Search Results - "de Lomana, Adrián López García"

Synergistic epistasis enhances the co-operativity of mutualistic interspecies interactions by Turkarslan, Serdar, Stopnisek, Nejc, Thompson, Anne W., Arens, Christina E., Valenzuela, Jacob J., Wilson, James, Hunt, Kristopher A., Hardwicke, Jessica, de Lomana, Adrián López García, Lim, Sujung, Seah, Yee Mey, Fu, Ying, Wu, Liyou, Zhou, Jizhong, Hillesland, Kristina L., Stahl, David A., Baliga, Nitin S.

“…Early evolution of mutualism is characterized by big and predictable adaptive changes, including the specialization of interacting partners, such as through…”
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Statistical analysis of global connectivity and activity distributions in cellular networks by López García De Lomana, Adrián, Beg, Qasim K, De Fabritiis, G, Villà-Freixa, Jordi

“…Various molecular interaction networks have been claimed to follow power-law decay for their global connectivity distribution. It has been proposed that there…”
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Adaptive Prediction Emerges Over Short Evolutionary Time Scales by López García de Lomana, Adrián, Kaur, Amardeep, Turkarslan, Serdar, Beer, Karlyn D, Mast, Fred D, Smith, Jennifer J, Aitchison, John D, Baliga, Nitin S

“…Adaptive prediction is a capability of diverse organisms, including microbes, to sense a cue and prepare in advance to deal with a future environmental…”
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refined genome‐scale reconstruction of Chlamydomonas metabolism provides a platform for systems‐level analyses by Imam, Saheed, Schäuble, Sascha, Valenzuela, Jacob, López García de Lomana, Adrián, Carter, Warren, Price, Nathan D, Baliga, Nitin S

“…Microalgae have reemerged as organisms of prime biotechnological interest due to their ability to synthesize a suite of valuable chemicals. To harness the…”
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Lipid mediator profiles of burn wound healing: Acellular cod fish skin grafts promote the formation of EPA and DHA derived lipid mediators following seven days of treatment by Kotronoulas, Aristotelis, de Lomana, Adrián López García, Karvelsson, Sigurður Trausti, Heijink, Marieke, Stone II, Randolph, Giera, Martin, Rolfsson, Ottar

“…•This is the first study to investigate whether omega-3 rich biomaterial such as fish skin graft can affect the lipidome of burn wound healing.•The study…”
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Mechanism for microbial population collapse in a fluctuating resource environment by Turkarslan, Serdar, Raman, Arjun V, Thompson, Anne W, Arens, Christina E, Gillespie, Mark A, von Netzer, Frederick, Hillesland, Kristina L, Stolyar, Sergey, López García de Lomana, Adrian, Reiss, David J, Gorman‐Lewis, Drew, Zane, Grant M, Ranish, Jeffrey A, Wall, Judy D, Stahl, David A, Baliga, Nitin S

“…Managing trade‐offs through gene regulation is believed to confer resilience to a microbial community in a fluctuating resource environment. To investigate…”
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Robustness of a model microbial community emerges from population structure among single cells of a clonal population by Thompson, Anne W., Turkarslan, Serdar, Arens, Christina E., López García de Lomana, Adrián, Raman, Arjun V., Stahl, David A., Baliga, Nitin S.

“…Summary Microbial populations can withstand, overcome and persist in the face of environmental fluctuation. Previously, we demonstrated how conditional gene…”
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ATG7(2) Interacts With Metabolic Proteins and Regulates Central Energy Metabolism by Ostacolo, Kevin, López García de Lomana, Adrián, Larat, Clémence, Hjaltalin, Valgerdur, Holm, Kristrun Yr, Hlynsdóttir, Sigríður S., Soucheray, Margaret, Sooman, Linda, Rolfsson, Ottar, Krogan, Nevan J., Steingrimsson, Eirikur, Swaney, Danielle L., Ogmundsdottir, Margret H.

“…ABSTRACT Macroautophagy/autophagy is an essential catabolic process that targets a wide variety of cellular components including proteins, organelles, and…”
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Systems biology approaches towards predictive microbial ecology by Otwell, Anne E., López García de Lomana, Adrián, Gibbons, Sean M., Orellana, Mónica V., Baliga, Nitin S.

“…Through complex interspecies interactions, microbial processes drive nutrient cycling and biogeochemistry. However, we still struggle to predict specifically…”
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Robustness of a model microbial community emerges from population structure among single cells of a clonal population by Thompson, Anne W., Turkarslan, Serdar, Arens, Christina E., López García de Lomana, Adrián, Raman, Arjun V., Stahl, David A., Baliga, Nitin S.

“…Microbial populations can withstand, overcome and persist in the face of environmental fluctuation. Previously, we demonstrated how conditional gene regulation…”
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Topological augmentation to infer hidden processes in biological systems by Sunnåker, Mikael, Zamora-Sillero, Elias, López García de Lomana, Adrián, Rudroff, Florian, Sauer, Uwe, Stelling, Joerg, Wagner, Andreas

“…A common problem in understanding a biochemical system is to infer its correct structure or topology. This topology consists of all relevant state…”
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Selective Translation of Low Abundance and Upregulated Transcripts in Halobacterium salinarum by López García de Lomana, Adrián, Kusebauch, Ulrike, Raman, Arjun V., Pan, Min, Turkarslan, Serdar, Lorenzetti, Alan P. R., Moritz, Robert L., Baliga, Nitin S.

“…Our findings demonstrate conclusively that low abundance and upregulated transcripts are preferentially translated, potentially by environment-specific…”
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Quantitative prediction of conditional vulnerabilities in regulatory and metabolic networks using PRIME by Immanuel, Selva Rupa Christinal, Arrieta-Ortiz, Mario L., Ruiz, Rene A., Pan, Min, Lopez Garcia de Lomana, Adrian, Peterson, Eliza J. R., Baliga, Nitin S.

“…The ability of Mycobacterium tuberculosis (Mtb) to adopt heterogeneous physiological states underlies its success in evading the immune system and tolerating…”
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Genetic program activity delineates risk, relapse, and therapy responsiveness in multiple myeloma by Wall, Matthew A., Turkarslan, Serdar, Wu, Wei-Ju, Danziger, Samuel A., Reiss, David J., Mason, Mike J., Dervan, Andrew P., Trotter, Matthew W. B., Bassett, Douglas, Hershberg, Robert M., Lomana, Adrián López García de, Ratushny, Alexander V., Baliga, Nitin S.

“…Despite recent advancements in the treatment of multiple myeloma (MM), nearly all patients ultimately relapse and many become refractory to multiple lines of…”
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Ocean acidification conditions increase resilience of marine diatoms by Valenzuela, Jacob J., López García de Lomana, Adrián, Lee, Allison, Armbrust, E. V., Orellana, Mónica V., Baliga, Nitin S.

“…The fate of diatoms in future acidified oceans could have dramatic implications on marine ecosystems, because they account for ~40% of marine primary…”
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Systems biology approaches towards predictive microbial ecology by Otwell, Anne E., López García de Lomana, Adrián, Gibbons, Sean M., Orellana, Mónica V., Baliga, Nitin S.

“…Summary Through complex interspecies interactions, microbial processes drive nutrient cycling and biogeochemistry. However, we still struggle to predict…”
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Metabolic Response in Endothelial Cells to Catecholamine Stimulation Associated with Increased Vascular Permeability by López García de Lomana, Adrián, Vilhjálmsson, Arnar Ingi, McGarrity, Sarah, Sigurðardóttir, Rósa, Anuforo, Ósk, Viktorsdóttir, Alexía Rós, Kotronoulas, Aris, Bergmann, Andreas, Franzson, Leifur, Halldórsson, Haraldur, Henriksen, Hanne H, Wade, Charles E, Johansson, Pär Ingemar, Rolfsson, Óttar

“…Disruption to endothelial cell homeostasis results in an extensive variety of human pathologies that are particularly relevant to major trauma. Circulating…”
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Fish Skin Grafts Affect Adenosine and Methionine Metabolism during Burn Wound Healing by Kotronoulas, Aristotelis, de Lomana, Adrián López García, Einarsdóttir, Helga Kristín, Kjartansson, Hilmar, Stone, 2nd, Randolph, Rolfsson, Óttar

“…Burn wound healing is a complex process orchestrated through successive biochemical events that span from weeks to months depending on the depth of the wound…”
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A comprehensive spectral assay library to quantify the Halobacterium salinarum NRC-1 proteome by DIA/SWATH-MS by Kusebauch, Ulrike, Lorenzetti, Alan P. R., Campbell, David S., Pan, Min, Shteynberg, David, Kapil, Charu, Midha, Mukul K., López García de Lomana, Adrián, Baliga, Nitin S., Moritz, Robert L.

“…Data-Independent Acquisition (DIA) is a mass spectrometry-based method to reliably identify and reproducibly quantify large fractions of a target proteome. The…”
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Metabolic and Transcriptional Changes across Osteogenic Differentiation of Mesenchymal Stromal Cells by Sigmarsdottir, Thora Bjorg, McGarrity, Sarah, de Lomana, Adrián López García, Kotronoulas, Aristotelis, Sigurdsson, Snaevar, Yurkovich, James T, Rolfsson, Ottar, Sigurjonsson, Olafur Eysteinn

“…Mesenchymal stromal cells (MSCs) are multipotent post-natal stem cells with applications in tissue engineering and regenerative medicine. MSCs can…”
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