Search Results - "von Haeseler, Arndt"

SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis by Muhar, Matthias, Ebert, Anja, Neumann, Tobias, Umkehrer, Christian, Jude, Julian, Wieshofer, Corinna, Rescheneder, Philipp, Lipp, Jesse J, Herzog, Veronika A, Reichholf, Brian, Cisneros, David A, Hoffmann, Thomas, Schlapansky, Moritz F, Bhat, Pooja, von Haeseler, Arndt, Köcher, Thomas, Obenauf, Anna C, Popow, Johannes, Ameres, Stefan L, Zuber, Johannes

“…Defining direct targets of transcription factors and regulatory pathways is key to understanding their roles in physiology and disease. We combined SLAM-seq…”
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Sequencing of the Arabidopsis NOR2 reveals its distinct organization and tissue-specific rRNA ribosomal variants by Sims, Jason, Sestini, Giovanni, Elgert, Christiane, von Haeseler, Arndt, Schlögelhofer, Peter

“…Despite vast differences between organisms, some characteristics of their genomes are conserved, such as the nucleolus organizing region (NOR). The NOR is…”
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TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics by Jobb, Gangolf, von Haeseler, Arndt, Strimmer, Korbinian

“…Most analysis programs for inferring molecular phylogenies are difficult to use, in particular for researchers with little programming experience. TREEFINDER…”
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A compendium of genome-wide sequence reads from NBS (nucleotide binding site) domains of resistance genes in the common potato by Prakash, Celine, Trognitz, Friederike Ch, Venhuizen, Peter, von Haeseler, Arndt, Trognitz, Bodo

“…SolariX is a compendium of DNA sequence tags from the nucleotide binding site (NBS) domain of disease resistance genes of the common potato, Solanum tuberosum…”
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The genomic basis of circadian and circalunar timing adaptations in a midge by Kaiser, Tobias S., Poehn, Birgit, Szkiba, David, Preussner, Marco, Sedlazeck, Fritz J., Zrim, Alexander, Neumann, Tobias, Nguyen, Lam-Tung, Betancourt, Andrea J., Hummel, Thomas, Vogel, Heiko, Dorner, Silke, Heyd, Florian, von Haeseler, Arndt, Tessmar-Raible, Kristin

“…Organisms use endogenous clocks to anticipate regular environmental cycles, such as days and tides. Natural variants resulting in differently timed behaviour…”
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Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects by Dell'Ampio, Emiliano, Meusemann, Karen, Szucsich, Nikolaus U, Peters, Ralph S, Meyer, Benjamin, Borner, Janus, Petersen, Malte, Aberer, Andre J, Stamatakis, Alexandros, Walzl, Manfred G, Minh, Bui Quang, von Haeseler, Arndt, Ebersberger, Ingo, Pass, Günther, Misof, Bernhard

“…Phylogenetic relationships of the primarily wingless insects are still considered unresolved. Even the most comprehensive phylogenomic studies that addressed…”
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Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase by Schenk, Sven, Bannister, Stephanie C, Sedlazeck, Fritz J, Anrather, Dorothea, Minh, Bui Quang, Bileck, Andrea, Hartl, Markus, von Haeseler, Arndt, Gerner, Christopher, Raible, Florian, Tessmar-Raible, Kristin

“…Many marine animals, ranging from corals to fishes, synchronise reproduction to lunar cycles. In the annelid this timing is orchestrated by an endogenous…”
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W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis by Trifinopoulos, Jana, Nguyen, Lam-Tung, von Haeseler, Arndt, Minh, Bui Quang

“…This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood…”
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Distribution and Phylogeny of Light-Oxygen-Voltage-Blue-Light-Signaling Proteins in the Three Kingdoms of Life by KRAUSS, Ulrich, QUANG MINH, Bui, LOSI, Aba, GÄRTNER, Wolfgang, EGGERT, Thorsten, VON HAESELER, Arndt, JAEGER, Karl-Erich

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices by Chernomor, Olga, Von Haeseler, Arndt, Minh, Bui Quang

“…In phylogenomics the analysis of concatenated gene alignments, the so-called supermatrix, is commonly accompanied by the assumption of partition models. Under…”
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Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance by Jagut, Marlène, Hamminger, Patricia, Woglar, Alexander, Millonigg, Sophia, Paulin, Luis, Mikl, Martin, Dello Stritto, Maria Rosaria, Tang, Lois, Habacher, Cornelia, Tam, Angela, Gallach, Miguel, von Haeseler, Arndt, Villeneuve, Anne M, Jantsch, Verena

“…During the first meiotic division, crossovers (COs) between homologous chromosomes ensure their correct segregation. COs are produced by homologous…”
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Likelihood-Mapping: A Simple Method to Visualize Phylogenetic Content of a Sequence Alignment by Strimmer, Korbinian, Von Haeseler, Arndt

“…We introduce a graphical method, likelihood-mapping, to visualize the phylogenetic content of a set of aligned sequences. The method is based on an analysis of…”
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UFBoot2: Improving the Ultrafast Bootstrap Approximation by Hoang, Diep Thi, Chernomor, Olga, von Haeseler, Arndt, Minh, Bui Quang, Vinh, Le Sy

“…The standard bootstrap (SBS), despite being computationally intensive, is widely used in maximum likelihood phylogenetic analyses. We recently proposed the…”
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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era by Minh, Bui Quang, Schmidt, Heiko A, Chernomor, Olga, Schrempf, Dominik, Woodhams, Michael D, von Haeseler, Arndt, Lanfear, Robert

“…Abstract IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using…”
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IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies by Nguyen, Lam-Tung, Schmidt, Heiko A, von Haeseler, Arndt, Minh, Bui Quang

“…Large phylogenomics data sets require fast tree inference methods, especially for maximum-likelihood (ML) phylogenies. Fast programs exist, but due to inherent…”
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NextGenMap: fast and accurate read mapping in highly polymorphic genomes by Sedlazeck, Fritz J, Rescheneder, Philipp, von Haeseler, Arndt

“…When choosing a read mapper, one faces the trade off between speed and the ability to map reads in highly polymorphic regions. Here, we report NextGenMap, a…”
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VARIFI-Web-Based Automatic Variant Identification, Filtering and Annotation of Amplicon Sequencing Data by Krunic, Milica, Venhuizen, Peter, Müllauer, Leonhard, Kaserer, Bettina, von Haeseler, Arndt

“…Fast and affordable benchtop sequencers are becoming more important in improving personalized medical treatment. Still, distinguishing genetic variants between…”
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Accurate detection of complex structural variations using single-molecule sequencing by Sedlazeck, Fritz J., Rescheneder, Philipp, Smolka, Moritz, Fang, Han, Nattestad, Maria, von Haeseler, Arndt, Schatz, Michael C.

“…Structural variations are the greatest source of genetic variation, but they remain poorly understood because of technological limitations. Single-molecule…”
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Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes by Alves, Ricardo J. Eloy, Minh, Bui Quang, Urich, Tim, von Haeseler, Arndt, Schleper, Christa

“…Ammonia-oxidising archaea (AOA) are ubiquitous and abundant in nature and play a major role in nitrogen cycling. AOA have been studied intensively based on the…”
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ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain by Vesely, Cornelia, Tauber, Stefanie, Sedlazeck, Fritz J., Tajaddod, Mansoureh, Haeseler, Arndt von, Jantsch, Michael F.

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