Tandem Mass Tags:  A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

A novel MS/MS-based analysis strategy using isotopomer labels, referred to as “tandem mass tags” (TMTs), for the accurate quantification of peptides and proteins is described. The new tags are designed to ensure that identical peptides labeled with different TMTs exactly comigrate in all separations...

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Published in:Analytical chemistry (Washington) Vol. 75; no. 8; pp. 1895 - 1904
Main Authors: Thompson, Andrew, Schäfer, Jürgen, Kuhn, Karsten, Kienle, Stefan, Schwarz, Josef, Schmidt, Günter, Neumann, Thomas, Hamon, Christian
Format: Journal Article
Language:English
Published: Washington, DC American Chemical Society 15-04-2003
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Abstract A novel MS/MS-based analysis strategy using isotopomer labels, referred to as “tandem mass tags” (TMTs), for the accurate quantification of peptides and proteins is described. The new tags are designed to ensure that identical peptides labeled with different TMTs exactly comigrate in all separations. The tags require novel methods of quantification analysis using tandem mass spectrometry. The new tags and analysis methods allow peptides from different samples to be identified by their relative abundance with greater ease and accuracy than other methods. The new TMTs permit simultaneous determination of both the identity and relative abundances of peptide pairs using a collision induced dissociation (CID)-based analysis method. Relative abundance measurements made in the MS/MS mode using the new tags are accurate and sensitive. Compared to MS-mode measurements, a very high signal-to-noise ratio is achieved with MS/MS based detection. The new tags should be applicable to a wide variety of peptide isolation methods.
AbstractList A novel MS/MS-based analysis strategy using isotopomer labels, referred to as "tandem mass tags" (TMTs), for the accurate quantification of peptides and proteins is described. The new tags are designed to ensure that identical peptides labeled with different TMTs exactly comigrate in all separations. The tags require novel methods of quantification analysis using tandem mass spectrometry. The new tags and analysis methods allow peptides from different samples to be identified by their relative abundance with greater ease and accuracy than other methods. The new TMTs permit simultaneous determination of both the identity and relative abundances of peptide pairs using a collision induced dissociation (CID)-based analysis method. Relative abundance measurements made in the MS/MS mode using the new tags are accurate and sensitive. Compared to MS-mode measurements, a very high signal-to-noise ratio is achieved with MS/MS based detection. The new tags should be applicable to a wide variety of peptide isolation methods.
A novel MS/MS-based analysis strategy using isotopomer labels, referred to as "tandem mass tags" (TMTs), for the accurate quantification of peptides and proteins is described. The new tags are designed to ensure that identical peptides labeled with different TMTs exactly comigrate in all separations. The tags require novel methods of quantification analysis using tandem mass spectrometry. The new tags and analysis methods allow peptides from different samples to be identified by their relative abundance with greater ease and accuracy than other methods. The new TMTs permit simultaneous determination of both the identity and relative abundances of peptide pairs using a collision induced dissociation (CID)-based analysis method. Relative abundance measurements made in the MS/MS mode using the new tags are accurate and sensitive. Compared to MS-mode measurements, a very high signal-to-noise ratio is achieved with MS/MS based detection. The new tags should be applicable to a wide variety of peptide isolation methods. [PUBLICATION ABSTRACT]
Author Neumann, Thomas
Schäfer, Jürgen
Hamon, Christian
Kuhn, Karsten
Schmidt, Günter
Thompson, Andrew
Kienle, Stefan
Schwarz, Josef
Author_xml – sequence: 1
  givenname: Andrew
  surname: Thompson
  fullname: Thompson, Andrew
– sequence: 2
  givenname: Jürgen
  surname: Schäfer
  fullname: Schäfer, Jürgen
– sequence: 3
  givenname: Karsten
  surname: Kuhn
  fullname: Kuhn, Karsten
– sequence: 4
  givenname: Stefan
  surname: Kienle
  fullname: Kienle, Stefan
– sequence: 5
  givenname: Josef
  surname: Schwarz
  fullname: Schwarz, Josef
– sequence: 6
  givenname: Günter
  surname: Schmidt
  fullname: Schmidt, Günter
– sequence: 7
  givenname: Thomas
  surname: Neumann
  fullname: Neumann, Thomas
– sequence: 8
  givenname: Christian
  surname: Hamon
  fullname: Hamon, Christian
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Goodlett D. R. (ac0262560b00018/ac0262560b00018_1) 2001; 15
Chersi A. (ac0262560b00030/ac0262560b00030_1) 2000; 1474
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Snippet A novel MS/MS-based analysis strategy using isotopomer labels, referred to as “tandem mass tags” (TMTs), for the accurate quantification of peptides and...
A novel MS/MS-based analysis strategy using isotopomer labels, referred to as "tandem mass tags" (TMTs), for the accurate quantification of peptides and...
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SubjectTerms Analytical chemistry
Chemistry
Comparative analysis
Exact sciences and technology
Isotopes
Mass Spectrometry - methods
Miscellaneous
Molecular Probes
Peptides - analysis
Peptides - isolation & purification
Proteins
Proteins - analysis
Spectrum analysis
Title Tandem Mass Tags:  A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS
URI http://dx.doi.org/10.1021/ac0262560
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