutant strain the shorter tRNA Cys was not observed. All together, we provide in vivo evidence that PNPase and RNase R are indispensable in controlling tRNA Cys quality in the presence of mercury. The effects of mercury on tRNA metabolism are investigated using Northern blotting with wild type, single and double mutants of RNases in Bacillus subtilis and CVAAS.
Author Gómez, Jackeline Lizzeta Arvizu
Garcia Martínez, Rocio
Antonio Cervantes Chávez, José
Cruz Hernández, Andrés
Millan, Emmanuel Sánchez
Pastrana Martínez, Xóchitl
de Jesús Romero Gómez, Sergio
Guillén, Juan Campos
Jones, George H
AuthorAffiliation UNAM
Department of Biology
Departamento de Ingeniería Genética de Plantas
Centro de Ciencias de la Atmósfera
Emory University
Unidad Irapuato
Unidad de Microbiología Básica y Aplicada
Campus Aeropuerto
Cinvestav
Universidad Autónoma de Querétaro
AuthorAffiliation_xml – name: Centro de Ciencias de la Atmósfera
– name: Campus Aeropuerto
– name: Emory University
– name: Unidad de Microbiología Básica y Aplicada
– name: Departamento de Ingeniería Genética de Plantas
– name: Universidad Autónoma de Querétaro
– name: UNAM
– name: Unidad Irapuato
– name: Department of Biology
– name: Cinvestav
Author_xml – sequence: 1
  givenname: Andrés
  surname: Cruz Hernández
  fullname: Cruz Hernández, Andrés
– sequence: 2
  givenname: Emmanuel Sánchez
  surname: Millan
  fullname: Millan, Emmanuel Sánchez
– sequence: 3
  givenname: Sergio
  surname: de Jesús Romero Gómez
  fullname: de Jesús Romero Gómez, Sergio
– sequence: 4
  givenname: José
  surname: Antonio Cervantes Chávez
  fullname: Antonio Cervantes Chávez, José
– sequence: 5
  givenname: Rocio
  surname: Garcia Martínez
  fullname: Garcia Martínez, Rocio
– sequence: 6
  givenname: Xóchitl
  surname: Pastrana Martínez
  fullname: Pastrana Martínez, Xóchitl
– sequence: 7
  givenname: Jackeline Lizzeta Arvizu
  surname: Gómez
  fullname: Gómez, Jackeline Lizzeta Arvizu
– sequence: 8
  givenname: George H
  surname: Jones
  fullname: Jones, George H
– sequence: 9
  givenname: Juan Campos
  surname: Guillén
  fullname: Guillén, Juan Campos
BookMark eNp90MtLAzEQBvAgFWyrF-9CvAqreXSzm2Mt9QFFQRR6WyazWRrZF8kG7H9vS6W9eZqB-X1z-CZk1HatJeSas3vOpH5A2QyCCSY3Z2TMs1Qlqebr0XFn_IJMQvhmTM0YS8dkvfzpuxC9pV1FHwFdXcdAQzSDq12gQ0cb6zH6LXVtGdEGCoixiTUMrmv3obDp_GA9HT7e5ovtLttbdDZckvMK6mCv_uaUfD0tPxcvyer9-XUxXyXIFdskGTCFGYDWVkMO2krDgZdlhlzkUM2ERpOZHERmFAgQlWIo03RmjJGqLHM5JXeHv-i7ELytit67Bvy24KzYd1KcOtnh2wP2AY_udC_6stqZm_-M_AWjGm41
CitedBy_id crossref_primary_10_1007_s42770_019_00075_5
crossref_primary_10_1042_BST20150158
crossref_primary_10_3390_biom7010006
crossref_primary_10_12688_f1000research_23780_1
Cites_doi 10.1046/j.1365-2958.2003.03766.x
10.1074/jbc.272.52.33255
10.1021/bi010595q
10.1021/bi801752p
10.1073/pnas.0801971105
10.1093/emboj/21.5.1132
10.1089/ars.2006.8.753
10.1128/AAC.48.6.1993-1999.2004
10.1021/bi052585l
10.1016/S0092-8674(00)80123-3
10.1128/JB.98.3.888-897.1969
10.1073/pnas.220295997
10.1093/emboj/cdg435
10.2174/0929867053764635
10.1099/mic.0.034652-0
10.1111/j.1365-2958.2005.04845.x
10.1016/j.bbrc.2008.05.058
10.1128/JB.187.8.2758-2767.2005
10.1111/j.1742-4658.2008.06743.x
10.1016/S0021-9258(18)54288-5
10.1074/jbc.C700105200
ContentType Journal Article
DBID AAYXX
CITATION
DOI 10.1039/c3mt20203h
DatabaseName CrossRef
DatabaseTitle CrossRef
DatabaseTitleList
DeliveryMethod fulltext_linktorsrc
Discipline Anatomy & Physiology
EISSN 1756-591X
EndPage 43
ExternalDocumentID 10_1039_c3mt20203h
c3mt20203h
GroupedDBID ---
-JG
0-7
0R~
123
29M
4.4
53G
5WD
705
7~J
AAEMU
AAIWI
AAJAE
AANOJ
AAPXW
AARHZ
AAUAY
AAVAP
AAWGC
AAYXX
ABDVN
ABEJV
ABEMK
ABJNI
ABMNT
ABPQP
ABPTD
ABRYZ
ABWST
ABXOH
ABXVV
ACGFS
ACIWK
ACLDK
ACPRK
ADGKP
ADIPN
ADMRA
ADQBN
ADSRN
ADVEK
AEFDR
AENEX
AESAV
AFFZL
AFGWE
AFLYV
AFRAH
AFVBQ
AGQXC
AGSTE
AHGCF
AHGXI
AJEEA
ALMA_UNASSIGNED_HOLDINGS
ANBJS
ANLMG
ANUXI
APEMP
ASKNT
ASPBG
ATGXG
AUDPV
AUNWK
AVWKF
AZFZN
BCRHZ
BEYMZ
BSQNT
C6K
CAG
CITATION
COF
DU5
EBS
EE0
EF-
EJD
F5P
FEDTE
FLUFQ
FOEOM
H13
HVGLF
HZ~
H~N
J3G
J3H
J3I
KBUDW
KOP
KSI
KSN
L-8
N9A
NOMLY
O-G
O9-
OBOKY
OJZSN
OK1
R56
RCNCU
RNS
ROX
ROYLF
RPMJG
RRC
RSCEA
SMJ
UCJ
VUG
ID FETCH-LOGICAL-c160h-7a06c7aa99e9a8a9e3b1a1dd7c128af429cb7b8a27b6a2a2f60c3554bbb36dd83
ISSN 1756-5901
IngestDate Thu Nov 21 21:12:21 EST 2024
Sat Jun 01 02:30:14 EDT 2019
Thu May 19 04:23:57 EDT 2016
IsDoiOpenAccess false
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 4
Language English
LinkModel OpenURL
MergedId FETCHMERGED-LOGICAL-c160h-7a06c7aa99e9a8a9e3b1a1dd7c128af429cb7b8a27b6a2a2f60c3554bbb36dd83
OpenAccessLink https://academic.oup.com/metallomics/article-pdf/5/4/398/34751865/c3mt20203h.pdf
PageCount 6
ParticipantIDs crossref_primary_10_1039_c3mt20203h
rsc_primary_c3mt20203h
PublicationCentury 2000
PublicationDate 20130327
PublicationDateYYYYMMDD 2013-03-27
PublicationDate_xml – month: 3
  year: 2013
  text: 20130327
  day: 27
PublicationDecade 2010
PublicationTitle Metallomics
PublicationYear 2013
References Oussenko (c3mt20203h-(cit2)/*[position()=1]) 2005; 187
Schurer (c3mt20203h-(cit6)/*[position()=1]) 2001; 382
Wu (c3mt20203h-(cit23)/*[position()=1]) 2009; 48
Mohanty (c3mt20203h-(cit3)/*[position()=1]) 2000; 97
Hochgräfe (c3mt20203h-(cit19)/*[position()=1]) 2007; 282
Wu (c3mt20203h-(cit22)/*[position()=1]) 2008; 372
Hochgräfe (c3mt20203h-(cit12)/*[position()=1]) 2005; 58
Dixit (c3mt20203h-(cit15)/*[position()=1]) 2004; 48
Varshney (c3mt20203h-(cit16)/*[position()=1]) 1991; 266
Allocati (c3mt20203h-(cit11)/*[position()=1]) 2009; 276
Carrao (c3mt20203h-(cit7)/*[position()=1]) 2003; 50
Hayakawa (c3mt20203h-(cit20)/*[position()=1]) 2001; 40
Hayakawa (c3mt20203h-(cit21)/*[position()=1]) 2006; 45
Reuven (c3mt20203h-(cit17)/*[position()=1]) 1997; 272
Anderson (c3mt20203h-(cit1)/*[position()=1]) 2009
Li (c3mt20203h-(cit4)/*[position()=1]) 1996; 86
Pellegrini (c3mt20203h-(cit5)/*[position()=1]) 2003; 22
Valko (c3mt20203h-(cit10)/*[position()=1]) 2005; 12
Beppu (c3mt20203h-(cit14)/*[position()=1]) 1969; 98
Li (c3mt20203h-(cit8)/*[position()=1]) 2002; 21
Masip (c3mt20203h-(cit13)/*[position()=1]) 2006; 8
Campos (c3mt20203h-(cit9)/*[position()=1]) 2010; 156
Neuenfeldt (c3mt20203h-(cit18)/*[position()=1]) 2008; 105
References_xml – volume: 50
  start-page: 1349
  year: 2003
  ident: c3mt20203h-(cit7)/*[position()=1]
  publication-title: Mol. Microbiol.
  doi: 10.1046/j.1365-2958.2003.03766.x
  contributor:
    fullname: Carrao
– volume: 272
  start-page: 33255
  year: 1997
  ident: c3mt20203h-(cit17)/*[position()=1]
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.272.52.33255
  contributor:
    fullname: Reuven
– volume: 40
  start-page: 9977
  year: 2001
  ident: c3mt20203h-(cit20)/*[position()=1]
  publication-title: Biochemistry
  doi: 10.1021/bi010595q
  contributor:
    fullname: Hayakawa
– volume: 48
  start-page: 2012
  year: 2009
  ident: c3mt20203h-(cit23)/*[position()=1]
  publication-title: Biochemistry
  doi: 10.1021/bi801752p
  contributor:
    fullname: Wu
– volume: 382
  start-page: 1147
  year: 2001
  ident: c3mt20203h-(cit6)/*[position()=1]
  publication-title: Biol. Chem.
  contributor:
    fullname: Schurer
– volume: 105
  start-page: 7953
  year: 2008
  ident: c3mt20203h-(cit18)/*[position()=1]
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.0801971105
  contributor:
    fullname: Neuenfeldt
– volume: 21
  start-page: 1132
  year: 2002
  ident: c3mt20203h-(cit8)/*[position()=1]
  publication-title: EMBO J.
  doi: 10.1093/emboj/21.5.1132
  contributor:
    fullname: Li
– volume: 8
  start-page: 753
  year: 2006
  ident: c3mt20203h-(cit13)/*[position()=1]
  publication-title: Antioxid. Redox Signaling
  doi: 10.1089/ars.2006.8.753
  contributor:
    fullname: Masip
– volume: 48
  start-page: 1993
  year: 2004
  ident: c3mt20203h-(cit15)/*[position()=1]
  publication-title: Antimicrob. Agents Chemother.
  doi: 10.1128/AAC.48.6.1993-1999.2004
  contributor:
    fullname: Dixit
– volume: 45
  start-page: 6749
  year: 2006
  ident: c3mt20203h-(cit21)/*[position()=1]
  publication-title: Biochemistry
  doi: 10.1021/bi052585l
  contributor:
    fullname: Hayakawa
– volume: 86
  start-page: 503
  year: 1996
  ident: c3mt20203h-(cit4)/*[position()=1]
  publication-title: Cell
  doi: 10.1016/S0092-8674(00)80123-3
  contributor:
    fullname: Li
– volume: 98
  start-page: 888
  year: 1969
  ident: c3mt20203h-(cit14)/*[position()=1]
  publication-title: J. Bacteriol.
  doi: 10.1128/JB.98.3.888-897.1969
  contributor:
    fullname: Beppu
– volume: 97
  start-page: 11966
  year: 2000
  ident: c3mt20203h-(cit3)/*[position()=1]
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.220295997
  contributor:
    fullname: Mohanty
– volume: 22
  start-page: 4534
  year: 2003
  ident: c3mt20203h-(cit5)/*[position()=1]
  publication-title: EMBO J.
  doi: 10.1093/emboj/cdg435
  contributor:
    fullname: Pellegrini
– volume: 12
  start-page: 1161
  year: 2005
  ident: c3mt20203h-(cit10)/*[position()=1]
  publication-title: Curr. Med. Chem.
  doi: 10.2174/0929867053764635
  contributor:
    fullname: Valko
– start-page: 525491
  year: 2009
  ident: c3mt20203h-(cit1)/*[position()=1]
  publication-title: Int. J. Microbiol.
  contributor:
    fullname: Anderson
– volume: 156
  start-page: 2102
  year: 2010
  ident: c3mt20203h-(cit9)/*[position()=1]
  publication-title: Microbiology
  doi: 10.1099/mic.0.034652-0
  contributor:
    fullname: Campos
– volume: 58
  start-page: 409
  year: 2005
  ident: c3mt20203h-(cit12)/*[position()=1]
  publication-title: Mol. Microbiol.
  doi: 10.1111/j.1365-2958.2005.04845.x
  contributor:
    fullname: Hochgräfe
– volume: 372
  start-page: 288
  year: 2008
  ident: c3mt20203h-(cit22)/*[position()=1]
  publication-title: Biochem. Biophys. Res. Commun.
  doi: 10.1016/j.bbrc.2008.05.058
  contributor:
    fullname: Wu
– volume: 187
  start-page: 2758
  year: 2005
  ident: c3mt20203h-(cit2)/*[position()=1]
  publication-title: J. Bacteriol.
  doi: 10.1128/JB.187.8.2758-2767.2005
  contributor:
    fullname: Oussenko
– volume: 276
  start-page: 58
  year: 2009
  ident: c3mt20203h-(cit11)/*[position()=1]
  publication-title: FEBS J.
  doi: 10.1111/j.1742-4658.2008.06743.x
  contributor:
    fullname: Allocati
– volume: 266
  start-page: 24712
  year: 1991
  ident: c3mt20203h-(cit16)/*[position()=1]
  publication-title: J. Biol. Chem.
  doi: 10.1016/S0021-9258(18)54288-5
  contributor:
    fullname: Varshney
– volume: 282
  start-page: 25981
  year: 2007
  ident: c3mt20203h-(cit19)/*[position()=1]
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.C700105200
  contributor:
    fullname: Hochgräfe
SSID ssj0064005
Score 1.9934685
Snippet RNA processing is an essential pathway in the regulation of genetic expression in the cell. In this work, Bacillus subtilis was used to understand the effects...
SourceID crossref
rsc
SourceType Aggregation Database
Enrichment Source
Publisher
StartPage 398
Title Exposure of Bacillus subtilis to mercury induces accumulation of shorter tRNACys species
Volume 5
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://sdu.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1Lb9QwELZ22wsXBJSKloIsgbhEEUmc5zEbAlUPPbSl2tvKcbzsSptklQei_fUdx3YSKIdy4BLt2h4r8Xwaj2fGMwh9pAGz1kSkx4tcOKDYDjMBJZ5pkSjkhPihw4RN9_w6uFyGX1I3nc10WdKx7b9yGtqA1-Lm7D9we5gUGuA38ByewHV4Ponv6a99Jax-QgtcULbd7brGaLqs3e62fTaHgtcMFtKAw3gnwrEoY12hingJomYj4m9ro726jJM7oBUV6lWkoS79xFvhry8mkfJJ3d3DHlaXvefd1pZpES8pffHDSHH7UFpd06KgZcd3xrUiAgDd62E5Ny5AhEHHIm6MqwpeuzK-9f9JIScHOfdDhpFJQwaosdvKSISZuRTm5GQj5_0ph19UjXyVqaVDVJ0gpkwcoIRz4PmmuCsr965pW192Z5Do3gS47kQ6E1nw-tGuAcAEtjJStI5wzG7GvVHHA_yxZQ6BjL0Ln0SrkXaODh2QeSByD-PF8vZWqwU-CEuvv52rPkLnyiXR55H6N-1oXusiNL2yc_MCPVenFBxLeL1EM16-QkdxSduquMOfcB833DtkjtBSIw5Xa6wRhzXicFthhTisEIeniBNECnFYIQ4rxL1G37-mN8m5qep1mMz2rY0ZUMtnAaVRxCMa0oiTzKZ2ngcMlCC6Bs2HZUEWUifIfOpQZ-1bTKi7WZYRP89DcowOyqrkbxCOfDuPApYz7oHKyy0KK0YJ4dx1fZFj8QR90Ou02su0LKvHvDhBx7CEw4Bpx-nfO1b7fH36pLnfomcjRs_QQVt3_B2aN3n3XnH-AYi_kS0
link.rule.ids 315,782,786,27933,27934
linkProvider Oxford University Press
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Exposure+of+Bacillus+subtilis+to+mercury+induces+accumulation+of+shorter+tRNACys+species&rft.jtitle=Metallomics&rft.au=Cruz+Hern%C3%A1ndez%2C+Andr%C3%A9s&rft.au=Millan%2C+Emmanuel+S%C3%A1nchez&rft.au=de+Jes%C3%BAs+Romero+G%C3%B3mez%2C+Sergio&rft.au=Antonio+Cervantes+Ch%C3%A1vez%2C+Jos%C3%A9&rft.date=2013-03-27&rft.issn=1756-5901&rft.eissn=1756-591X&rft.volume=5&rft.issue=4&rft.spage=398&rft_id=info:doi/10.1039%2Fc3mt20203h&rft.externalDBID=n%2Fa&rft.externalDocID=10_1039_c3mt20203h
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1756-5901&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1756-5901&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1756-5901&client=summon