Single TNFα trimers mediating NF-κ B activation: stochastic robustness of NF-κ B signaling

• Published in: BMC bioinformatics Vol. 8; no. 1; p. 376
• Main Authors: Lipniacki, Tomasz, Puszynski, Krzysztof, Paszek, Pawel, Brasier, Allan R, Kimmel, Marek
• Format: Journal Article
• Language: English
• Published: BioMed Central Ltd 09-10-2007; BioMed Central; BMC
• Subjects: DNA binding proteins; Health aspects; Immune response; Tumor necrosis factor; Poland
• ISSN: 1471-2105; 1471-2105
• DOI: 10.1186/1471-2105-8-376

Background The NF- Kappa B regulatory network controls innate immune response by transducing variety of pathogen-derived and cytokine stimuli into well defined single-cell gene regulatory events. Results We analyze the network by means of the model combining a deterministic description for molecular species with large cellular concentrations with two classes of stochastic switches: cell-surface receptor activation by TNF alpha ligand, and I Kappa B alpha and A20 genes activation by NF- Kappa B molecules. Both stochastic switches are associated with amplification pathways capable of translating single molecular events into tens of thousands of synthesized or degraded proteins. Here, we show that at a low TNF alpha dose only a fraction of cells are activated, but in these activated cells the amplification mechanisms assure that the amplitude of NF- Kappa B nuclear translocation remains above a threshold. Similarly, the lower nuclear NF- Kappa B concentration only reduces the probability of gene activation, but does not reduce gene expression of those responding. Conclusion These two effects provide a particular stochastic robustness in cell regulation, allowing cells to respond differently to the same stimuli, but causing their individual responses to be unequivocal. Both effects are likely to be crucial in the early immune response: Diversity in cell responses causes that the tissue defense is harder to overcome by relatively simple programs coded in viruses and other pathogens. The more focused single-cell responses help cells to choose their individual fates such as apoptosis or proliferation. The model supports the hypothesis that binding of single TNF alpha ligands is sufficient to induce massive NF- Kappa B translocation and activation of NF- Kappa B dependent genes.