Search Results - "de Moura, Alessandro P. S"

Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights by Fernandes, Lucas D., Moura, Alessandro P. S. de, Ciandrini, Luca

“…Protein synthesis rates are determined, at the translational level, by properties of the transcript’s sequence. The efficiency of an mRNA can be tuned by…”
Get full text

Integrated stress response of Escherichia coli to methylglyoxal: transcriptional readthrough from the nemRA operon enhances protection through increased expression of glyoxalase I by Ozyamak, Ertan, Almeida, Camila, Moura, Alessandro P. S., Miller, Samantha, Booth, Ian R.

“…Summary Methylglyoxal (MG) elicits activation of K+ efflux systems to protect cells against the toxicity of the electrophile. ChIP‐chip targeting RNA…”
Get full text

Integrative Model of Oxidative Stress Adaptation in the Fungal Pathogen Candida albicans by Komalapriya, Chandrasekaran, Kaloriti, Despoina, Tillmann, Anna T, Yin, Zhikang, Herrero-de-Dios, Carmen, Jacobsen, Mette D, Belmonte, Rodrigo C, Cameron, Gary, Haynes, Ken, Grebogi, Celso, de Moura, Alessandro P S, Gow, Neil A R, Thiel, Marco, Quinn, Janet, Brown, Alistair J P, Romano, M Carmen

“…The major fungal pathogen of humans, Candida albicans, mounts robust responses to oxidative stress that are critical for its virulence. These responses…”
Get full text

Fractal structures in stenoses and aneurysms in blood vessels by Schelin, Adriane B., Károlyi, György, de Moura, Alessandro P. S., Booth, Nuala A., Grebogi, Celso

“…Recent advances in the field of chaotic advection provide the impetus to revisit the dynamics of particles transported by blood flow in the presence of vessel…”
Get full text

Mathematical modelling of whole chromosome replication by de Moura, Alessandro P.S, Retkute, Renata, Hawkins, Michelle, Nieduszynski, Conrad A

“…All chromosomes must be completely replicated prior to cell division, a requirement that demands the activation of a sufficient number of appropriately…”
Get full text

Stochastic association of neighboring replicons creates replication factories in budding yeast by Saner, Nazan, Karschau, Jens, Natsume, Toyoaki, Gierlinski, Marek, Retkute, Renata, Hawkins, Michelle, Nieduszynski, Conrad A, Blow, J Julian, de Moura, Alessandro P S, Tanaka, Tomoyuki U

“…Inside the nucleus, DNA replication is organized at discrete sites called replication factories, consisting of DNA polymerases and other replication proteins…”
Get full text

Optimal placement of origins for DNA replication by Karschau, Jens, Blow, J Julian, de Moura, Alessandro P S

“…DNA replication is an essential process in biology and its timing must be robust so that cells can divide properly. Random fluctuations in the formation of…”
Get full text

Oxygen-Driven Tumour Growth Model: A Pathology-Relevant Mathematical Approach by Delgado-SanMartin, Juan A, Hare, Jennifer I, de Moura, Alessandro P S, Yates, James W T

“…Xenografts--as simplified animal models of cancer-differ substantially in vasculature and stromal architecture when compared to clinical tumours. This makes…”
Get full text

Signatures of small-world and scale-free properties in large computer programs by de Moura, Alessandro P S, Lai, Ying-Cheng, Motter, Adilson E

“…A large computer program is typically divided into many hundreds or even thousands of smaller units, whose logical connections define a network in a natural…”
Get full text

Frontiers of chaotic advection by Aref, Hassan, Blake, John R., Budišić, Marko, Cardoso, Silvana S. S., Cartwright, Julyan H. E., Clercx, Herman J. H., El Omari, Kamal, Feudel, Ulrike, Golestanian, Ramin, Gouillart, Emmanuelle, van Heijst, GertJan F., Krasnopolskaya, Tatyana S., Le Guer, Yves, MacKay, Robert S., Meleshko, Vyacheslav V., Metcalfe, Guy, Mezić, Igor, de Moura, Alessandro P. S., Piro, Oreste, Speetjens, Michel F. M., Sturman, Rob, Thiffeault, Jean-Luc, Tuval, Idan

“…This work reviews the present position of and surveys future perspectives in the physics of chaotic advection: the field that emerged three decades ago at the…”
Get full text

Diffusion in randomly perturbed dissipative dynamics by Rodrigues, Christian S., Chechkin, Aleksei V., de Moura, Alessandro P. S., Grebogi, Celso, Klages, Rainer

“…Dynamical systems having many coexisting attractors present interesting properties from both fundamental theoretical and modelling points of view. When such…”
Get full text

Strange eigenmodes and chaotic advection in open fluid flows by de Moura, Alessandro P. S.

“…We study the dynamics of mixing of advected fields in open chaotic flows. We propose the eigenfunctions of the stroboscopic advection-diffusion (SAD) operator…”
Get full text

A Matter of Life or Death: Modeling DNA Damage and Repair in Bacteria by Karschau, Jens, de Almeida, Camila, Richard, Morgiane C., Miller, Samantha, Booth, Ian R., Grebogi, Celso, de Moura, Alessandro P.S.

“…DNA damage is a hazard all cells must face, and evolution has created a number of mechanisms to repair damaged bases in the chromosome. Paradoxically, many of…”
Get full text

The dynamics of genome replication using deep sequencing by Müller, Carolin A, Hawkins, Michelle, Retkute, Renata, Malla, Sunir, Wilson, Ray, Blythe, Martin J, Nakato, Ryuichiro, Komata, Makiko, Shirahige, Katsuhiko, de Moura, Alessandro P S, Nieduszynski, Conrad A

“…Eukaryotic genomes are replicated from multiple DNA replication origins. We present complementary deep sequencing approaches to measure origin location and…”
Get full text

Topology of the conceptual network of language by Motter, Adilson E, de Moura, Alessandro P S, Lai, Ying-Cheng, Dasgupta, Partha

“…We define two words in a language to be connected if they express similar concepts. The network of connections among the many thousands of words that make up a…”
Get full text

High-Resolution Replication Profiles Define the Stochastic Nature of Genome Replication Initiation and Termination by Hawkins, Michelle, Retkute, Renata, Müller, Carolin A., Saner, Nazan, Tanaka, Tomoyuki U., de Moura, Alessandro P.S., Nieduszynski, Conrad A.

“…Eukaryotic genome replication is stochastic, and each cell uses a different cohort of replication origins. We demonstrate that interpreting high-resolution…”
Get full text

Inducing chaos by resonant perturbations : Theory and experiment by LAI, Ying-Cheng, KANDANGATH, Anil, KRISHNAMOORTHY, Satish, GAUDET, John A, DE MOURA, Alessandro P. S

“…We propose a scheme to induce chaos in nonlinear oscillators that either are by themselves incapable of exhibiting chaos or are far away from parameter regions…”
Get full text

Combinatorial stresses kill pathogenic Candida species by Kaloriti, Despoina, Tillmann, Anna, Cook, Emily, Jacobsen, Mette, You, Tao, Lenardon, Megan, Ames, Lauren, Barahona, Mauricio, Chandrasekaran, Komelapriya, Coghill, George, Goodman, Daniel, Gow, Neil A. R., Grebogi, Celso, Ho, Hsueh-Lui, Ingram, Piers, McDonagh, Andrew, de Moura, Alessandro P. S., Pang, Wei, Puttnam, Melanie, Radmaneshfar, Elahe, Romano, Maria Carmen, Silk, Daniel, Stark, Jaroslav, Stumpf, Michael, Thiel, Marco, Thorne, Thomas, Usher, Jane, Yin, Zhikang, Haynes, Ken, Brown, Alistair J. P.

“…Pathogenic microbes exist in dynamic niches and have evolved robust adaptive responses to promote survival in their hosts. The major fungal pathogens of…”
Get full text

Reacting particles in open chaotic flows by de Moura, Alessandro P S

“…We study the collision probability p of particles advected by open flows with chaotic advection. We show that p scales with the particle size (or,…”
Get full text

Traffic of particles in complex networks by Germano, Renato, de Moura, Alessandro P S

“…The study of the information flow through communication networks, such as the Internet, is of great importance. In the Internet, information flows in discrete…”
Get full text