Martini Coarse-Grained Force Field: Extension to DNA

We systematically parameterized a coarse-grained (CG) model for DNA that is compatible with the Martini force field. The model maps each nucleotide into six to seven CG beads and is parameterized following the Martini philosophy. The CG nonbonded interactions are based on partitioning of the nucleob...

Full description

Bibliographic Details

Published in:	Journal of chemical theory and computation Vol. 11; no. 8; pp. 3932 - 3945
Main Authors:	Uusitalo, Jaakko J, Ingólfsson, Helgi I, Akhshi, Parisa, Tieleman, D. Peter, Marrink, Siewert J
Format:	Journal Article
Language:	English
Published:	United States American Chemical Society 11-08-2015
Subjects:	Beads Bonding Compatibility Computer simulation Deoxyribonucleic acid DNA - chemistry DNA, Single-Stranded - chemistry Hydrogen Bonding Molecular Dynamics Simulation Nucleic Acid Conformation Nucleotides Protein Binding Proteins - chemistry Proteins - metabolism Solvents
Online Access:	Get full text
Tags:	Add Tag No Tags, Be the first to tag this record!