Variable selection methods in QSAR: an overview

• Published in: Current topics in medicinal chemistry Vol. 8; no. 18; p. 1606
• Main Authors: González, Maykel Pérez, Terán, Carmen, Saíz-Urra, Liane, Teijeira, Marta
• Format: Journal Article
• Language: English
• Published: United Arab Emirates 01-12-2008
• Subjects: Computer Simulation; Drug Design; Quantitative Structure-Activity Relationship
• ISSN: 1873-4294
• DOI: 10.2174/156802608786786552

Variable selection is a procedure used to select the most important features to obtain as much information as possible from a reduced amount of features. The selection stage is crucial. The subsequent design of a quantitative structure-activity relationship (QSAR) model (regression or discriminant) would lead to poor performance if little significant features are selected. In drug design modern era, by the means of combinatorial chemistry and high throughput screening, an unprecedented amount of experimental information has been generated. In addition, many molecular descriptors have been defined in the last two decays. All this information can be analyzed by QSAR techniques using adequate statistical procedures. These techniques and procedures should be fast, automated, and applicable to large data sets of structurally diverse compounds. For that reason, the identification of the best one seems to be a very difficult task in view of the large variable selection techniques existing nowadays. The intention of this review is to summarize some of the present knowledge concerning to variable selection methods applied to some well-known statistical techniques such as linear regression, PLS, kNN, Artificial Neural Networks, etc, with the aim to disseminate the advances of this important stage of the QSAR building model.