Promiscuous Enzymes Cooperate at the Substrate Level En Route to Lactazole A

• Published in: Journal of the American Chemical Society Vol. 142; no. 32; pp. 13886 - 13897
• Main Authors: Vinogradov, Alexander A, Shimomura, Morito, Kano, Naokazu, Goto, Yuki, Onaka, Hiroyasu, Suga, Hiroaki
• Format: Journal Article
• Language: English
• Published: United States American Chemical Society 12-08-2020
• Subjects: Hydro-Lyases - metabolism; Molecular Structure; Nitric Oxide Synthase - metabolism; Streptomyces - chemistry
• ISSN: 0002-7863; 1520-5126
• DOI: 10.1021/jacs.0c05541

Enzymes involved in the biosynthesis of ribosomally synthesized and post-translationally modified peptides (RiPPs) often have relaxed specificity profiles and are able to modify diverse substrates. When several such enzymes act together during precursor peptide maturation, a multitude of products can form, yet usually the biosynthesis converges on a single natural product. For the most part, the mechanisms controlling the integrity of RiPP assembly remain elusive. Here, we investigate the biosynthesis of lactazole A, a model thiopeptide produced by five promiscuous enzymes from a ribosomal precursor peptide. Using our in vitro thiopeptide production (FIT-Laz) system, we determine the order of biosynthetic events at the individual modification level and supplement this study with substrate scope analysis for participating enzymes. Our results reveal an unusual but well-defined assembly process where cyclodehydration, dehydroalanine formation, and azoline dehydrogenation events are intertwined due to minimal substrate recognition requirements characteristic of every lactazole enzyme. Additionally, each enzyme plays a role in directing LazBF-mediated dehydroalanine formation, which emerges as the central theme of the assembly process. Cyclodehydratase LazDE discriminates a single serine residue for azoline formation, leaving the remaining five as potential dehydratase substrates. Pyridine synthase LazC exerts kinetic control over LazBF to prevent the formation of overdehydrated thiopeptides, whereas the coupling of dehydrogenation to dehydroalanine installation impedes generation of underdehydrated products. Altogether, our results indicate that substrate-level cooperation between the biosynthetic enzymes maintains the integrity of lactazole assembly. This work advances our understanding of RiPP biosynthesis processes and facilitates thiopeptide bioengineering.