Search Results - "de Vries, Ronald P."

Occurrence and function of enzymes for lignocellulose degradation in commercial Agaricus bisporus cultivation by Kabel, Mirjam A., Jurak, Edita, Mäkelä, Miia R., de Vries, Ronald P.

“…The white button mushroom Agaricus bisporus is economically the most important commercially produced edible fungus. It is grown on carbon- and nitrogen-rich…”
Get full text

Prevalence of transcription factors in ascomycete and basidiomycete fungi by Todd, Richard B, Zhou, Miaomiao, Ohm, Robin A, Leeggangers, Hendrika A C F, Visser, Loek, de Vries, Ronald P

“…Gene regulation underlies fungal physiology and therefore is a major factor in fungal biodiversity. Analysis of genome sequences has revealed a large number of…”
Get full text

The transcriptional activator GaaR of Aspergillus niger is required for release and utilization of d‐galacturonic acid from pectin by Alazi, Ebru, Niu, Jing, Kowalczyk, Joanna E., Peng, Mao, Aguilar Pontes, Maria Victoria, Kan, Jan A. L., Visser, Jaap, Vries, Ronald P., Ram, Arthur F. J.

“…We identified the d‐galacturonic acid (GA)‐responsive transcriptional activator GaaR of the saprotrophic fungus, Aspergillus niger, which was found to be…”
Get full text

Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression by Kowalczyk, Joanna E, Gruben, Birgit S, Battaglia, Evy, Wiebenga, Ad, Majoor, Eline, de Vries, Ronald P

“…In Aspergillus nidulans, the xylanolytic regulator XlnR and the arabinanolytic regulator AraR co-regulate pentose catabolism. In nature, the pentose sugars…”
Get full text

Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen by Dhillon, Braham, Feau, Nicolas, Aerts, Andrea L., Beauseigle, Stéphanie, Bernier, Louis, Copeland, Alex, Foster, Adam, Gill, Navdeep, Henrissat, Bernard, Herath, Padmini, LaButti, Kurt M., Levasseur, Anthony, Lindquist, Erika A., Majoor, Eline, Ohm, Robin A., Pangilinan, Jasmyn L., Pribowo, Amadeus, Saddler, John N., Sakalidis, Monique L., de Vries, Ronald P., Grigoriev, Igor V., Goodwin, Stephen B., Tanguay, Philippe, Hamelin, Richard C.

“…Some of the most damaging tree pathogens can attack woody stems, causing lesions (cankers) that may be lethal. To identify the genomic determinants of wood…”
Get full text

Construction of a cellulase hyper-expression system in Trichoderma reesei by promoter and enzyme engineering by Zou, Gen, Shi, Shaohua, Jiang, Yanping, van den Brink, Joost, de Vries, Ronald P, Chen, Ling, Zhang, Jun, Ma, Liang, Wang, Chengshu, Zhou, Zhihua

“…Trichoderma reesei is the preferred organism for producing industrial cellulases. However, a more efficient heterologous expression system for enzymes from…”
Get full text

Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level by Battaglia, Evy, Benoit, Isabelle, van den Brink, Joost, Wiebenga, Ad, Coutinho, Pedro M, Henrissat, Bernard, de Vries, Ronald P

“…Rhizopus oryzae is a zygomycete filamentous fungus, well-known as a saprobe ubiquitous in soil and as a pathogenic/spoilage fungus, causing Rhizopus rot and…”
Get full text

Macroalgae Derived Fungi Have High Abilities to Degrade Algal Polymers by Patyshakuliyeva, Aleksandrina, Falkoski, Daniel L, Wiebenga, Ad, Timmermans, Klaas, Vries, Ronald P de

“…Marine fungi associated with macroalgae are an ecologically important group that have a strong potential for industrial applications. In this study, twenty-two…”
Get full text

Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin by Benoit, Isabelle, Coutinho, Pedro M, Schols, Henk A, Gerlach, Jan P, Henrissat, Bernard, de Vries, Ronald P

“…Pectins are diverse and very complex biomolecules and their structure depends on the plant species and tissue. It was previously shown that derivatives of…”
Get full text

The secretome of the maize pathogen Ustilago maydis by Mueller, Olaf, Kahmann, Regine, Aguilar, Guillermo, Trejo-Aguilar, Blanca, Wu, Andy, de Vries, Ronald P.

“…Ustilago maydis establishes a biotrophic relationship with its host plant, i.e. plant cells stay alive despite massive fungal growth in infected tissue. The…”
Get full text

The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum by Li, Jiajia, Chroumpi, Tania, Garrigues, Sandra, Kun, Roland S, Meng, Jiali, Salazar-Cerezo, Sonia, Aguilar-Pontes, Maria Victoria, Zhang, Yu, Tejomurthula, Sravanthi, Lipzen, Anna, Ng, Vivian, Clendinen, Chaevien S, Tolić, Nikola, Grigoriev, Igor V, Tsang, Adrian, Mäkelä, Miia R, Snel, Berend, Peng, Mao, de Vries, Ronald P

“…Fungi play a critical role in the global carbon cycle by degrading plant polysaccharides to small sugars and metabolizing them as carbon and energy sources. We…”
Get full text

Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi by Baroncelli, Riccardo, Cobo-Díaz, José F, Benocci, Tiziano, Peng, Mao, Battaglia, Evy, Haridas, Sajeet, Andreopoulos, William, LaButti, Kurt, Pangilinan, Jasmyn, Lipzen, Anna, Koriabine, Maxim, Bauer, Diane, Le Floch, Gaetan, Mäkelä, Miia R, Drula, Elodie, Henrissat, Bernard, Grigoriev, Igor V, Crouch, Jo Anne, de Vries, Ronald P, Sukno, Serenella A, Thon, Michael R

“…Abstract Background Colletotrichum fungi infect a wide diversity of monocot and dicot hosts, causing diseases on almost all economically important plants…”
Get full text

Biotechnological applications and potential of fungal feruloyl esterases based on prevalence, classification and biochemical diversity by Benoit, Isabelle, Danchin, Etienne G. J, Bleichrodt, Robert-Jan, de Vries, Ronald P

“…Feruloyl esterases are part of the enzymatic spectrum employed by fungi and other microorganisms to degrade plant polysaccharides. They release ferulic acid…”
Get full text

Plant-polysaccharide-degrading enzymes from Basidiomycetes by Rytioja, Johanna, Hildén, Kristiina, Yuzon, Jennifer, Hatakka, Annele, de Vries, Ronald P, Mäkelä, Miia R

“…Basidiomycete fungi subsist on various types of plant material in diverse environments, from living and dead trees and forest litter to crops and grasses and…”
Get full text

Protease and lipase activities of fungal and bacterial strains derived from an artisanal raw ewe's milk cheese by Ozturkoglu-Budak, Sebnem, Wiebenga, Ad, Bron, Peter A., de Vries, Ronald P.

“…We previously identified the microbiota present during cheese ripening and observed high protease and lipase activity in Divle Cave cheese. To determine the…”
Get full text

Modern taxonomy of biotechnologically important Aspergillus and Penicillium species by Houbraken, Jos, de Vries, Ronald P, Samson, Robert A

“…Taxonomy is a dynamic discipline and name changes of fungi with biotechnological, industrial, or medical importance are often difficult to understand for…”
Get more information

A comparison between the homocyclic aromatic metabolic pathways from plant-derived compounds by bacteria and fungi by Lubbers, Ronnie J.M., Dilokpimol, Adiphol, Visser, Jaap, Mäkelä, Miia R., Hildén, Kristiina S., de Vries, Ronald P.

“…Aromatic compounds derived from lignin are of great interest for renewable biotechnical applications. They can serve in many industries e.g. as biochemical…”
Get full text

CRISPR/Cas9 technology enables the development of the filamentous ascomycete fungus Penicillium subrubescens as a new industrial enzyme producer by Salazar-Cerezo, Sonia, Kun, Roland S., de Vries, Ronald P., Garrigues, Sandra

“…•The CRISPR/Cas9 system has been established in Penicillium subrubescens.•Efficient protoplast generation and transformation protocols have been…”
Get full text

The Synthetic Potential of Fungal Feruloyl Esterases: A Correlation with Current Classification Systems and Predicted Structural Properties by Io Antonopoulou, Adiphol Dilokpimol, Laura Iancu, Miia R. Mäkelä, Simona Varriale, Gabriella Cerullo, Silvia Hüttner, Stefan Uthoff, Peter Jütten, Alexander Piechot, Alexander Steinbüchel, Lisbeth Olsson, Vincenza Faraco, Kristiina S. Hildén, Ronald P. de Vries, Ulrika Rova, Paul Christakopoulos

“…Twenty-eight fungal feruloyl esterases (FAEs) were evaluated for their synthetic abilities in a ternary system of n-hexane: t-butanol: 100 mM MOPS-NaOH pH 6.0…”
Get full text

The chimeric GaaR-XlnR transcription factor induces pectinolytic activities in the presence of D-xylose in Aspergillus niger by Kun, Roland S., Garrigues, Sandra, Di Falco, Marcos, Tsang, Adrian, de Vries, Ronald P.

“…Aspergillus niger is a filamentous fungus well known for its ability to produce a wide variety of pectinolytic enzymes, which have many applications in the…”
Get full text