Photoreversible DNA Condensation Using Light-Responsive Surfactants

• Published in: Journal of the American Chemical Society Vol. 128; no. 19; pp. 6400 - 6408
• Main Authors: Le Ny, Anne-Laure M, Lee, C. Ted
• Format: Journal Article
• Language: English
• Published: United States American Chemical Society 17-05-2006
• Subjects: Chemical Precipitation; DNA - metabolism; Hydrophobic and Hydrophilic Interactions; Light; Nucleic Acid Conformation; Photochemistry; Stereoisomerism; Surface-Active Agents - metabolism; Surface-Active Agents - radiation effects
• ISSN: 0002-7863; 1520-5126
• DOI: 10.1021/ja0576738

A means to control DNA compaction with light illumination has been developed using the interaction of DNA with a photoresponsive cationic surfactant. The surfactant undergoes a reversible photoisomerization upon exposure to visible (trans isomer, more hydrophobic) or UV (cis isomer, more hydrophilic) light. As a result, surfactant binding to DNA and the resulting DNA condensation can be tuned with light. Dynamic light scattering (DLS) measurements were used to follow λ-DNA compaction from the elongated-coil to the compact globular form as a function of surfactant addition and light illumination. The results reveal that compaction occurs at a surfactant-to-DNA base pair ratio of approximately 7 under visible light, while no compaction is observed up to a ratio of 31 under UV light. Upon compaction, the measured diffusion coefficient increases from a value of 0.6 × 10-8 cm2/s (elongated coil with an end-to-end distance of 1.27 μm) to a value of 1.7 × 10-8 cm2/s (compact globule with a hydrodynamic radius of 120 nm). Moreover, the light-scattering results demonstrate that the compaction process is completely photoreversible. Fluorescence microscopy with T4-DNA was used to further confirm the light-scattering results, allowing single-molecule detection of the light-controlled coil-to-globule transition. These structural studies were combined with absorbance and fluorescence spectroscopy of crystal violet in order to elucidate the binding mechanism of the photosurfactant to DNA. The results indicate that both electrostatic and hydrophobic forces are important in the compaction process. Finally, a DNA−photosurfactant−water phase diagram was constructed to examine the effects of both DNA and surfactant concentration on DNA compaction. The results reveal that precipitation, which occurs during the latter stages of condensation, can also be reversibly controlled with light illumination. The combined results clearly show the ability to control the interaction between DNA and the complexing agent and, therefore, DNA condensation with light.