Search Results - "de Vries, Jacob"

Exponential or Power Distance-Decay for Commuting? An Alternative Specification by de Vries, Jacob J, Nijkamp, Peter, Rietveld, Piet

“…In this paper we investigate the functional form of distance decay for commuting flows between municipalities in Denmark. Our inference is based on a single…”
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Effect of high or low protamine dosing on postoperative bleeding following heparin anticoagulation in cardiac surgery. A randomised clinical trial by Meesters, Michael I, Veerhoek, Dennis, de Lange, Fellery, de Vries, Jacob-Willem, de Jong, Jan R, Romijn, Johannes W A, Kelchtermans, Hilde, Huskens, Dana, van der Steeg, Robin, Thomas, Pepijn W A, Burtman, David T M, van Barneveld, Laurentius J M, Vonk, Alexander B A, Boer, Christa

“…While experimental data state that protamine exerts intrinsic anticoagulation effects, protamine is still frequently overdosed for heparin neutralisation…”
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HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses by Kravchenko, Anna, de Vries, Sjoerd Jacob, Smaïl-Tabbone, Malika, Chauvot de Beauchene, Isaure

“…The RNA-Recognition motif (RRM) is a protein domain that binds single-stranded RNA (ssRNA) and is present in as much as 2% of the human genome. Despite this…”
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Alonso's Theory of Movements: Developments in Spatial Interaction Modeling by de Vries, Jacob J., Nijkamp, Peter, Rietveld, Piet

“…The Spatial Interaction Model proposed by Alonso as "Theory of Movements" offers an innovative specification of spatial origin-destination flow models…”
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Time to stop ovarian cancer screening in BRCA1/2 mutation carriers? by van der Velde, Nienke M., Mourits, Marian J.E., Arts, Henriëtte J.G., de Vries, Jacob, Leegte, Beike K., Dijkhuis, Grieteke, Oosterwijk, Jan C., de Bock, Geertruida H.

“…Women at high risk of ovarian cancer due to a genetic predisposition may opt for either surveillance or prophylactic bilateral salpingo‐oophorectomy (pBSO)…”
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ProtNAff: protein-bound Nucleic Acid filters and fragment libraries by Moniot, Antoine, Guermeur, Yann, de Vries, Sjoerd Jacob, Chauvot de Beauchene, Isaure

“…Abstract Motivation Atomistic models of nucleic acids (NA) fragments can be used to model the 3D structures of specific protein–NA interactions and address the…”
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Estimation of Alonso's Theory of Movements by Means of Instrumental Variables by De Vries, Jacob J, Nijkamp, Peter, Rietveld, Piet

“…Alonso's Theory of Movements is a widely applicable Spatial Interaction Model, describing an equilibrium of inflows and outflows. Based on a survey of…”
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A Web Interface for Easy Flexible Protein-Protein Docking with ATTRACT by de Vries, Sjoerd J., Schindler, Christina E.M., Chauvot de Beauchêne, Isaure, Zacharias, Martin

“…Protein-protein docking programs can give valuable insights into the structure of protein complexes in the absence of an experimental complex structure. Web…”
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Predictive neural representations of sensory input revealed by a novel dynamic RSA approach by de Vries, Ingmar Engbert Jacob, Wurm, Moritz Franz

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Fragment-based modelling of single stranded RNA bound to RNA recognition motif containing proteins by de Beauchene, Isaure Chauvot, de Vries, Sjoerd J, Zacharias, Martin

“…Protein-RNA complexes are important for many biological processes. However, structural modeling of such complexes is hampered by the high flexibility of RNA…”
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Protein‐protein and peptide‐protein docking and refinement using ATTRACT in CAPRI by Schindler, Christina E. M., Chauvot de Beauchêne, Isaure, de Vries, Sjoerd J., Zacharias, Martin

“…ABSTRACT The ATTRACT coarse‐grained docking approach in combination with various types of atomistic, flexible refinement methods has been applied to predict…”
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Selective decontamination of the digestive tract and selective oropharyngeal decontamination in intensive care unit patients: a cost-effectiveness analysis by Oostdijk, Evelien A N, de Wit, G A, Bakker, Marina, de Smet, Anne Marie G A, Bonten, M J M

“…Objective To determine costs and effects of selective digestive tract decontamination (SDD) and selective oropharyngeal decontamination (SOD) as compared with…”
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Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach by Chauvot de Beauchene, Isaure, de Vries, Sjoerd J, Zacharias, Martin

“…Protein-RNA docking is hampered by the high flexibility of RNA, and particularly single-stranded RNA (ssRNA). Yet, ssRNA regions typically carry the…”
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Cryo-EM Data Are Superior to Contact and Interface Information in Integrative Modeling by de Vries, Sjoerd J., Chauvot de Beauchêne, Isaure, Schindler, Christina E.M., Zacharias, Martin

“…Protein-protein interactions carry out a large variety of essential cellular processes. Cryo-electron microscopy (cryo-EM) is a powerful technique for the…”
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Rapid Design of Knowledge-Based Scoring Potentials for Enrichment of Near-Native Geometries in Protein-Protein Docking by Sasse, Alexander, de Vries, Sjoerd J, Schindler, Christina E M, de Beauchêne, Isaure Chauvot, Zacharias, Martin

“…Protein-protein docking protocols aim to predict the structures of protein-protein complexes based on the structure of individual partners. Docking protocols…”
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Hitting the right note by Vries, Jacob de

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Sideways glance by Vries, Jacob de

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Blowing up a storm by Vries, Jacob de

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Opera which may not be so grand by Lovett, Geoffrey, Vries, Jacob de, Tebb, Bernie

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Alonso's Theory of movements: Developments in spatial interaction modeling: Geo computation and spatial analysis by DE VRIES, Jacob J, NIJKAMP, Peter, RIETVELD, Piet

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