Search Results - "van Heck, Ruben G. A"

More than just a gut feeling: constraint-based genome-scale metabolic models for predicting functions of human intestinal microbes by van der Ark, Kees C H, van Heck, Ruben G A, Martins Dos Santos, Vitor A P, Belzer, Clara, de Vos, Willem M

“…The human gut is colonized with a myriad of microbes, with substantial interpersonal variation. This complex ecosystem is an integral part of the…”
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The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis by Belda, Eugeni, van Heck, Ruben G. A., José Lopez-Sanchez, Maria, Cruveiller, Stéphane, Barbe, Valérie, Fraser, Claire, Klenk, Hans-Peter, Petersen, Jörn, Morgat, Anne, Nikel, Pablo I., Vallenet, David, Rouy, Zoé, Sekowska, Agnieszka, Martins dos Santos, Vitor A. P., de Lorenzo, Víctor, Danchin, Antoine, Médigue, Claudine

“…Summary By the time the complete genome sequence of the soil bacterium Pseudomonas putida KT2440 was published in 2002 (Nelson et al., ) this bacterium was…”
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Green genes: bioinformatics and systems-biology innovations drive algal biotechnology by Reijnders, Maarten J.M.F, van Heck, Ruben G.A, Lam, Carolyn M.C, Scaife, Mark A, Santos, Vitor A.P. Martins dos, Smith, Alison G, Schaap, Peter J

“…Highlights • Microalgae are potential hosts for industrial biosynthesis of valuable compounds. • Genome sequences of many microalgae are available, but…”
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Efficient Reconstruction of Predictive Consensus Metabolic Network Models by van Heck, Ruben G A, Ganter, Mathias, Martins Dos Santos, Vitor A P, Stelling, Joerg

“…Understanding cellular function requires accurate, comprehensive representations of metabolism. Genome-scale, constraint-based metabolic models (GSMs) provide…”
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In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions by Kampers, Linde F C, van Heck, Ruben G A, Donati, Stefano, Saccenti, Edoardo, Volkers, Rita J M, Schaap, Peter J, Suarez-Diez, Maria, Nikel, Pablo I, Martins Dos Santos, Vitor A P

“…Pseudomonas putida is a metabolically versatile, genetically accessible, and stress-robust species with outstanding potential to be used as a workhorse for…”
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Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling by Pham, Nhung, van Heck, Ruben G A, van Dam, Jesse C J, Schaap, Peter J, Saccenti, Edoardo, Suarez-Diez, Maria

“…Genome-scale metabolic models (GEMs) are manually curated repositories describing the metabolic capabilities of an organism. GEMs have been successfully used…”
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A multi-platform flow device for microbial (co-) cultivation and microscopic analysis by Hesselman, Matthijn C, Odoni, Dorett I, Ryback, Brendan M, de Groot, Suzette, van Heck, Ruben G A, Keijsers, Jaap, Kolkman, Pim, Nieuwenhuijse, David, van Nuland, Youri M, Sebus, Erik, Spee, Rob, de Vries, Hugo, Wapenaar, Marten T, Ingham, Colin J, Schroën, Karin, Martins dos Santos, Vítor A P, Spaans, Sebastiaan K, Hugenholtz, Floor, van Passel, Mark W J

“…Novel microbial cultivation platforms are of increasing interest to researchers in academia and industry. The development of materials with specialized…”
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Toolkit for Visualization of the Cellular Structure and Organelles in Aspergillus niger by ten Buren, Emiel B. J, Karrenbelt, Michiel A. P, Lingemann, Marit, Chordia, Shreyans, Deng, Ying, Hu, JingJing, Verest, Johanna M, Wu, Vincen, Gonzalez, Teresita J. Bello, van Heck, Ruben G. A, Odoni, Dorett I, Schonewille, Tom, van der Straat, Laura, de Graaff, Leo H, van Passel, Mark W. J

“…Aspergillus niger is a filamentous fungus that is extensively used in industrial fermentations for protein expression and the production of organic acids…”
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Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data by Koehorst, Jasper J., van Dam, Jesse C. J., van Heck, Ruben G. A., Saccenti, Edoardo, dos Santos, Vitor A. P. Martins, Suarez-Diez, Maria, Schaap, Peter J.

“…Pseudomonas is a highly versatile genus containing species that can be harmful to humans and plants while others are widely used for bioengineering and…”
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Comparative proteomics of Rhizopus delemar ATCC 20344 unravels the role of amino acid catabolism in fumarate accumulation by Odoni, Dorett I, Tamayo-Ramos, Juan A, Sloothaak, Jasper, van Heck, Ruben G A, Martins Dos Santos, Vitor A P, de Graaff, Leo H, Suarez-Diez, Maria, Schaap, Peter J

“…The filamentous fungus naturally accumulates relatively high amounts of fumarate. Although the culture conditions that increase fumarate yields are well…”
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Metabolic Modeling to Understand and Redesign Microbial Systems by van Heck, Ruben G. A

“…The goals of this thesis are to increase the understanding of microbial metabolism and to functionally (re-)design microbial systems using Genome- Scale…”
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A Multi-Platform Flow Device for Microbial by Hesselman, Matthijn C, Odoni, Dorett I, Ryback, Brendan M, de Groot, Suzette, van Heck, Ruben G. A, Keijsers, Jaap, Kolkman, Pim, Nieuwenhuijse, David, van Nuland, Youri M, Sebus, Erik, Spee, Rob, de Vries, Hugo, Wapenaar, Marten T, Ingham, Colin J, Schroën, Karin, Martins dos Santos, Vítor A. P, Spaans, Sebastiaan K, Hugenholtz, Floor, van Passel, Mark W. J

“…Novel microbial cultivation platforms are of increasing interest to researchers in academia and industry. The development of materials with specialized…”
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Design and analysis of a tunable synchronized oscillator by Ryback, Brendan M, Odoni, Dorett I, van Heck, Ruben Ga, van Nuland, Youri, Hesselman, Matthijn C, Martins Dos Santos, Vítor Ap, van Passel, Mark Wj, Hugenholtz, Floor

“…The use of in silico simulations as a basis for designing artificial biological systems (and experiments to characterize them) is one of the tangible…”
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Erratum: Green genes: bioinformatics and systems-biology innovations drive algal biotechnology by Reijnders, Maarten J.M.F, van Heck, Ruben G.A, Lam, Carolyn M.C, Scaife, Mark A, Santos, Vitor A.P. Martins dos, Smith, Alison G, Schaap, Peter J

“…Species Genome sizea (Mb) Available proteinsb Reported industrially relevant characteristicsa Refs Chlamydomonas reinhardtii 120 15 144 Model system for…”
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